Wall clock time and date at job start Fri Apr 10 2020 17:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46909 * 2 1 4 4 C 1.50698 * 109.47050 * 240.00562 * 2 1 3 5 5 H 1.08004 * 120.00251 * 245.35854 * 4 2 1 6 6 C 1.37881 * 120.00419 * 65.35173 * 4 2 1 7 7 N 1.31519 * 119.99492 * 5.15720 * 6 4 2 8 8 Si 1.86797 * 120.00069 * 185.15771 * 6 4 2 9 9 H 1.48501 * 109.47243 * 85.00288 * 8 6 4 10 10 H 1.48507 * 109.46766 * 204.99906 * 8 6 4 11 11 H 1.48491 * 109.47366 * 324.99740 * 8 6 4 12 12 N 1.46497 * 109.47382 * 120.00211 * 2 1 3 13 13 C 1.46499 * 120.00007 * 60.00357 * 12 2 1 14 14 S 1.65605 * 120.00017 * 239.99661 * 12 2 1 15 15 O 1.42095 * 106.40182 * 203.54023 * 14 12 2 16 16 O 1.42100 * 106.40058 * 336.46517 * 14 12 2 17 17 N 1.65602 * 107.21509 * 90.00091 * 14 12 2 18 18 C 1.46500 * 119.99796 * 65.00157 * 17 14 12 19 19 C 1.50700 * 109.46865 * 165.00051 * 18 17 14 20 20 C 1.34668 * 126.59422 * 95.02737 * 19 18 17 21 21 N 1.34129 * 108.02163 * 179.97438 * 20 19 18 22 22 C 1.30500 * 109.25579 * 359.97438 * 21 20 19 23 23 N 1.35043 * 108.69886 * 359.76579 * 22 21 20 24 24 C 1.46505 * 126.39692 * 180.26536 * 23 22 21 25 25 H 1.08998 * 109.47148 * 174.89510 * 1 2 3 26 26 H 1.09004 * 109.46760 * 294.88797 * 1 2 3 27 27 H 1.08996 * 109.47633 * 54.89139 * 1 2 3 28 28 H 0.97003 * 119.99628 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.47577 * 89.99961 * 13 12 2 30 30 H 1.08996 * 109.46856 * 209.99875 * 13 12 2 31 31 H 1.08997 * 109.46661 * 329.99629 * 13 12 2 32 32 H 0.97002 * 119.99941 * 244.99686 * 17 14 12 33 33 H 1.09000 * 109.47343 * 284.99857 * 18 17 14 34 34 H 1.08997 * 109.47305 * 44.99887 * 18 17 14 35 35 H 1.08005 * 125.98671 * 359.95871 * 20 19 18 36 36 H 1.07995 * 125.64566 * 180.02562 * 22 21 20 37 37 H 1.08999 * 109.46979 * 270.12911 * 24 23 22 38 38 H 1.09002 * 109.46620 * 30.12435 * 24 23 22 39 39 H 1.08999 * 109.47298 * 150.12354 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.5799 -1.6361 -1.1339 6 6 1.7926 -0.1783 -2.4798 7 7 1.2155 0.9980 -2.5939 8 14 2.2875 -1.1284 -4.0101 9 1 1.2106 -2.0862 -4.3680 10 1 2.5006 -0.1808 -5.1336 11 1 3.5446 -1.8731 -3.7455 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 16 2.9705 0.1141 2.2861 15 8 3.7119 -0.8789 2.9813 16 8 3.5794 1.1830 1.5747 17 7 1.9608 0.8090 3.3998 18 6 1.1512 -0.0354 4.2817 19 6 0.6170 0.7947 5.4204 20 6 -0.5875 1.3939 5.4811 21 7 -0.6748 2.0317 6.6578 22 6 0.4296 1.8501 7.3288 23 7 1.2604 1.0790 6.5947 24 6 2.6012 0.6328 6.9815 25 1 -0.3633 -1.0236 -0.0914 26 1 -0.3633 0.4325 0.9323 27 1 -0.3634 0.5910 -0.8406 28 1 1.0466 1.3721 -3.4728 29 1 2.4158 -2.7377 0.9715 30 1 1.6239 -2.2853 2.5000 31 1 0.6905 -2.3002 0.9845 32 1 1.9056 1.7750 3.4682 33 1 0.3190 -0.4569 3.7178 34 1 1.7672 -0.8425 4.6781 35 1 -1.3495 1.3659 4.7162 36 1 0.6421 2.2469 8.3105 37 1 3.3373 1.3658 6.6516 38 1 2.6512 0.5302 8.0656 39 1 2.8124 -0.3296 6.5154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290169947.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:29 Heat of formation + Delta-G solvation = -9.066612 kcal Electronic energy + Delta-G solvation = -23505.543336 eV Core-core repulsion = 19997.557252 eV Total energy + Delta-G solvation = -3507.986083 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 302.120 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.24236 -36.75798 -36.21184 -35.38227 -35.28626 -34.08819 -32.55911 -30.03691 -29.20908 -27.19117 -25.69274 -25.41586 -25.11096 -21.59196 -20.89057 -20.29756 -18.90449 -17.59245 -17.20071 -16.83743 -16.33848 -16.03514 -15.53414 -15.02345 -14.80131 -14.34678 -13.90628 -13.51600 -13.49100 -13.27866 -13.09231 -13.03472 -12.80905 -12.68211 -12.07095 -11.80219 -11.63872 -11.51960 -11.46226 -11.25288 -10.99861 -10.82949 -10.53013 -10.34544 -10.11832 -10.01646 -9.76275 -9.48529 -9.27667 -8.60110 -8.44860 -8.02722 -6.08812 -4.13348 1.07811 1.85338 2.58462 3.00850 3.28673 3.35483 3.38461 3.51763 4.05838 4.38847 4.40303 4.49052 4.55385 4.83829 4.86075 5.03931 5.10658 5.22777 5.23981 5.39277 5.53126 5.61612 5.86167 6.07492 6.18042 6.31698 6.57016 6.58507 6.69705 6.73401 6.95692 6.99047 7.05824 7.39781 7.61317 7.76048 7.90476 7.95575 8.25228 8.88759 9.51835 10.99024 Molecular weight = 302.12amu Principal moments of inertia in cm(-1) A = 0.026952 B = 0.004116 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.619096 B = 6801.796161 C = 7245.112663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.267 3.733 3 H 0.064 0.936 4 C -0.523 4.523 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.988 5.988 13 C 0.108 3.892 14 S 2.779 3.221 15 O -0.998 6.998 16 O -0.970 6.970 17 N -1.132 6.132 18 C 0.200 3.800 19 C -0.036 4.036 20 C -0.005 4.005 21 N -0.496 5.496 22 C 0.182 3.818 23 N -0.454 5.454 24 C 0.067 3.933 25 H 0.036 0.964 26 H 0.016 0.984 27 H 0.077 0.923 28 H 0.264 0.736 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.414 0.586 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.173 0.827 36 H 0.205 0.795 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.146 -1.978 17.886 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.164 3.836 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.832 5.832 13 C -0.039 4.039 14 S 2.787 3.213 15 O -0.981 6.981 16 O -0.954 6.954 17 N -0.891 5.891 18 C 0.072 3.928 19 C -0.151 4.151 20 C -0.154 4.154 21 N -0.213 5.213 22 C -0.100 4.100 23 N -0.137 5.137 24 C -0.076 4.076 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.247 0.753 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.190 0.810 36 H 0.221 0.779 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.743 -1.606 18.047 18.133 hybrid contribution 0.502 -0.510 -1.091 1.305 sum -0.241 -2.116 16.956 17.089 Atomic orbital electron populations 1.22050 0.98436 1.00202 0.99467 1.18758 0.91006 0.93390 0.80467 0.91798 1.21290 1.36054 1.08759 0.90162 0.91942 1.24920 0.95097 0.94756 0.99019 1.69919 1.42718 1.15899 1.24099 0.86536 0.78957 0.79668 0.82389 1.20557 1.21204 1.19922 1.57688 1.69997 1.19709 1.35757 1.21177 1.01849 0.82216 0.98639 1.01999 0.73646 0.73187 0.72430 1.93527 1.69139 1.60790 1.74683 1.93631 1.74200 1.55917 1.71645 1.56402 1.62323 1.17624 1.52751 1.19451 0.95394 0.90866 0.87060 1.21190 0.95711 1.08263 0.89961 1.22217 0.96551 1.00022 0.96642 1.70323 1.22275 1.22856 1.05891 1.24970 0.87221 0.98034 0.99768 1.45336 1.15006 1.38866 1.14500 1.22125 0.80990 1.02219 1.02230 0.94445 0.96529 0.90435 0.92663 0.93169 0.93469 0.90865 0.75250 0.89213 0.90182 0.80957 0.77871 0.90222 0.89295 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.84 37.15 0.33 -2.72 16 2 C 0.27 6.33 2.49 -69.09 -0.17 6.15 16 3 H 0.06 1.71 6.89 -51.93 -0.36 1.35 16 4 C -0.52 -13.86 8.34 -34.44 -0.29 -14.14 16 5 H 0.06 1.64 7.52 -52.48 -0.39 1.25 16 6 C 0.06 1.75 5.29 -17.82 -0.09 1.66 16 7 N -0.89 -24.77 11.99 55.43 0.66 -24.11 16 8 Si 0.90 20.97 29.54 -169.99 -5.02 15.94 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.99 -19.44 3.12 -115.86 -0.36 -19.80 16 13 C 0.11 1.78 9.48 59.85 0.57 2.35 16 14 S 2.78 51.49 6.10 -107.50 -0.66 50.84 16 15 O -1.00 -19.21 16.68 -57.17 -0.95 -20.16 16 16 O -0.97 -22.15 16.70 -57.17 -0.95 -23.10 16 17 N -1.13 -15.77 6.05 -11.66 -0.07 -15.84 16 18 C 0.20 2.32 6.49 -5.19 -0.03 2.28 16 19 C -0.04 -0.41 6.35 -81.60 -0.52 -0.93 16 20 C 0.00 -0.06 11.79 -17.81 -0.21 -0.27 16 21 N -0.50 -6.45 11.25 -14.67 -0.16 -6.61 16 22 C 0.18 1.83 12.56 -90.38 -1.14 0.69 16 23 N -0.45 -4.47 3.15 -121.36 -0.38 -4.85 16 24 C 0.07 0.45 11.01 59.85 0.66 1.11 16 25 H 0.04 0.76 6.88 -51.93 -0.36 0.40 16 26 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.08 1.86 6.84 -51.93 -0.36 1.51 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.05 0.85 8.09 -51.93 -0.42 0.43 16 30 H 0.05 0.62 7.79 -51.93 -0.40 0.22 16 31 H 0.07 1.16 6.53 -51.93 -0.34 0.82 16 32 H 0.41 5.49 8.64 -34.47 -0.30 5.20 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 0.87 6.98 -51.93 -0.36 0.51 16 35 H 0.17 1.92 8.06 -52.48 -0.42 1.49 16 36 H 0.20 1.22 8.06 -52.49 -0.42 0.79 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.64 7.30 -51.93 -0.38 0.26 16 LS Contribution 338.98 15.07 5.11 5.11 Total: -1.00 -34.31 338.98 -9.03 -43.34 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -5.34 Total: 3.06 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -0.90 Total: -3.82 kcal Atomic # 7 Polarization: -70.90 SS G_CDS: -0.32 Total: -71.21 kcal Atomic # 8 Polarization: -41.36 SS G_CDS: -1.91 Total: -43.26 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 51.49 SS G_CDS: -0.66 Total: 50.84 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.31 -9.03 -43.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290169947.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.275 kcal (2) G-P(sol) polarization free energy of solvation -34.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds