Wall clock time and date at job start Fri Apr 10 2020 17:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34223 * 117.00015 * 2 1 4 4 O 1.20820 * 120.00035 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99990 * 179.97438 * 3 2 1 6 6 H 1.09004 * 115.54909 * 24.91513 * 5 3 2 7 7 C 1.53003 * 117.51710 * 170.60988 * 5 3 2 8 8 C 1.53000 * 117.50296 * 239.24200 * 5 3 2 9 9 H 1.08998 * 117.49940 * 144.97457 * 8 5 3 10 10 C 1.50708 * 117.49504 * 359.97438 * 8 5 3 11 11 O 1.21283 * 119.99701 * 263.79385 * 10 8 5 12 12 N 1.34770 * 119.99614 * 83.79429 * 10 8 5 13 13 C 1.46503 * 119.99793 * 184.57738 * 12 10 8 14 14 C 1.50699 * 109.47065 * 270.00374 * 13 12 10 15 15 H 1.07998 * 120.00120 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00129 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99817 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00227 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47376 * 179.97438 * 18 16 14 20 20 H 1.48506 * 109.47176 * 60.00229 * 18 16 14 21 21 H 1.48494 * 109.47405 * 300.00226 * 18 16 14 22 22 C 1.39918 * 120.00541 * 4.58177 * 12 10 8 23 23 C 1.38879 * 120.07395 * 247.50950 * 22 12 10 24 24 C 1.38110 * 119.93256 * 179.73998 * 23 22 12 25 25 C 1.38280 * 120.06782 * 0.53067 * 24 23 22 26 26 C 1.38286 * 120.14416 * 359.72518 * 25 24 23 27 27 C 1.38110 * 120.06811 * 0.02562 * 26 25 24 28 28 H 1.09005 * 109.46695 * 60.00618 * 1 2 3 29 29 H 1.09001 * 109.47216 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47035 * 300.00268 * 1 2 3 31 31 H 1.08999 * 117.49979 * 359.97438 * 7 5 3 32 32 H 1.09001 * 117.50067 * 214.97041 * 7 5 3 33 33 H 1.08997 * 109.47358 * 150.00259 * 13 12 10 34 34 H 1.09008 * 109.46861 * 30.00273 * 13 12 10 35 35 H 0.97001 * 119.99805 * 359.97438 * 17 16 14 36 36 H 1.08000 * 120.02887 * 359.97438 * 23 22 12 37 37 H 1.07999 * 119.96492 * 180.25651 * 24 23 22 38 38 H 1.08001 * 119.92950 * 179.74084 * 25 24 23 39 39 H 1.07997 * 119.96277 * 179.97438 * 26 25 24 40 40 H 1.08003 * 120.03483 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0827 0.4086 -0.4133 7 6 4.2023 2.6487 -0.2208 8 6 4.2351 2.0051 1.1669 9 1 5.1912 1.6191 1.5206 10 6 3.3384 2.5911 2.2270 11 8 3.0224 3.7608 2.1751 12 7 2.8877 1.8151 3.2325 13 6 1.9367 2.3571 4.2062 14 6 2.6912 2.9730 5.3562 15 1 3.7711 2.9622 5.3610 16 6 2.0029 3.5512 6.4016 17 7 0.6878 3.5649 6.3955 18 14 2.9382 4.3140 7.8274 19 1 1.9742 4.8646 8.8137 20 1 3.8066 5.4073 7.3214 21 1 3.7773 3.2773 8.4802 22 6 3.3280 0.4920 3.3466 23 6 2.4415 -0.5569 3.1400 24 6 2.8805 -1.8618 3.2481 25 6 4.1988 -2.1247 3.5726 26 6 5.0829 -1.0826 3.7842 27 6 4.6513 0.2246 3.6725 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.5322 3.4957 -0.3674 32 1 5.1370 2.6864 -0.7803 33 1 1.2999 1.5543 4.5778 34 1 1.3201 3.1178 3.7272 35 1 0.2022 3.1684 5.6553 36 1 1.4106 -0.3521 2.8913 37 1 2.1925 -2.6779 3.0834 38 1 4.5387 -3.1460 3.6606 39 1 6.1117 -1.2912 4.0378 40 1 5.3421 1.0380 3.8383 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078999939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:08 Heat of formation + Delta-G solvation = -58.289668 kcal Electronic energy + Delta-G solvation = -25714.998827 eV Core-core repulsion = 22075.256002 eV Total energy + Delta-G solvation = -3639.742825 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.85626 -39.73747 -38.37904 -36.82670 -35.69813 -34.89603 -32.88950 -30.73866 -29.35973 -28.24444 -27.19798 -24.84341 -24.03806 -22.76212 -22.27889 -21.76754 -20.48898 -19.14425 -18.12231 -17.21352 -16.93439 -16.38664 -16.19470 -15.75342 -15.42772 -15.18335 -14.78017 -14.34013 -13.75815 -13.68099 -13.35054 -13.20579 -13.07741 -13.01380 -12.46906 -12.28535 -12.12208 -11.89033 -11.58207 -11.40856 -11.02693 -10.88338 -10.78265 -10.74341 -10.70998 -10.58496 -10.38131 -10.10003 -9.50691 -9.21335 -8.72140 -8.57053 -8.39279 -7.66980 -6.40193 -4.11836 1.52665 1.61217 2.07920 2.63033 3.07303 3.42675 3.46707 3.49027 3.64545 3.84574 3.98772 4.53050 4.54358 4.65571 4.72294 4.88727 5.09257 5.12065 5.13583 5.19181 5.19809 5.30066 5.35932 5.47488 5.60912 5.61682 5.64519 5.77530 5.99356 6.07317 6.21313 6.40234 6.54967 6.68474 6.72283 6.78124 7.04316 7.07856 7.34137 7.81823 7.98083 8.19043 8.39032 8.73209 8.86048 9.56983 10.97241 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.012765 B = 0.006067 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.934817 B = 4614.237255 C = 5300.608242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.352 6.352 3 C 0.484 3.516 4 O -0.488 6.488 5 C -0.152 4.152 6 H 0.140 0.860 7 C -0.115 4.115 8 C -0.149 4.149 9 H 0.139 0.861 10 C 0.537 3.463 11 O -0.506 6.506 12 N -0.554 5.554 13 C 0.241 3.759 14 C -0.604 4.604 15 H 0.052 0.948 16 C 0.021 3.979 17 N -0.908 5.908 18 Si 1.072 2.928 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.287 1.287 22 C 0.164 3.836 23 C -0.118 4.118 24 C -0.105 4.105 25 C -0.133 4.133 26 C -0.110 4.110 27 C -0.124 4.124 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.023 0.977 34 H 0.035 0.965 35 H 0.267 0.733 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.933 -13.328 -12.740 19.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.326 3.674 4 O -0.374 6.374 5 C -0.171 4.171 6 H 0.158 0.842 7 C -0.152 4.152 8 C -0.170 4.170 9 H 0.157 0.843 10 C 0.323 3.677 11 O -0.380 6.380 12 N -0.282 5.282 13 C 0.123 3.877 14 C -0.643 4.643 15 H 0.071 0.929 16 C -0.183 4.183 17 N -0.543 5.543 18 Si 0.899 3.101 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.214 1.214 22 C 0.072 3.928 23 C -0.138 4.138 24 C -0.124 4.124 25 C -0.151 4.151 26 C -0.128 4.128 27 C -0.143 4.143 28 H 0.080 0.920 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.041 0.959 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.268 -11.531 -11.302 17.320 hybrid contribution 0.013 -0.956 -1.282 1.600 sum 6.281 -12.487 -12.584 18.808 Atomic orbital electron populations 1.23270 0.76321 1.03534 1.02728 1.86459 1.23259 1.32948 1.84213 1.22485 0.90394 0.81608 0.72898 1.90749 1.66499 1.36178 1.44006 1.21754 0.89031 1.00297 1.06056 0.84228 1.23145 1.02487 0.93842 0.95714 1.22479 1.01096 1.03273 0.90185 0.84335 1.19285 0.80670 0.86139 0.81620 1.90709 1.56255 1.15508 1.75548 1.45684 1.45681 1.08965 1.27847 1.19458 0.87742 0.93976 0.86530 1.22167 0.94664 1.41488 1.05933 0.92919 1.25817 0.96437 0.95373 1.00704 1.70806 1.06766 1.42854 1.33916 0.83505 0.74914 0.76312 0.75328 1.20591 1.21321 1.21392 1.17708 0.92726 0.84572 0.97812 1.21201 0.99647 0.92311 1.00653 1.20916 0.95890 0.95811 0.99784 1.21049 0.93728 0.98792 1.01544 1.20959 0.99565 0.92132 1.00176 1.21340 0.95764 0.97145 1.00078 0.92011 0.88065 0.91733 0.86244 0.86387 0.95908 0.94658 0.92326 0.86566 0.86144 0.86332 0.86063 0.85965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.48 16 2 O -0.35 -4.98 10.57 -39.24 -0.41 -5.40 16 3 C 0.48 7.91 7.00 36.01 0.25 8.16 16 4 O -0.49 -9.77 15.43 -18.75 -0.29 -10.06 16 5 C -0.15 -2.05 6.30 -91.77 -0.58 -2.63 16 6 H 0.14 1.38 8.14 -51.93 -0.42 0.96 16 7 C -0.11 -1.52 9.56 -26.73 -0.26 -1.77 16 8 C -0.15 -2.33 4.74 -91.76 -0.43 -2.77 16 9 H 0.14 1.79 7.27 -51.93 -0.38 1.42 16 10 C 0.54 11.77 5.79 -10.98 -0.06 11.71 16 11 O -0.51 -13.39 16.24 5.56 0.09 -13.30 16 12 N -0.55 -12.43 2.51 -114.73 -0.29 -12.72 16 13 C 0.24 6.53 4.38 -5.19 -0.02 6.51 16 14 C -0.60 -17.74 9.39 -34.44 -0.32 -18.06 16 15 H 0.05 1.55 7.81 -52.49 -0.41 1.14 16 16 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 17 N -0.91 -28.21 13.65 55.43 0.76 -27.45 16 18 Si 1.07 26.11 29.90 -169.99 -5.08 21.03 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.16 3.05 4.46 -83.69 -0.37 2.67 16 23 C -0.12 -1.96 9.67 -39.39 -0.38 -2.34 16 24 C -0.11 -1.40 10.04 -39.61 -0.40 -1.80 16 25 C -0.13 -1.61 10.04 -39.55 -0.40 -2.01 16 26 C -0.11 -1.42 10.04 -39.61 -0.40 -1.82 16 27 C -0.12 -2.00 8.55 -39.39 -0.34 -2.34 16 28 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 29 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 31 H 0.12 1.91 7.50 -51.93 -0.39 1.52 16 32 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.02 0.63 7.72 -51.93 -0.40 0.23 16 34 H 0.04 1.07 7.36 -51.92 -0.38 0.69 16 35 H 0.27 8.26 7.22 -40.82 -0.29 7.97 16 36 H 0.12 1.97 8.06 -52.49 -0.42 1.54 16 37 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 40 H 0.12 1.97 8.06 -52.48 -0.42 1.55 16 LS Contribution 351.44 15.07 5.30 5.30 Total: -1.00 -37.01 351.44 -7.95 -44.96 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.28 Total: 2.12 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -2.74 Total: -4.47 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.47 Total: -40.17 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.61 Total: -28.76 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -5.08 Total: 21.03 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -37.01 -7.95 -44.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078999939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.329 kcal (2) G-P(sol) polarization free energy of solvation -37.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds