Wall clock time and date at job start Fri Apr 10 2020 17:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38297 * 119.93094 * 2 1 4 4 C 1.38093 * 120.07501 * 179.70359 * 3 2 1 5 5 C 1.38893 * 119.92223 * 0.56724 * 4 3 2 6 6 N 1.39927 * 120.07046 * 179.72231 * 5 4 3 7 7 C 1.46758 * 124.35092 * 173.91560 * 6 5 4 8 8 C 1.54487 * 105.47264 * 197.03870 * 7 6 5 9 9 C 1.54623 * 101.76292 * 334.58434 * 8 7 6 10 10 H 1.09003 * 110.48955 * 266.11506 * 9 8 7 11 11 C 1.50705 * 110.59428 * 143.53382 * 9 8 7 12 12 O 1.21204 * 120.00195 * 1.91269 * 11 9 8 13 13 O 1.34315 * 119.99708 * 181.91535 * 11 9 8 14 14 C 1.34919 * 116.99809 * 179.97438 * 13 11 9 15 15 H 1.08004 * 120.00132 * 359.97438 * 14 13 11 16 16 C 1.38756 * 119.99738 * 180.02562 * 14 13 11 17 17 N 1.31438 * 120.00525 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00048 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46921 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47583 * 119.99299 * 18 16 14 21 21 H 1.48498 * 109.47197 * 240.00031 * 18 16 14 22 22 C 1.34419 * 124.34752 * 353.94405 * 6 5 4 23 23 O 1.21294 * 124.94170 * 359.53307 * 22 6 5 24 24 C 1.38857 * 119.86182 * 359.45542 * 5 4 3 25 25 C 1.38134 * 119.92802 * 0.27184 * 24 5 4 26 26 C 1.50694 * 119.96238 * 180.02562 * 25 24 5 27 27 H 1.09004 * 109.46599 * 269.98073 * 1 2 3 28 28 H 1.08993 * 109.47016 * 29.97756 * 1 2 3 29 29 H 1.08996 * 109.47003 * 149.98536 * 1 2 3 30 30 H 1.08003 * 119.96648 * 0.02562 * 3 2 1 31 31 H 1.07991 * 120.03961 * 180.31804 * 4 3 2 32 32 H 1.08993 * 110.24953 * 316.03987 * 7 6 5 33 33 H 1.09003 * 110.24518 * 77.95387 * 7 6 5 34 34 H 1.09004 * 110.96606 * 216.46759 * 8 7 6 35 35 H 1.09001 * 110.96673 * 92.70940 * 8 7 6 36 36 H 0.96997 * 120.00085 * 180.02562 * 17 16 14 37 37 H 1.08003 * 120.03536 * 180.25185 * 24 5 4 38 38 H 1.09003 * 109.47134 * 90.00385 * 26 25 24 39 39 H 1.09004 * 109.47000 * 209.99771 * 26 25 24 40 40 H 1.08995 * 109.47559 * 329.99681 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1985 0.0000 4 6 3.5780 1.2020 0.0062 5 6 4.2739 0.0000 0.0005 6 7 5.6731 -0.0001 0.0009 7 6 6.5012 -1.2055 0.1236 8 6 7.9089 -0.7009 0.5112 9 6 7.8979 0.7351 -0.0622 10 1 8.3282 0.7493 -1.0636 11 6 8.6485 1.6744 0.8463 12 8 9.1843 1.2504 1.8474 13 8 8.7237 2.9816 0.5466 14 6 9.4101 3.7675 1.4018 15 1 9.8681 3.3383 2.2807 16 6 9.5266 5.1276 1.1528 17 7 8.9688 5.6502 0.0835 18 14 10.4775 6.2158 2.3365 19 1 11.0046 5.3905 3.4529 20 1 11.6077 6.8585 1.6191 21 1 9.5756 7.2634 2.8791 22 6 6.4316 1.1041 -0.1106 23 8 6.0028 2.2321 -0.2330 24 6 3.5781 -1.2017 0.0000 25 6 2.1968 -1.1983 -0.0004 26 6 1.4410 -2.5020 -0.0003 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5140 30 1 1.6554 2.1329 0.0004 31 1 4.1162 2.1382 0.0114 32 1 6.1061 -1.8568 0.9032 33 1 6.5380 -1.7363 -0.8278 34 1 8.6835 -1.3041 0.0377 35 1 8.0341 -0.6877 1.5939 36 1 9.0506 6.6009 -0.0907 37 1 4.1164 -2.1380 -0.0003 38 1 1.2583 -2.8160 1.0274 39 1 0.4889 -2.3700 -0.5145 40 1 2.0287 -3.2628 -0.5138 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095955554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:20 Heat of formation + Delta-G solvation = -106.093224 kcal Electronic energy + Delta-G solvation = -24401.259295 eV Core-core repulsion = 20759.443552 eV Total energy + Delta-G solvation = -3641.815743 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.47517 -40.95247 -39.95391 -38.00954 -37.24433 -35.08437 -34.35890 -33.25488 -31.94478 -29.52710 -28.44507 -27.41843 -26.93432 -24.31875 -23.47044 -22.50677 -21.53040 -20.49195 -19.92962 -18.83597 -18.45065 -17.89627 -17.06572 -16.69612 -16.42906 -16.33147 -16.17524 -15.48694 -15.26842 -15.05574 -14.94671 -14.60680 -14.43985 -13.98623 -13.88208 -13.64045 -13.51966 -13.39658 -13.16161 -13.02906 -12.86634 -12.74423 -12.43283 -12.24723 -12.17256 -12.11943 -12.00123 -11.97084 -11.24827 -10.94787 -10.76697 -10.74386 -9.72515 -8.81541 -8.57692 -6.39397 0.18772 0.38538 1.06438 1.28370 1.35602 1.49390 1.51207 1.76646 2.07748 2.59946 2.78436 2.90588 3.10657 3.32891 3.75776 3.87511 3.92979 3.98139 4.11921 4.24389 4.33988 4.35656 4.46835 4.55876 4.69195 4.77380 4.82460 4.83135 4.90196 4.93157 4.99157 5.07040 5.09802 5.13453 5.23621 5.29044 5.49804 5.58106 5.74171 5.76182 5.94212 6.12379 6.53122 6.84422 6.85650 7.68758 8.62924 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.003569 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.810552 B = 7844.428027 C = 8790.877300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.119 4.119 3 C -0.099 4.099 4 C -0.195 4.195 5 C 0.147 3.853 6 N -0.556 5.556 7 C 0.098 3.902 8 C -0.104 4.104 9 C -0.108 4.108 10 H 0.159 0.841 11 C 0.404 3.596 12 O -0.568 6.568 13 O -0.231 6.231 14 C -0.425 4.425 15 H 0.086 0.914 16 C -0.008 4.008 17 N -0.899 5.899 18 Si 1.022 2.978 19 H -0.260 1.260 20 H -0.255 1.255 21 H -0.263 1.263 22 C 0.512 3.488 23 O -0.531 6.531 24 C -0.148 4.148 25 C -0.063 4.063 26 C -0.112 4.112 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.129 0.871 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.142 0.858 35 H 0.083 0.917 36 H 0.279 0.721 37 H 0.159 0.841 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.340 -19.839 -2.370 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.120 4.120 3 C -0.118 4.118 4 C -0.216 4.216 5 C 0.053 3.947 6 N -0.280 5.280 7 C -0.022 4.022 8 C -0.141 4.141 9 C -0.130 4.130 10 H 0.176 0.824 11 C 0.250 3.750 12 O -0.467 6.467 13 O -0.138 6.138 14 C -0.500 4.500 15 H 0.104 0.896 16 C -0.208 4.208 17 N -0.536 5.536 18 Si 0.840 3.160 19 H -0.183 1.183 20 H -0.179 1.179 21 H -0.187 1.187 22 C 0.300 3.700 23 O -0.406 6.406 24 C -0.168 4.168 25 C -0.063 4.063 26 C -0.168 4.168 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.147 0.853 31 H 0.130 0.870 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.160 0.840 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.177 0.823 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.444 -19.141 -2.308 24.090 hybrid contribution 0.775 1.462 0.405 1.704 sum -13.669 -17.679 -1.903 22.428 Atomic orbital electron populations 1.20859 0.88880 1.03806 1.03059 1.20108 0.97784 0.91980 1.02108 1.21057 0.92433 0.99107 0.99193 1.21552 0.95995 0.98105 1.05923 1.17990 0.80789 0.95311 1.00575 1.45873 1.04313 1.09513 1.68281 1.22726 0.88150 0.85519 1.05815 1.22741 0.98527 0.89464 1.03368 1.21793 0.91928 0.96598 1.02650 0.82377 1.23356 0.81798 0.83487 0.86317 1.90507 1.49028 1.77932 1.29208 1.83972 1.62715 1.17932 1.49148 1.21571 1.32964 0.89795 1.05705 0.89630 1.26717 0.97694 0.97110 0.99319 1.70149 1.42201 1.14071 1.27170 0.84522 0.77660 0.76927 0.76880 1.18341 1.17864 1.18744 1.20884 0.89172 0.84268 0.75718 1.90720 1.78068 1.23475 1.48370 1.20914 0.94280 0.95794 1.05793 1.19983 0.92651 0.96374 0.97320 1.20922 1.00364 0.91944 1.03550 0.90460 0.91537 0.89250 0.85318 0.86958 0.86439 0.85816 0.83981 0.89843 0.91215 0.82331 0.89872 0.89713 0.90020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 9.60 71.24 0.68 -0.87 16 2 C -0.12 -2.58 5.88 -19.84 -0.12 -2.70 16 3 C -0.10 -2.83 9.69 22.25 0.22 -2.62 16 4 C -0.20 -7.00 9.28 22.39 0.21 -6.79 16 5 C 0.15 4.50 6.60 38.15 0.25 4.75 16 6 N -0.56 -17.29 3.14 -627.68 -1.97 -19.26 16 7 C 0.10 1.84 6.27 86.84 0.54 2.38 16 8 C -0.10 -2.54 6.47 31.65 0.20 -2.34 16 9 C -0.11 -4.05 3.43 -11.55 -0.04 -4.09 16 10 H 0.16 5.11 8.14 -2.39 -0.02 5.09 16 11 C 0.40 21.34 7.19 71.24 0.51 21.85 16 12 O -0.57 -31.29 14.75 20.79 0.31 -30.99 16 13 O -0.23 -14.74 9.40 16.37 0.15 -14.59 16 14 C -0.42 -27.40 9.65 67.94 0.66 -26.74 16 15 H 0.09 5.50 6.86 -2.91 -0.02 5.48 16 16 C -0.01 -0.48 5.49 84.88 0.47 -0.01 16 17 N -0.90 -57.28 13.67 21.62 0.30 -56.98 16 18 Si 1.02 45.78 29.55 68.60 2.03 47.80 16 19 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 21 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 22 C 0.51 21.38 7.34 87.90 0.64 22.03 16 23 O -0.53 -28.23 14.36 -2.68 -0.04 -28.27 16 24 C -0.15 -3.17 9.06 22.39 0.20 -2.97 16 25 C -0.06 -1.20 5.88 -19.88 -0.12 -1.31 16 26 C -0.11 -1.16 9.60 71.23 0.68 -0.47 16 27 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 29 H 0.09 0.88 5.94 -2.39 -0.01 0.87 16 30 H 0.13 3.33 8.06 -2.91 -0.02 3.30 16 31 H 0.11 5.03 5.27 -2.92 -0.02 5.01 16 32 H 0.12 1.57 7.70 -2.39 -0.02 1.55 16 33 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.14 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.08 2.44 7.04 -2.39 -0.02 2.43 16 36 H 0.28 16.00 8.31 -92.71 -0.77 15.22 16 37 H 0.16 2.21 7.02 -2.91 -0.02 2.19 16 38 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 39 H 0.08 0.67 5.94 -2.38 -0.01 0.66 16 40 H 0.08 0.62 8.08 -2.39 -0.02 0.61 16 Total: -1.00 -91.14 336.60 6.85 -84.30 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 1.07 Total: 17.88 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 5.00 Total: 0.10 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -1.67 Total: -76.24 kcal Atomic # 8 Polarization: -74.26 SS G_CDS: 0.42 Total: -73.84 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -91.14 6.85 -84.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095955554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.798 kcal (2) G-P(sol) polarization free energy of solvation -91.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds