Wall clock time and date at job start Fri Apr 10 2020 17:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30647 * 1 3 3 Si 1.86802 * 120.00085 * 2 1 4 4 H 1.48500 * 109.47072 * 274.96245 * 3 2 1 5 5 H 1.48498 * 109.46962 * 34.96306 * 3 2 1 6 6 H 1.48497 * 109.46925 * 154.96239 * 3 2 1 7 7 C 1.40230 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99601 * 174.09338 * 7 2 1 9 9 C 1.41104 * 120.00190 * 354.09715 * 7 2 1 10 10 C 1.40884 * 120.10233 * 139.43338 * 9 7 2 11 11 C 1.36319 * 119.89066 * 180.02562 * 10 9 7 12 12 C 1.40007 * 120.10698 * 0.02562 * 11 10 9 13 13 C 1.47641 * 119.89614 * 179.97438 * 12 11 10 14 14 O 1.21588 * 120.00283 * 291.54769 * 13 12 11 15 15 N 1.34773 * 120.00230 * 111.54510 * 13 12 11 16 16 C 1.46926 * 120.63146 * 334.37316 * 15 13 12 17 17 C 1.53198 * 108.77605 * 233.58440 * 16 15 13 18 18 C 1.53036 * 109.31156 * 305.36295 * 17 16 15 19 19 C 1.53048 * 109.52797 * 61.36975 * 18 17 16 20 20 C 1.46929 * 120.63225 * 154.34550 * 15 13 12 21 21 H 1.09002 * 109.58908 * 246.34649 * 20 15 13 22 22 C 1.50697 * 109.58705 * 6.62829 * 20 15 13 23 23 O 1.20821 * 120.00100 * 128.63676 * 22 20 15 24 24 O 1.34234 * 119.99736 * 308.64179 * 22 20 15 25 25 C 1.40013 * 120.20970 * 0.24911 * 12 11 10 26 26 C 1.36316 * 120.10700 * 359.48695 * 25 12 11 27 27 H 0.97002 * 119.99700 * 0.02562 * 1 2 3 28 28 H 1.08007 * 120.05583 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.94436 * 180.02562 * 11 10 9 30 30 H 1.08998 * 109.59083 * 113.80014 * 16 15 13 31 31 H 1.08995 * 109.58580 * 353.36848 * 16 15 13 32 32 H 1.08995 * 109.50016 * 185.41331 * 17 16 15 33 33 H 1.08998 * 109.52301 * 65.32794 * 17 16 15 34 34 H 1.09003 * 109.46320 * 181.38083 * 18 17 16 35 35 H 1.08998 * 109.46133 * 301.35695 * 18 17 16 36 36 H 1.09000 * 109.49727 * 58.58224 * 19 18 17 37 37 H 1.08999 * 109.49712 * 178.67566 * 19 18 17 38 38 H 0.96701 * 116.99790 * 180.02562 * 24 22 20 39 39 H 1.08005 * 119.94861 * 179.74803 * 25 12 11 40 40 H 1.08000 * 120.05571 * 180.27281 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.3831 2.1070 -1.3948 5 1 1.4943 2.6201 0.8023 6 1 3.5865 1.4121 0.5925 7 6 2.0076 -1.2145 0.0005 8 1 3.0832 -1.2170 -0.0957 9 6 1.3076 -2.4332 0.1268 10 6 1.6862 -3.5487 -0.6459 11 6 1.0067 -4.7239 -0.5209 12 6 -0.0662 -4.8230 0.3731 13 6 -0.7994 -6.0978 0.5044 14 8 -1.4855 -6.5020 -0.4144 15 7 -0.7080 -6.8137 1.6426 16 6 0.4716 -6.6929 2.5102 17 6 1.0456 -8.0913 2.7594 18 6 -0.0542 -8.9979 3.3166 19 6 -1.1869 -9.1158 2.2940 20 6 -1.7863 -7.7292 2.0398 21 1 -2.2613 -7.3616 2.9494 22 6 -2.8082 -7.8153 0.9357 23 8 -3.1597 -8.8942 0.5206 24 8 -3.3279 -6.6934 0.4132 25 6 -0.4499 -3.7154 1.1389 26 6 0.2270 -2.5377 1.0248 27 1 -0.4850 0.8401 -0.0004 28 1 2.5135 -3.4731 -1.3361 29 1 1.2964 -5.5797 -1.1124 30 1 0.1824 -6.2422 3.4596 31 1 1.2223 -6.0716 2.0219 32 1 1.8624 -8.0265 3.4782 33 1 1.4177 -8.5047 1.8221 34 1 0.3576 -9.9869 3.5179 35 1 -0.4428 -8.5713 4.2413 36 1 -0.7939 -9.5192 1.3608 37 1 -1.9591 -9.7804 2.6815 38 1 -3.9803 -6.7991 -0.2928 39 1 -1.2807 -3.7954 1.8243 40 1 -0.0668 -1.6851 1.6191 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095989367.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:23 Heat of formation + Delta-G solvation = -119.121930 kcal Electronic energy + Delta-G solvation = -25097.614573 eV Core-core repulsion = 21455.233863 eV Total energy + Delta-G solvation = -3642.380710 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.12325 -40.39748 -39.09116 -38.35142 -36.93093 -35.50414 -33.87898 -32.70227 -31.71228 -31.40454 -28.01631 -26.64240 -25.24407 -23.75068 -22.86186 -22.41209 -21.79665 -20.18512 -19.25737 -19.10797 -18.40656 -17.54738 -17.24408 -16.94102 -16.62416 -16.03187 -15.76346 -15.41670 -15.16051 -15.03193 -14.55524 -14.44254 -14.26592 -13.99515 -13.88888 -13.67708 -13.58474 -13.31379 -12.83619 -12.66044 -12.50968 -12.35532 -12.26499 -11.99996 -11.73584 -11.67168 -11.56308 -11.53079 -11.40568 -11.10368 -10.71199 -9.60099 -9.55553 -9.19850 -8.61511 -6.43795 0.64895 1.08077 1.09408 1.42145 1.43489 1.55650 1.64218 2.01194 2.22168 2.23934 2.74933 3.51185 3.58304 3.84513 3.98983 4.05329 4.10231 4.18406 4.35308 4.38067 4.39485 4.51866 4.74511 4.84555 4.91591 4.95450 5.07511 5.10347 5.13835 5.15995 5.22181 5.31370 5.44533 5.51359 5.64489 5.66369 5.74710 5.96240 6.06135 6.27920 6.33700 6.60564 6.89186 6.93106 6.97265 7.12879 8.38742 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.024809 B = 0.003783 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.352034 B = 7398.868965 C = 7949.603528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.036 3.964 3 Si 0.984 3.016 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.255 1.255 7 C -0.503 4.503 8 H 0.082 0.918 9 C 0.105 3.895 10 C -0.222 4.222 11 C -0.059 4.059 12 C -0.239 4.239 13 C 0.587 3.413 14 O -0.549 6.549 15 N -0.617 5.617 16 C 0.114 3.886 17 C -0.133 4.133 18 C -0.109 4.109 19 C -0.112 4.112 20 C 0.151 3.849 21 H 0.136 0.864 22 C 0.494 3.506 23 O -0.553 6.553 24 O -0.501 6.501 25 C -0.059 4.059 26 C -0.166 4.166 27 H 0.287 0.713 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.049 0.951 37 H 0.094 0.906 38 H 0.412 0.588 39 H 0.109 0.891 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.079 -11.143 9.971 14.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.178 4.178 3 Si 0.805 3.195 4 H -0.193 1.193 5 H -0.193 1.193 6 H -0.178 1.178 7 C -0.534 4.534 8 H 0.100 0.900 9 C 0.102 3.898 10 C -0.241 4.241 11 C -0.078 4.078 12 C -0.243 4.243 13 C 0.378 3.622 14 O -0.428 6.428 15 N -0.354 5.354 16 C -0.007 4.007 17 C -0.171 4.171 18 C -0.147 4.147 19 C -0.150 4.150 20 C 0.047 3.953 21 H 0.154 0.846 22 C 0.339 3.661 23 O -0.445 6.445 24 O -0.312 6.312 25 C -0.078 4.078 26 C -0.186 4.186 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.123 0.877 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.272 0.728 39 H 0.127 0.873 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.302 -11.437 9.678 14.986 hybrid contribution -0.443 0.898 -1.094 1.483 sum -0.745 -10.539 8.584 13.613 Atomic orbital electron populations 1.69749 1.08963 1.30594 1.37115 1.26734 0.95542 1.04271 0.91286 0.85154 0.79195 0.76041 0.79091 1.19282 1.19314 1.17839 1.19848 0.95436 0.91101 1.46970 0.90014 1.18028 0.91214 0.92659 0.87871 1.21004 1.04748 0.94659 1.03721 1.20432 0.94490 0.96943 0.95963 1.19049 1.03795 0.93581 1.07867 1.18568 0.79228 0.83292 0.81100 1.90624 1.42048 1.70652 1.39470 1.48017 1.20728 1.42783 1.23894 1.21878 0.85651 0.98649 0.94500 1.21968 0.99190 0.93868 1.02035 1.21534 0.94080 1.01284 0.97752 1.21821 0.99890 0.92614 1.00710 1.21260 0.85424 0.93861 0.94724 0.84640 1.23276 0.80036 0.81296 0.81513 1.90637 1.61590 1.30799 1.61456 1.84685 1.56895 1.36815 1.52786 1.20426 0.97714 0.92280 0.97363 1.20865 1.00365 0.96206 1.01151 0.90201 0.87503 0.87596 0.89334 0.90426 0.87712 0.92925 0.89179 0.89220 0.93169 0.88751 0.72767 0.87335 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.01 11.43 21.87 0.25 -42.76 16 2 C 0.04 1.73 5.29 85.35 0.45 2.18 16 3 Si 0.98 36.92 29.57 68.60 2.03 38.95 16 4 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.27 -9.65 7.11 99.48 0.71 -8.95 16 6 H -0.25 -9.20 7.11 99.48 0.71 -8.50 16 7 C -0.50 -25.76 8.99 23.46 0.21 -25.55 16 8 H 0.08 3.99 7.86 -2.91 -0.02 3.97 16 9 C 0.10 5.34 5.41 -21.28 -0.12 5.22 16 10 C -0.22 -10.41 9.73 22.47 0.22 -10.19 16 11 C -0.06 -2.58 9.71 22.25 0.22 -2.37 16 12 C -0.24 -10.10 4.02 -19.94 -0.08 -10.18 16 13 C 0.59 22.68 6.20 86.73 0.54 23.21 16 14 O -0.55 -24.15 12.63 20.46 0.26 -23.89 16 15 N -0.62 -18.07 2.97 -802.78 -2.39 -20.46 16 16 C 0.11 2.62 6.20 86.36 0.54 3.16 16 17 C -0.13 -2.23 6.08 30.67 0.19 -2.05 16 18 C -0.11 -1.51 5.88 30.62 0.18 -1.33 16 19 C -0.11 -2.29 4.67 30.67 0.14 -2.15 16 20 C 0.15 3.81 3.41 44.23 0.15 3.96 16 21 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 22 C 0.49 15.95 6.16 71.23 0.44 16.39 16 23 O -0.55 -20.00 16.80 21.98 0.37 -19.63 16 24 O -0.50 -16.56 9.83 -43.36 -0.43 -16.99 16 25 C -0.06 -2.58 9.71 22.25 0.22 -2.36 16 26 C -0.17 -8.18 8.55 22.47 0.19 -7.99 16 27 H 0.29 13.45 8.29 -92.71 -0.77 12.68 16 28 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 29 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 2.12 6.86 -2.39 -0.02 2.11 16 32 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.05 1.29 8.08 -2.39 -0.02 1.27 16 37 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 38 H 0.41 11.06 9.10 -74.06 -0.67 10.39 16 39 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 40 H 0.10 5.01 6.97 -2.91 -0.02 4.99 16 Total: -1.00 -66.80 332.89 3.97 -62.83 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: 0.39 Total: 31.98 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 3.48 Total: -10.03 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: -2.14 Total: -63.22 kcal Atomic # 8 Polarization: -60.71 SS G_CDS: 0.20 Total: -60.51 kcal Atomic # 14 Polarization: 36.92 SS G_CDS: 2.03 Total: 38.95 kcal Total: -66.80 3.97 -62.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095989367.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.294 kcal (2) G-P(sol) polarization free energy of solvation -66.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds