Wall clock time and date at job start Fri Apr 10 2020 17:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46909 * 2 1 4 4 C 1.50698 * 109.47050 * 240.00562 * 2 1 3 5 5 H 1.08004 * 120.00251 * 245.35854 * 4 2 1 6 6 C 1.37881 * 120.00419 * 65.35173 * 4 2 1 7 7 N 1.31519 * 119.99492 * 5.15720 * 6 4 2 8 8 Si 1.86797 * 120.00069 * 185.15771 * 6 4 2 9 9 H 1.48501 * 109.47243 * 85.00288 * 8 6 4 10 10 H 1.48507 * 109.46766 * 204.99906 * 8 6 4 11 11 H 1.48491 * 109.47366 * 324.99740 * 8 6 4 12 12 N 1.46497 * 109.47382 * 120.00211 * 2 1 3 13 13 C 1.46499 * 120.00007 * 60.00357 * 12 2 1 14 14 S 1.65605 * 120.00017 * 239.99661 * 12 2 1 15 15 O 1.42095 * 106.40182 * 203.54023 * 14 12 2 16 16 O 1.42100 * 106.40058 * 336.46517 * 14 12 2 17 17 N 1.65602 * 107.21509 * 90.00091 * 14 12 2 18 18 C 1.46500 * 119.99796 * 65.00157 * 17 14 12 19 19 C 1.50700 * 109.46865 * 165.00051 * 18 17 14 20 20 C 1.34668 * 126.59422 * 95.02737 * 19 18 17 21 21 N 1.34129 * 108.02163 * 179.97438 * 20 19 18 22 22 C 1.30500 * 109.25579 * 359.97438 * 21 20 19 23 23 N 1.35043 * 108.69886 * 359.76579 * 22 21 20 24 24 C 1.46505 * 126.39692 * 180.26536 * 23 22 21 25 25 H 1.08998 * 109.47148 * 174.89510 * 1 2 3 26 26 H 1.09004 * 109.46760 * 294.88797 * 1 2 3 27 27 H 1.08996 * 109.47633 * 54.89139 * 1 2 3 28 28 H 0.97003 * 119.99628 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.47577 * 89.99961 * 13 12 2 30 30 H 1.08996 * 109.46856 * 209.99875 * 13 12 2 31 31 H 1.08997 * 109.46661 * 329.99629 * 13 12 2 32 32 H 0.97002 * 119.99941 * 244.99686 * 17 14 12 33 33 H 1.09000 * 109.47343 * 284.99857 * 18 17 14 34 34 H 1.08997 * 109.47305 * 44.99887 * 18 17 14 35 35 H 1.08005 * 125.98671 * 359.95871 * 20 19 18 36 36 H 1.07995 * 125.64566 * 180.02562 * 22 21 20 37 37 H 1.08999 * 109.46979 * 270.12911 * 24 23 22 38 38 H 1.09002 * 109.46620 * 30.12435 * 24 23 22 39 39 H 1.08999 * 109.47298 * 150.12354 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.5799 -1.6361 -1.1339 6 6 1.7926 -0.1783 -2.4798 7 7 1.2155 0.9980 -2.5939 8 14 2.2875 -1.1284 -4.0101 9 1 1.2106 -2.0862 -4.3680 10 1 2.5006 -0.1808 -5.1336 11 1 3.5446 -1.8731 -3.7455 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 16 2.9705 0.1141 2.2861 15 8 3.7119 -0.8789 2.9813 16 8 3.5794 1.1830 1.5747 17 7 1.9608 0.8090 3.3998 18 6 1.1512 -0.0354 4.2817 19 6 0.6170 0.7947 5.4204 20 6 -0.5875 1.3939 5.4811 21 7 -0.6748 2.0317 6.6578 22 6 0.4296 1.8501 7.3288 23 7 1.2604 1.0790 6.5947 24 6 2.6012 0.6328 6.9815 25 1 -0.3633 -1.0236 -0.0914 26 1 -0.3633 0.4325 0.9323 27 1 -0.3634 0.5910 -0.8406 28 1 1.0466 1.3721 -3.4728 29 1 2.4158 -2.7377 0.9715 30 1 1.6239 -2.2853 2.5000 31 1 0.6905 -2.3002 0.9845 32 1 1.9056 1.7750 3.4682 33 1 0.3190 -0.4569 3.7178 34 1 1.7672 -0.8425 4.6781 35 1 -1.3495 1.3659 4.7162 36 1 0.6421 2.2469 8.3105 37 1 3.3373 1.3658 6.6516 38 1 2.6512 0.5302 8.0656 39 1 2.8124 -0.3296 6.5154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290169947.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:29 Heat of formation + Delta-G solvation = -34.219501 kcal Electronic energy + Delta-G solvation = -23506.634047 eV Core-core repulsion = 19997.557252 eV Total energy + Delta-G solvation = -3509.076795 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 302.120 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.03953 -38.34572 -37.87375 -36.89697 -36.46329 -34.83214 -34.47874 -30.99715 -30.94185 -27.81214 -27.22775 -26.99851 -26.37715 -22.62451 -22.38343 -21.16131 -20.31825 -18.88485 -18.58050 -18.36905 -17.77573 -17.23703 -16.77561 -16.40818 -15.89306 -15.65100 -15.16182 -14.81942 -14.73387 -14.55804 -14.23740 -13.91732 -13.78032 -13.73217 -13.40632 -13.39362 -13.21241 -13.15347 -12.98530 -12.88160 -12.74210 -12.59703 -12.25037 -12.18092 -11.84793 -11.14036 -10.97949 -10.60712 -10.53834 -10.47242 -9.68939 -9.42029 -8.11966 -6.22942 -0.37106 1.00056 1.43619 1.45083 1.53861 1.89475 2.04650 2.23471 2.45106 2.65691 3.18720 3.39377 3.59133 3.90043 3.98376 4.07461 4.08989 4.29253 4.40628 4.57815 4.69932 4.71671 4.77496 4.82672 4.86678 5.00576 5.06379 5.16396 5.23845 5.37583 5.62996 5.68407 5.73516 5.89052 5.94995 6.15679 6.28346 6.30380 6.85523 7.09546 7.45582 8.94593 Molecular weight = 302.12amu Principal moments of inertia in cm(-1) A = 0.026952 B = 0.004116 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.619096 B = 6801.796161 C = 7245.112663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.271 3.729 3 H 0.027 0.973 4 C -0.538 4.538 5 H 0.059 0.941 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.954 3.046 9 H -0.268 1.268 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.995 5.995 13 C 0.099 3.901 14 S 2.799 3.201 15 O -1.004 7.004 16 O -1.018 7.018 17 N -1.117 6.117 18 C 0.197 3.803 19 C -0.043 4.043 20 C -0.021 4.021 21 N -0.536 5.536 22 C 0.192 3.808 23 N -0.454 5.454 24 C 0.059 3.941 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.264 0.736 29 H 0.040 0.960 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.419 0.581 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.175 0.825 36 H 0.242 0.758 37 H 0.081 0.919 38 H 0.121 0.879 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.261 -3.122 19.609 19.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.167 3.833 3 H 0.045 0.955 4 C -0.578 4.578 5 H 0.077 0.923 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.780 3.220 9 H -0.193 1.193 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.837 5.837 13 C -0.046 4.046 14 S 2.808 3.192 15 O -0.987 6.987 16 O -1.002 7.002 17 N -0.880 5.880 18 C 0.070 3.930 19 C -0.160 4.160 20 C -0.171 4.171 21 N -0.254 5.254 22 C -0.091 4.091 23 N -0.136 5.136 24 C -0.082 4.082 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.254 0.746 33 H 0.121 0.879 34 H 0.110 0.890 35 H 0.193 0.807 36 H 0.258 0.742 37 H 0.100 0.900 38 H 0.140 0.860 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.842 -2.785 19.779 19.991 hybrid contribution 0.558 -0.143 -1.468 1.577 sum -0.284 -2.928 18.310 18.545 Atomic orbital electron populations 1.21842 0.96699 1.00583 0.99715 1.18410 0.92191 0.91545 0.81186 0.95526 1.21657 1.35816 1.08726 0.91600 0.92324 1.25655 0.95319 0.95532 1.01781 1.70036 1.43825 1.17116 1.24564 0.85640 0.78792 0.78545 0.79071 1.19318 1.21257 1.19895 1.57549 1.69986 1.21080 1.35108 1.21417 1.01891 0.80197 1.01103 1.01183 0.73513 0.72273 0.72260 1.93511 1.69640 1.61018 1.74570 1.93564 1.75842 1.57602 1.73239 1.55975 1.62093 1.18017 1.51874 1.19661 0.95637 0.90709 0.86952 1.21076 0.95711 1.08644 0.90565 1.22412 0.97272 1.00429 0.96967 1.70306 1.24176 1.24310 1.06641 1.25705 0.86242 0.96641 1.00527 1.45536 1.15849 1.38392 1.13833 1.22393 0.79404 1.01968 1.04440 0.93297 0.93690 0.93306 0.92742 0.94074 0.89821 0.90067 0.74643 0.87879 0.89016 0.80730 0.74229 0.90037 0.86022 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.47 8.84 71.98 0.64 -4.84 16 2 C 0.27 12.95 2.49 44.24 0.11 13.06 16 3 H 0.03 1.48 6.89 -2.39 -0.02 1.46 16 4 C -0.54 -28.72 8.34 25.60 0.21 -28.51 16 5 H 0.06 3.09 7.52 -2.91 -0.02 3.07 16 6 C 0.02 0.93 5.29 84.65 0.45 1.38 16 7 N -0.92 -52.03 11.99 21.45 0.26 -51.78 16 8 Si 0.95 43.09 29.54 68.60 2.03 45.12 16 9 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 10 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 N -1.00 -38.37 3.12 -520.48 -1.62 -39.99 16 13 C 0.10 3.09 9.48 127.77 1.21 4.30 16 14 S 2.80 102.00 6.10 -56.49 -0.34 101.66 16 15 O -1.00 -37.15 16.68 -128.00 -2.14 -39.29 16 16 O -1.02 -47.40 16.70 -128.00 -2.14 -49.54 16 17 N -1.12 -29.66 6.05 -190.79 -1.15 -30.82 16 18 C 0.20 4.12 6.49 85.63 0.56 4.68 16 19 C -0.04 -0.92 6.35 40.95 0.26 -0.66 16 20 C -0.02 -0.50 11.79 83.52 0.98 0.48 16 21 N -0.54 -13.19 11.25 -200.31 -2.25 -15.44 16 22 C 0.19 3.35 12.56 180.26 2.26 5.61 16 23 N -0.45 -7.79 3.15 -537.88 -1.70 -9.48 16 24 C 0.06 0.63 11.01 127.77 1.41 2.04 16 25 H 0.05 1.92 6.88 -2.39 -0.02 1.90 16 26 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.05 2.36 6.84 -2.39 -0.02 2.34 16 28 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 29 H 0.04 1.34 8.09 -2.39 -0.02 1.32 16 30 H 0.08 1.96 7.79 -2.39 -0.02 1.95 16 31 H 0.08 2.39 6.53 -2.39 -0.02 2.37 16 32 H 0.42 10.76 8.64 -96.74 -0.84 9.92 16 33 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.09 1.73 6.98 -2.39 -0.02 1.72 16 35 H 0.18 3.78 8.06 -2.91 -0.02 3.76 16 36 H 0.24 2.00 8.06 -2.91 -0.02 1.97 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.09 1.01 7.30 -2.39 -0.02 0.99 16 Total: -1.00 -74.76 338.98 -0.74 -75.50 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.23 Total: 16.52 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 8.09 Total: -2.46 kcal Atomic # 7 Polarization: -141.04 SS G_CDS: -6.47 Total: -147.51 kcal Atomic # 8 Polarization: -84.55 SS G_CDS: -4.27 Total: -88.83 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 102.00 SS G_CDS: -0.34 Total: 101.66 kcal Total: -74.76 -0.74 -75.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290169947.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.284 kcal (2) G-P(sol) polarization free energy of solvation -74.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds