Wall clock time and date at job start Fri Apr 10 2020 17:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46898 * 2 1 4 4 C 1.53001 * 109.47267 * 240.00045 * 2 1 3 5 5 O 1.45195 * 109.47298 * 119.99815 * 2 1 3 6 6 C 1.34647 * 116.99708 * 60.00317 * 5 2 1 7 7 O 1.21508 * 119.99892 * 359.97438 * 6 5 2 8 8 N 1.34774 * 119.99493 * 179.97438 * 6 5 2 9 9 C 1.47588 * 134.48849 * 180.02562 * 8 6 5 10 10 C 1.53940 * 86.11446 * 155.35840 * 9 8 6 11 11 C 1.52998 * 113.73964 * 137.95487 * 10 9 8 12 12 H 1.09000 * 109.47627 * 61.92107 * 11 10 9 13 13 F 1.39901 * 109.47277 * 301.91694 * 11 10 9 14 14 C 1.50706 * 109.47184 * 181.91940 * 11 10 9 15 15 O 1.21295 * 119.99863 * 44.99663 * 14 11 10 16 16 N 1.34773 * 120.00080 * 225.00154 * 14 11 10 17 17 C 1.37105 * 119.99873 * 180.02562 * 16 14 11 18 18 H 1.08000 * 119.99509 * 359.71860 * 17 16 14 19 19 C 1.38950 * 120.00048 * 179.72298 * 17 16 14 20 20 N 1.31413 * 119.99930 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99918 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47151 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47086 * 119.99941 * 21 19 17 24 24 H 1.48500 * 109.46879 * 239.99997 * 21 19 17 25 25 C 1.47810 * 134.46093 * 359.86219 * 8 6 5 26 26 H 1.08996 * 109.47018 * 299.99869 * 1 2 3 27 27 H 1.09000 * 109.47383 * 60.00294 * 1 2 3 28 28 H 1.09000 * 109.46814 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46574 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46864 * 300.00024 * 3 2 1 31 31 H 1.08996 * 109.47179 * 60.00229 * 3 2 1 32 32 H 1.08999 * 109.47016 * 299.99999 * 4 2 1 33 33 H 1.09008 * 109.46963 * 59.99831 * 4 2 1 34 34 H 1.08997 * 109.47631 * 179.97438 * 4 2 1 35 35 H 1.08998 * 113.76667 * 41.04822 * 9 8 6 36 36 H 1.09002 * 113.86627 * 269.67262 * 9 8 6 37 37 H 1.09003 * 113.73875 * 269.14975 * 10 9 8 38 38 H 0.96996 * 119.99858 * 359.72084 * 16 14 11 39 39 H 0.96999 * 119.99993 * 179.97438 * 20 19 17 40 40 H 1.08999 * 113.76773 * 90.38536 * 25 8 6 41 41 H 1.08996 * 113.83812 * 318.92469 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9724 1.3383 7 8 0.9510 -2.5094 0.5039 8 7 2.0682 -2.6657 2.4166 9 6 1.8735 -4.0481 2.8955 10 6 3.1948 -3.8572 3.6620 11 6 3.1704 -4.4249 5.0826 12 1 3.0047 -5.5014 5.0409 13 9 2.1373 -3.8218 5.8081 14 6 4.4882 -4.1453 5.7580 15 8 4.9941 -3.0465 5.6693 16 7 5.1047 -5.1163 6.4606 17 6 6.3034 -4.8617 7.0755 18 1 6.7557 -3.8845 6.9931 19 6 6.9362 -5.8611 7.8046 20 7 6.3855 -7.0500 7.9052 21 14 8.5697 -5.5145 8.6419 22 1 8.9735 -4.1101 8.3772 23 1 8.4297 -5.7223 10.1056 24 1 9.6049 -6.4356 8.1079 25 6 2.9049 -2.3471 3.5927 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1393 34 1 3.1300 -0.7209 -1.2495 35 1 1.9276 -4.7980 2.1064 36 1 1.0047 -4.1727 3.5418 37 1 4.0770 -4.1607 3.0982 38 1 4.6982 -5.9938 6.5348 39 1 6.8274 -7.7477 8.4139 40 1 2.3396 -1.9688 4.4445 41 1 3.7807 -1.7418 3.3593 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290601987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:35 Heat of formation + Delta-G solvation = -152.708301 kcal Electronic energy + Delta-G solvation = -25050.505874 eV Core-core repulsion = 21073.618187 eV Total energy + Delta-G solvation = -3976.887687 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.86250 -41.89579 -40.43402 -39.67218 -37.61567 -36.05653 -35.07030 -33.40314 -32.18172 -28.80033 -28.37239 -28.31664 -27.35663 -26.53895 -23.48451 -21.83276 -21.02633 -20.27037 -20.02494 -18.90751 -18.39851 -17.88241 -17.71843 -17.24917 -16.74265 -16.62843 -16.14163 -15.70482 -15.39196 -15.32212 -15.05534 -14.82528 -14.38425 -14.21973 -13.84748 -13.63371 -13.46460 -13.34710 -13.18827 -13.02234 -12.94136 -12.90711 -12.88341 -12.50158 -12.44937 -12.37310 -12.13417 -12.06504 -11.86308 -11.56161 -11.41301 -11.09462 -10.31375 -10.08297 -9.89846 -8.51859 -6.00903 0.92607 1.34177 1.44290 1.57476 1.68776 1.85852 2.25504 2.62156 2.75839 3.14349 3.32031 3.48321 3.72674 3.76852 3.79152 3.83293 3.93456 4.09692 4.19831 4.27074 4.42119 4.53630 4.57858 4.60621 4.63100 4.67601 4.74962 4.80910 4.85920 4.89367 5.09377 5.10161 5.26915 5.31393 5.39167 5.45216 5.91408 6.48810 6.51611 7.05097 7.18701 7.43401 7.96471 8.64732 Molecular weight = 302.15amu Principal moments of inertia in cm(-1) A = 0.029734 B = 0.002835 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.453159 B = 9873.908418 C =10315.318765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.119 3.881 3 C -0.136 4.136 4 C -0.178 4.178 5 O -0.373 6.373 6 C 0.669 3.331 7 O -0.591 6.591 8 N -0.638 5.638 9 C 0.146 3.854 10 C -0.127 4.127 11 C 0.109 3.891 12 H 0.135 0.865 13 F -0.200 7.200 14 C 0.410 3.590 15 O -0.614 6.614 16 N -0.553 5.553 17 C -0.336 4.336 18 H 0.084 0.916 19 C -0.007 4.007 20 N -0.912 5.912 21 Si 0.992 3.008 22 H -0.272 1.272 23 H -0.272 1.272 24 H -0.270 1.270 25 C 0.127 3.873 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.108 0.892 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.125 0.875 38 H 0.400 0.600 39 H 0.281 0.719 40 H 0.092 0.908 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.870 7.822 -13.683 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.083 3.917 3 C -0.193 4.193 4 C -0.235 4.235 5 O -0.288 6.288 6 C 0.426 3.574 7 O -0.482 6.482 8 N -0.380 5.380 9 C 0.026 3.974 10 C -0.147 4.147 11 C 0.069 3.931 12 H 0.152 0.848 13 F -0.180 7.180 14 C 0.196 3.804 15 O -0.500 6.500 16 N -0.189 5.189 17 C -0.465 4.465 18 H 0.102 0.898 19 C -0.208 4.208 20 N -0.552 5.552 21 Si 0.816 3.184 22 H -0.196 1.196 23 H -0.197 1.197 24 H -0.195 1.195 25 C 0.004 3.996 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.126 0.874 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.143 0.857 38 H 0.235 0.765 39 H 0.090 0.910 40 H 0.110 0.890 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.791 8.409 -14.112 19.124 hybrid contribution 0.524 -0.376 0.729 0.974 sum -9.267 8.034 -13.382 18.152 Atomic orbital electron populations 1.22453 0.93643 1.03658 1.03651 1.22511 0.94921 0.92752 0.81525 1.21890 1.02259 0.90743 1.04378 1.22464 1.01448 1.02236 0.97342 1.86358 1.71824 1.22977 1.47604 1.17645 0.77844 0.80534 0.81415 1.90860 1.42403 1.71016 1.43962 1.48893 1.53596 1.15124 1.20403 1.23377 0.96607 0.81018 0.96395 1.23495 1.00639 0.96551 0.94019 1.21285 0.82169 1.00121 0.89484 0.84761 1.92811 1.59351 1.86146 1.79740 1.20897 0.88888 0.85646 0.85000 1.90531 1.68579 1.24813 1.66101 1.42030 1.19892 1.13112 1.43839 1.19753 0.98165 0.99346 1.29264 0.89815 1.26063 1.02861 0.94431 0.97444 1.69659 1.40882 1.03394 1.41287 0.84873 0.77130 0.78442 0.77947 1.19633 1.19713 1.19498 1.23144 0.93500 0.96810 0.86102 0.92235 0.88578 0.91984 0.91617 0.87395 0.91492 0.91935 0.88592 0.92344 0.87312 0.87369 0.85665 0.76546 0.90990 0.89023 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.59 8.37 71.98 0.60 -2.99 16 2 C 0.12 2.60 1.13 -10.79 -0.01 2.58 16 3 C -0.14 -2.11 8.85 71.98 0.64 -1.47 16 4 C -0.18 -3.67 8.37 71.98 0.60 -3.07 16 5 O -0.37 -10.82 9.87 -55.56 -0.55 -11.36 16 6 C 0.67 20.87 8.22 129.79 1.07 21.94 16 7 O -0.59 -19.79 12.61 19.81 0.25 -19.54 16 8 N -0.64 -18.37 3.61 -966.46 -3.49 -21.86 16 9 C 0.15 3.35 8.32 86.48 0.72 4.07 16 10 C -0.13 -3.44 3.58 -10.14 -0.04 -3.48 16 11 C 0.11 3.37 3.79 29.85 0.11 3.48 16 12 H 0.13 3.19 8.00 -2.39 -0.02 3.17 16 13 F -0.20 -6.49 15.50 44.97 0.70 -5.80 16 14 C 0.41 17.89 7.12 87.66 0.62 18.52 16 15 O -0.61 -31.29 15.73 -3.08 -0.05 -31.34 16 16 N -0.55 -26.36 5.29 -306.97 -1.62 -27.98 16 17 C -0.34 -17.97 9.68 84.04 0.81 -17.16 16 18 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 19 C -0.01 -0.35 5.50 84.93 0.47 0.12 16 20 N -0.91 -46.59 13.05 21.66 0.28 -46.31 16 21 Si 0.99 40.81 29.55 68.60 2.03 42.84 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 24 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 25 C 0.13 3.79 7.72 86.43 0.67 4.45 16 26 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 1.60 5.88 -2.39 -0.01 1.59 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.63 5.88 -2.39 -0.01 1.62 16 33 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.11 2.20 7.84 -2.39 -0.02 2.18 16 37 H 0.13 3.34 8.14 -2.39 -0.02 3.33 16 38 H 0.40 17.86 7.79 -92.71 -0.72 17.14 16 39 H 0.28 13.38 8.31 -92.71 -0.77 12.61 16 40 H 0.09 2.82 7.19 -2.39 -0.02 2.80 16 41 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -67.04 346.65 4.14 -62.90 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: 0.33 Total: 31.44 kcal Atomic # 6 Polarization: 20.74 SS G_CDS: 6.27 Total: 27.01 kcal Atomic # 7 Polarization: -91.32 SS G_CDS: -4.83 Total: -96.15 kcal Atomic # 8 Polarization: -61.90 SS G_CDS: -0.35 Total: -62.25 kcal Atomic # 9 Polarization: -6.49 SS G_CDS: 0.70 Total: -5.80 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -67.04 4.14 -62.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290601987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.807 kcal (2) G-P(sol) polarization free energy of solvation -67.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds