Wall clock time and date at job start Fri Apr 10 2020 17:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30647 * 1 3 3 Si 1.86802 * 120.00085 * 2 1 4 4 H 1.48500 * 109.47072 * 274.96245 * 3 2 1 5 5 H 1.48498 * 109.46962 * 34.96306 * 3 2 1 6 6 H 1.48497 * 109.46925 * 154.96239 * 3 2 1 7 7 C 1.40230 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99601 * 174.09338 * 7 2 1 9 9 C 1.41104 * 120.00190 * 354.09715 * 7 2 1 10 10 C 1.40884 * 120.10233 * 139.43338 * 9 7 2 11 11 C 1.36319 * 119.89066 * 180.02562 * 10 9 7 12 12 C 1.40007 * 120.10698 * 0.02562 * 11 10 9 13 13 C 1.47641 * 119.89614 * 179.97438 * 12 11 10 14 14 O 1.21588 * 120.00283 * 291.54769 * 13 12 11 15 15 N 1.34773 * 120.00230 * 111.54510 * 13 12 11 16 16 C 1.46926 * 120.63146 * 334.37316 * 15 13 12 17 17 C 1.53198 * 108.77605 * 233.58440 * 16 15 13 18 18 C 1.53036 * 109.31156 * 305.36295 * 17 16 15 19 19 C 1.53048 * 109.52797 * 61.36975 * 18 17 16 20 20 C 1.46929 * 120.63225 * 154.34550 * 15 13 12 21 21 H 1.09002 * 109.58908 * 246.34649 * 20 15 13 22 22 C 1.50697 * 109.58705 * 6.62829 * 20 15 13 23 23 O 1.20821 * 120.00100 * 128.63676 * 22 20 15 24 24 O 1.34234 * 119.99736 * 308.64179 * 22 20 15 25 25 C 1.40013 * 120.20970 * 0.24911 * 12 11 10 26 26 C 1.36316 * 120.10700 * 359.48695 * 25 12 11 27 27 H 0.97002 * 119.99700 * 0.02562 * 1 2 3 28 28 H 1.08007 * 120.05583 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.94436 * 180.02562 * 11 10 9 30 30 H 1.08998 * 109.59083 * 113.80014 * 16 15 13 31 31 H 1.08995 * 109.58580 * 353.36848 * 16 15 13 32 32 H 1.08995 * 109.50016 * 185.41331 * 17 16 15 33 33 H 1.08998 * 109.52301 * 65.32794 * 17 16 15 34 34 H 1.09003 * 109.46320 * 181.38083 * 18 17 16 35 35 H 1.08998 * 109.46133 * 301.35695 * 18 17 16 36 36 H 1.09000 * 109.49727 * 58.58224 * 19 18 17 37 37 H 1.08999 * 109.49712 * 178.67566 * 19 18 17 38 38 H 0.96701 * 116.99790 * 180.02562 * 24 22 20 39 39 H 1.08005 * 119.94861 * 179.74803 * 25 12 11 40 40 H 1.08000 * 120.05571 * 180.27281 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.3831 2.1070 -1.3948 5 1 1.4943 2.6201 0.8023 6 1 3.5865 1.4121 0.5925 7 6 2.0076 -1.2145 0.0005 8 1 3.0832 -1.2170 -0.0957 9 6 1.3076 -2.4332 0.1268 10 6 1.6862 -3.5487 -0.6459 11 6 1.0067 -4.7239 -0.5209 12 6 -0.0662 -4.8230 0.3731 13 6 -0.7994 -6.0978 0.5044 14 8 -1.4855 -6.5020 -0.4144 15 7 -0.7080 -6.8137 1.6426 16 6 0.4716 -6.6929 2.5102 17 6 1.0456 -8.0913 2.7594 18 6 -0.0542 -8.9979 3.3166 19 6 -1.1869 -9.1158 2.2940 20 6 -1.7863 -7.7292 2.0398 21 1 -2.2613 -7.3616 2.9494 22 6 -2.8082 -7.8153 0.9357 23 8 -3.1597 -8.8942 0.5206 24 8 -3.3279 -6.6934 0.4132 25 6 -0.4499 -3.7154 1.1389 26 6 0.2270 -2.5377 1.0248 27 1 -0.4850 0.8401 -0.0004 28 1 2.5135 -3.4731 -1.3361 29 1 1.2964 -5.5797 -1.1124 30 1 0.1824 -6.2422 3.4596 31 1 1.2223 -6.0716 2.0219 32 1 1.8624 -8.0265 3.4782 33 1 1.4177 -8.5047 1.8221 34 1 0.3576 -9.9869 3.5179 35 1 -0.4428 -8.5713 4.2413 36 1 -0.7939 -9.5192 1.3608 37 1 -1.9591 -9.7804 2.6815 38 1 -3.9803 -6.7991 -0.2928 39 1 -1.2807 -3.7954 1.8243 40 1 -0.0668 -1.6851 1.6191 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095989367.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:24 Heat of formation + Delta-G solvation = -102.348630 kcal Electronic energy + Delta-G solvation = -25096.887228 eV Core-core repulsion = 21455.233863 eV Total energy + Delta-G solvation = -3641.653365 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.82235 -38.94384 -37.59926 -36.92028 -35.60201 -33.71973 -32.71739 -31.60097 -30.01175 -29.61465 -26.50813 -25.23354 -24.19405 -22.18717 -21.23101 -21.06031 -20.58034 -18.86376 -17.79618 -17.42578 -17.03023 -16.26228 -15.73732 -15.53608 -15.05753 -14.81769 -14.28032 -14.12284 -13.90440 -13.73885 -13.37133 -13.09717 -12.76686 -12.69732 -12.26849 -12.22381 -11.93394 -11.60364 -11.52910 -11.24307 -11.19050 -11.03146 -10.99580 -10.76271 -10.72378 -10.49442 -10.28865 -9.98899 -9.60649 -9.35061 -9.12177 -8.35321 -7.74824 -7.37353 -6.82377 -4.54905 2.31813 2.42034 2.91387 2.97106 3.03120 3.07091 3.15345 3.29471 3.44686 3.87715 4.51294 4.56373 4.73224 4.87763 4.95768 5.09543 5.39231 5.42415 5.49172 5.53979 5.60839 5.75538 5.80681 5.88619 5.98525 6.01982 6.10490 6.15750 6.24873 6.64581 6.75934 6.86834 6.93925 6.98094 7.12632 7.45493 7.48817 7.74589 7.79803 7.91100 8.10480 8.20631 8.45497 8.62565 8.72866 8.78323 10.15597 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.024809 B = 0.003783 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.352034 B = 7398.868965 C = 7949.603528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.076 3.924 3 Si 0.912 3.088 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.471 4.471 8 H 0.081 0.919 9 C 0.132 3.868 10 C -0.214 4.214 11 C -0.055 4.055 12 C -0.249 4.249 13 C 0.589 3.411 14 O -0.518 6.518 15 N -0.625 5.625 16 C 0.122 3.878 17 C -0.138 4.138 18 C -0.117 4.117 19 C -0.117 4.117 20 C 0.155 3.845 21 H 0.103 0.897 22 C 0.500 3.500 23 O -0.530 6.530 24 O -0.490 6.490 25 C -0.063 4.063 26 C -0.153 4.153 27 H 0.282 0.718 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.403 0.597 39 H 0.091 0.909 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.395 -10.329 8.115 13.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.501 4.501 8 H 0.099 0.901 9 C 0.129 3.871 10 C -0.233 4.233 11 C -0.074 4.074 12 C -0.253 4.253 13 C 0.381 3.619 14 O -0.394 6.394 15 N -0.364 5.364 16 C -0.001 4.001 17 C -0.177 4.177 18 C -0.154 4.154 19 C -0.155 4.155 20 C 0.051 3.949 21 H 0.120 0.880 22 C 0.344 3.656 23 O -0.420 6.420 24 O -0.300 6.300 25 C -0.082 4.082 26 C -0.173 4.173 27 H 0.093 0.907 28 H 0.118 0.882 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.261 0.739 39 H 0.110 0.890 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.789 -10.597 7.786 13.174 hybrid contribution -0.228 0.797 -0.519 0.978 sum -1.017 -9.800 7.267 12.243 Atomic orbital electron populations 1.69683 1.07496 1.29431 1.35973 1.25908 0.94846 1.01141 0.92306 0.86231 0.80447 0.80551 0.79088 1.19545 1.20091 1.18470 1.19595 0.95156 0.90155 1.45189 0.90132 1.17727 0.90377 0.91872 0.87079 1.20853 1.04274 0.94548 1.03651 1.20235 0.94501 0.96893 0.95803 1.18802 1.04647 0.92634 1.09206 1.18856 0.79626 0.83378 0.80005 1.90627 1.40640 1.70070 1.38044 1.48081 1.19669 1.43686 1.24953 1.21610 0.87141 0.96778 0.94523 1.21986 0.98107 0.95724 1.01853 1.21523 0.95617 1.00253 0.98055 1.21801 0.98647 0.94147 1.00930 1.20847 0.86557 0.92738 0.94794 0.87967 1.22656 0.79943 0.81792 0.81241 1.90656 1.60642 1.30108 1.60554 1.84706 1.56493 1.36406 1.52349 1.20310 0.97727 0.92900 0.97225 1.20929 0.99690 0.95869 1.00780 0.90714 0.88245 0.89070 0.91623 0.88382 0.90416 0.91405 0.91209 0.91496 0.90597 0.90190 0.73896 0.89040 0.86975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.13 11.43 55.56 0.64 -19.49 16 2 C 0.08 1.82 5.29 -17.31 -0.09 1.73 16 3 Si 0.91 17.96 29.57 -169.99 -5.03 12.93 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 7 C -0.47 -11.77 8.99 -37.75 -0.34 -12.11 16 8 H 0.08 1.92 7.86 -52.49 -0.41 1.51 16 9 C 0.13 3.29 5.41 -106.81 -0.58 2.71 16 10 C -0.21 -4.94 9.73 -39.27 -0.38 -5.32 16 11 C -0.06 -1.20 9.71 -39.61 -0.38 -1.58 16 12 C -0.25 -5.29 4.02 -104.73 -0.42 -5.72 16 13 C 0.59 11.60 6.20 -12.42 -0.08 11.52 16 14 O -0.52 -11.43 12.63 -20.29 -0.26 -11.68 16 15 N -0.62 -9.73 2.97 -167.71 -0.50 -10.23 16 16 C 0.12 1.55 6.20 -3.71 -0.02 1.52 16 17 C -0.14 -1.39 6.08 -26.61 -0.16 -1.55 16 18 C -0.12 -1.05 5.88 -26.69 -0.16 -1.21 16 19 C -0.12 -1.35 4.67 -26.61 -0.12 -1.48 16 20 C 0.16 2.15 3.41 -68.75 -0.23 1.91 16 21 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 22 C 0.50 8.32 6.16 36.00 0.22 8.54 16 23 O -0.53 -9.71 16.80 -18.75 -0.31 -10.03 16 24 O -0.49 -8.21 9.83 -47.74 -0.47 -8.68 16 25 C -0.06 -1.37 9.71 -39.61 -0.38 -1.75 16 26 C -0.15 -3.69 8.55 -39.27 -0.34 -4.02 16 27 H 0.28 6.49 8.29 -40.82 -0.34 6.15 16 28 H 0.10 2.16 8.06 -52.48 -0.42 1.73 16 29 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.10 1.40 6.86 -51.93 -0.36 1.05 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.40 5.36 9.10 45.56 0.41 5.78 16 39 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 40 H 0.11 2.78 6.97 -52.49 -0.37 2.42 16 LS Contribution 332.89 15.07 5.02 5.02 Total: -1.00 -30.24 332.89 -8.89 -39.13 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -4.50 Total: 9.85 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -3.47 Total: -6.81 kcal Atomic # 7 Polarization: -29.86 SS G_CDS: 0.14 Total: -29.72 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -1.04 Total: -30.39 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.24 -8.89 -39.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095989367.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.222 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds