Wall clock time and date at job start Fri Apr 10 2020 17:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38297 * 119.93094 * 2 1 4 4 C 1.38093 * 120.07501 * 179.70359 * 3 2 1 5 5 C 1.38893 * 119.92223 * 0.56724 * 4 3 2 6 6 N 1.39927 * 120.07046 * 179.72231 * 5 4 3 7 7 C 1.46758 * 124.35092 * 173.91560 * 6 5 4 8 8 C 1.54487 * 105.47264 * 197.03870 * 7 6 5 9 9 C 1.54623 * 101.76292 * 334.58434 * 8 7 6 10 10 H 1.09003 * 110.48955 * 266.11506 * 9 8 7 11 11 C 1.50705 * 110.59428 * 143.53382 * 9 8 7 12 12 O 1.21204 * 120.00195 * 1.91269 * 11 9 8 13 13 O 1.34315 * 119.99708 * 181.91535 * 11 9 8 14 14 C 1.34919 * 116.99809 * 179.97438 * 13 11 9 15 15 H 1.08004 * 120.00132 * 359.97438 * 14 13 11 16 16 C 1.38756 * 119.99738 * 180.02562 * 14 13 11 17 17 N 1.31438 * 120.00525 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00048 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46921 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47583 * 119.99299 * 18 16 14 21 21 H 1.48498 * 109.47197 * 240.00031 * 18 16 14 22 22 C 1.34419 * 124.34752 * 353.94405 * 6 5 4 23 23 O 1.21294 * 124.94170 * 359.53307 * 22 6 5 24 24 C 1.38857 * 119.86182 * 359.45542 * 5 4 3 25 25 C 1.38134 * 119.92802 * 0.27184 * 24 5 4 26 26 C 1.50694 * 119.96238 * 180.02562 * 25 24 5 27 27 H 1.09004 * 109.46599 * 269.98073 * 1 2 3 28 28 H 1.08993 * 109.47016 * 29.97756 * 1 2 3 29 29 H 1.08996 * 109.47003 * 149.98536 * 1 2 3 30 30 H 1.08003 * 119.96648 * 0.02562 * 3 2 1 31 31 H 1.07991 * 120.03961 * 180.31804 * 4 3 2 32 32 H 1.08993 * 110.24953 * 316.03987 * 7 6 5 33 33 H 1.09003 * 110.24518 * 77.95387 * 7 6 5 34 34 H 1.09004 * 110.96606 * 216.46759 * 8 7 6 35 35 H 1.09001 * 110.96673 * 92.70940 * 8 7 6 36 36 H 0.96997 * 120.00085 * 180.02562 * 17 16 14 37 37 H 1.08003 * 120.03536 * 180.25185 * 24 5 4 38 38 H 1.09003 * 109.47134 * 90.00385 * 26 25 24 39 39 H 1.09004 * 109.47000 * 209.99771 * 26 25 24 40 40 H 1.08995 * 109.47559 * 329.99681 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1985 0.0000 4 6 3.5780 1.2020 0.0062 5 6 4.2739 0.0000 0.0005 6 7 5.6731 -0.0001 0.0009 7 6 6.5012 -1.2055 0.1236 8 6 7.9089 -0.7009 0.5112 9 6 7.8979 0.7351 -0.0622 10 1 8.3282 0.7493 -1.0636 11 6 8.6485 1.6744 0.8463 12 8 9.1843 1.2504 1.8474 13 8 8.7237 2.9816 0.5466 14 6 9.4101 3.7675 1.4018 15 1 9.8681 3.3383 2.2807 16 6 9.5266 5.1276 1.1528 17 7 8.9688 5.6502 0.0835 18 14 10.4775 6.2158 2.3365 19 1 11.0046 5.3905 3.4529 20 1 11.6077 6.8585 1.6191 21 1 9.5756 7.2634 2.8791 22 6 6.4316 1.1041 -0.1106 23 8 6.0028 2.2321 -0.2330 24 6 3.5781 -1.2017 0.0000 25 6 2.1968 -1.1983 -0.0004 26 6 1.4410 -2.5020 -0.0003 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5140 30 1 1.6554 2.1329 0.0004 31 1 4.1162 2.1382 0.0114 32 1 6.1061 -1.8568 0.9032 33 1 6.5380 -1.7363 -0.8278 34 1 8.6835 -1.3041 0.0377 35 1 8.0341 -0.6877 1.5939 36 1 9.0506 6.6009 -0.0907 37 1 4.1164 -2.1380 -0.0003 38 1 1.2583 -2.8160 1.0274 39 1 0.4889 -2.3700 -0.5145 40 1 2.0287 -3.2628 -0.5138 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095955554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:21 Heat of formation + Delta-G solvation = -82.073040 kcal Electronic energy + Delta-G solvation = -24400.217702 eV Core-core repulsion = 20759.443552 eV Total energy + Delta-G solvation = -3640.774150 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.11411 -39.34322 -38.47740 -36.48136 -35.26516 -33.91271 -32.30060 -32.12764 -30.83901 -28.22668 -27.53062 -26.02340 -25.31824 -22.98843 -22.26041 -21.39024 -20.02745 -19.06155 -17.72326 -17.25211 -17.10092 -16.37377 -15.72213 -15.46825 -14.93974 -14.55886 -14.34377 -14.31045 -14.21482 -13.87862 -13.68469 -13.26355 -12.94048 -12.92846 -12.64893 -12.61249 -12.52285 -12.08056 -11.93772 -11.87434 -11.46467 -11.30897 -11.19914 -11.07109 -10.93863 -10.42734 -10.38171 -9.90873 -9.80663 -9.38011 -9.08165 -8.73434 -8.55655 -7.71383 -6.37585 -4.05886 1.30550 1.41273 2.63664 2.84806 3.11732 3.20837 3.28366 3.46906 3.81777 3.91477 4.33061 4.39453 4.57873 4.74482 4.82943 4.96332 4.98307 5.05437 5.07078 5.17692 5.23802 5.34808 5.36616 5.48233 5.52756 5.55493 5.65248 5.69690 5.80664 5.85510 5.88105 6.05150 6.17944 6.30530 6.44644 6.65489 6.68321 6.69929 7.13169 7.18954 7.40159 7.95003 8.26118 8.66161 9.08900 9.84665 10.79132 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.003569 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.810552 B = 7844.428027 C = 8790.877300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.159 4.159 5 C 0.175 3.825 6 N -0.565 5.565 7 C 0.098 3.902 8 C -0.116 4.116 9 C -0.107 4.107 10 H 0.135 0.865 11 C 0.405 3.595 12 O -0.552 6.552 13 O -0.191 6.191 14 C -0.384 4.384 15 H 0.097 0.903 16 C 0.044 3.956 17 N -0.853 5.853 18 Si 0.943 3.057 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.276 1.276 22 C 0.525 3.475 23 O -0.467 6.467 24 C -0.160 4.160 25 C -0.064 4.064 26 C -0.114 4.114 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.125 0.875 31 H 0.157 0.843 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.269 0.731 37 H 0.124 0.876 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.147 -16.215 -2.501 21.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.123 4.123 3 C -0.104 4.104 4 C -0.179 4.179 5 C 0.081 3.919 6 N -0.289 5.289 7 C -0.024 4.024 8 C -0.153 4.153 9 C -0.129 4.129 10 H 0.153 0.847 11 C 0.250 3.750 12 O -0.450 6.450 13 O -0.096 6.096 14 C -0.460 4.460 15 H 0.114 0.886 16 C -0.162 4.162 17 N -0.488 5.488 18 Si 0.767 3.233 19 H -0.189 1.189 20 H -0.201 1.201 21 H -0.201 1.201 22 C 0.312 3.688 23 O -0.337 6.337 24 C -0.181 4.181 25 C -0.064 4.064 26 C -0.170 4.170 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.143 0.857 31 H 0.174 0.826 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.142 0.858 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.227 -15.430 -2.437 20.469 hybrid contribution 0.560 0.509 0.454 0.883 sum -12.667 -14.921 -1.983 19.673 Atomic orbital electron populations 1.20776 0.91491 1.02467 1.01980 1.19680 0.95874 0.92628 1.04099 1.20916 0.93418 0.97488 0.98605 1.21712 0.94592 0.98758 1.02792 1.17768 0.81009 0.94556 0.98541 1.45833 1.03788 1.09379 1.69939 1.22290 0.90636 0.87004 1.02446 1.22621 0.95403 0.92751 1.04555 1.21547 0.93362 0.95484 1.02551 0.84710 1.22051 0.82914 0.84080 0.85911 1.90549 1.48482 1.77789 1.28183 1.83931 1.61589 1.15707 1.48373 1.21319 1.31194 0.88472 1.05052 0.88553 1.25382 0.97193 0.96219 0.97362 1.70039 1.40665 1.13101 1.25033 0.85621 0.78792 0.79366 0.79495 1.18902 1.20105 1.20111 1.20611 0.88272 0.84048 0.75873 1.90739 1.77039 1.20792 1.45167 1.20545 0.93699 0.96057 1.07768 1.19435 0.92691 0.94880 0.99444 1.20827 0.99998 0.93952 1.02259 0.91571 0.91852 0.91515 0.85735 0.82580 0.89527 0.90135 0.88241 0.87766 0.92058 0.85836 0.91210 0.91147 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.60 36.01 0.35 -0.60 16 2 C -0.12 -1.43 5.88 -104.59 -0.62 -2.05 16 3 C -0.09 -1.17 9.69 -39.61 -0.38 -1.56 16 4 C -0.16 -2.63 9.28 -39.39 -0.37 -3.00 16 5 C 0.18 2.70 6.60 -83.69 -0.55 2.15 16 6 N -0.56 -8.89 3.14 -112.27 -0.35 -9.24 16 7 C 0.10 1.11 6.27 -3.12 -0.02 1.09 16 8 C -0.12 -1.55 6.47 -25.10 -0.16 -1.71 16 9 C -0.11 -1.98 3.43 -91.78 -0.31 -2.30 16 10 H 0.14 2.17 8.14 -51.93 -0.42 1.75 16 11 C 0.40 10.19 7.19 36.01 0.26 10.45 16 12 O -0.55 -14.61 14.75 -19.05 -0.28 -14.89 16 13 O -0.19 -5.70 9.40 -22.30 -0.21 -5.91 16 14 C -0.38 -11.71 9.65 30.92 0.30 -11.41 16 15 H 0.10 2.92 6.86 -52.48 -0.36 2.56 16 16 C 0.04 1.27 5.49 -17.53 -0.10 1.18 16 17 N -0.85 -25.93 13.67 55.48 0.76 -25.18 16 18 Si 0.94 21.79 29.55 -169.99 -5.02 16.76 16 19 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 C 0.52 10.41 7.34 -10.86 -0.08 10.33 16 23 O -0.47 -11.26 14.36 5.14 0.07 -11.19 16 24 C -0.16 -1.97 9.06 -39.39 -0.36 -2.32 16 25 C -0.06 -0.72 5.88 -104.65 -0.62 -1.33 16 26 C -0.11 -0.89 9.60 36.00 0.35 -0.54 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 29 H 0.07 0.48 5.94 -51.93 -0.31 0.17 16 30 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 31 H 0.16 3.05 5.27 -52.49 -0.28 2.78 16 32 H 0.09 0.80 7.70 -51.93 -0.40 0.40 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.10 1.59 7.04 -51.93 -0.37 1.22 16 36 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.12 1.21 7.02 -52.48 -0.37 0.84 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.47 5.94 -51.93 -0.31 0.16 16 40 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 LS Contribution 336.60 15.07 5.07 5.07 Total: -1.00 -36.93 336.60 -7.17 -44.10 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -4.90 Total: 2.11 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -2.31 Total: -1.64 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.41 Total: -34.41 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -0.42 Total: -31.99 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.93 -7.17 -44.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095955554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.975 kcal (2) G-P(sol) polarization free energy of solvation -36.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds