Wall clock time and date at job start Fri Apr 10 2020 17:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86802 * 120.00008 * 2 1 4 4 H 1.48502 * 109.47363 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47003 * 300.00348 * 3 2 1 6 6 H 1.48497 * 109.47385 * 60.00208 * 3 2 1 7 7 C 1.40230 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99894 * 197.87659 * 7 2 1 9 9 C 1.41105 * 120.00193 * 17.87241 * 7 2 1 10 10 C 1.40888 * 120.10299 * 204.63280 * 9 7 2 11 11 C 1.36313 * 119.88606 * 180.02562 * 10 9 7 12 12 C 1.40014 * 120.11532 * 0.02562 * 11 10 9 13 13 C 1.47638 * 119.89950 * 179.97438 * 12 11 10 14 14 O 1.21586 * 120.00148 * 0.02562 * 13 12 11 15 15 N 1.34785 * 119.99752 * 180.27106 * 13 12 11 16 16 C 1.46497 * 119.99417 * 179.72414 * 15 13 12 17 17 H 1.09001 * 109.47252 * 35.00613 * 16 15 13 18 18 C 1.53008 * 109.46642 * 155.00450 * 16 15 13 19 19 C 1.50704 * 109.46989 * 295.00117 * 18 16 15 20 20 O 1.20829 * 120.00050 * 359.97438 * 19 18 16 21 21 O 1.34232 * 120.00055 * 180.02562 * 19 18 16 22 22 C 1.52997 * 109.47598 * 275.00114 * 16 15 13 23 23 C 1.53000 * 117.49961 * 128.74956 * 22 16 15 24 24 C 1.53000 * 117.49680 * 60.09108 * 22 16 15 25 25 C 1.40016 * 120.20058 * 0.25173 * 12 11 10 26 26 C 1.36319 * 120.11088 * 359.48456 * 25 12 11 27 27 H 0.96993 * 120.00291 * 359.97438 * 1 2 3 28 28 H 1.07990 * 120.05477 * 359.97438 * 10 9 7 29 29 H 1.08005 * 119.94401 * 179.97438 * 11 10 9 30 30 H 0.96998 * 120.00180 * 359.73305 * 15 13 12 31 31 H 1.08999 * 109.47097 * 54.99727 * 18 16 15 32 32 H 1.08994 * 109.47216 * 175.00363 * 18 16 15 33 33 H 0.96700 * 117.00155 * 179.97438 * 21 19 18 34 34 H 1.09001 * 115.54993 * 274.42400 * 22 16 15 35 35 H 1.09002 * 117.49692 * 0.02562 * 23 22 16 36 36 H 1.08995 * 117.49687 * 145.02434 * 23 22 16 37 37 H 1.09005 * 117.49953 * 214.98472 * 24 22 16 38 38 H 1.09003 * 117.50181 * 359.97438 * 24 22 16 39 39 H 1.08004 * 119.94056 * 179.74384 * 25 12 11 40 40 H 1.07994 * 120.05462 * 180.25544 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.7005 1.3465 -0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8818 2.3965 1.2125 7 6 2.0076 -1.2144 -0.0005 8 1 3.0485 -1.2371 0.2866 9 6 1.3532 -2.4068 -0.3761 10 6 1.8269 -3.6495 0.0891 11 6 1.1916 -4.7987 -0.2769 12 6 0.0706 -4.7457 -1.1141 13 6 -0.6134 -5.9933 -1.5079 14 8 -0.2034 -7.0647 -1.1051 15 7 -1.6895 -5.9450 -2.3182 16 6 -2.3645 -7.1835 -2.7138 17 1 -2.3324 -7.8946 -1.8883 18 6 -3.8215 -6.8793 -3.0685 19 6 -4.5495 -6.4041 -1.8375 20 8 -3.9633 -6.3181 -0.7844 21 8 -5.8494 -6.0773 -1.9107 22 6 -1.6579 -7.7832 -3.9312 23 6 -1.2492 -9.2557 -3.8565 24 6 -0.1831 -8.1601 -3.7772 25 6 -0.4003 -3.5134 -1.5835 26 6 0.2251 -2.3584 -1.2186 27 1 -0.4850 0.8400 0.0004 28 1 2.6922 -3.6915 0.7338 29 1 1.5542 -5.7518 0.0788 30 1 -2.0168 -5.0903 -2.6393 31 1 -3.8549 -6.1028 -3.8327 32 1 -4.2995 -7.7826 -3.4472 33 1 -6.2735 -5.7782 -1.0947 34 1 -1.9808 -7.3989 -4.8987 35 1 -1.4841 -9.7973 -2.9402 36 1 -1.3028 -9.8400 -4.7750 37 1 0.4643 -8.0242 -4.6436 38 1 0.2839 -7.9805 -2.8087 39 1 -1.2629 -3.4778 -2.2324 40 1 -0.1413 -1.4082 -1.5779 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095989458.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:30 Heat of formation + Delta-G solvation = -92.977187 kcal Electronic energy + Delta-G solvation = -24301.052483 eV Core-core repulsion = 20659.805494 eV Total energy + Delta-G solvation = -3641.246989 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.47662 -39.25585 -37.62069 -36.54049 -36.13791 -34.05101 -33.82084 -31.26993 -29.80271 -29.39413 -26.21522 -25.01008 -22.26964 -21.98157 -21.40609 -20.95636 -20.16469 -19.64853 -18.04232 -17.49702 -16.81640 -16.46132 -16.30215 -15.71305 -15.37739 -14.95290 -14.53177 -14.02990 -13.83778 -13.30233 -13.17983 -13.00638 -12.77238 -12.57654 -12.13052 -11.99025 -11.81489 -11.53778 -11.47119 -11.42110 -11.26605 -11.13257 -10.91220 -10.61995 -10.57847 -10.22783 -10.08669 -9.99393 -9.53569 -9.32387 -8.87402 -8.47844 -7.68335 -7.50313 -7.00858 -4.57145 2.19816 2.27655 2.91166 2.92386 2.96216 3.01951 3.07033 3.58056 3.75910 3.90209 4.14993 4.48940 4.58612 4.88096 4.96927 5.12467 5.18889 5.26191 5.37154 5.49730 5.61231 5.75353 5.86168 6.04853 6.07061 6.15549 6.27600 6.35615 6.46299 6.62583 6.79788 6.85568 6.99295 7.09883 7.16908 7.46825 7.68811 7.82820 7.85994 7.89335 8.10367 8.29335 8.43122 8.66340 8.78737 9.16359 9.91284 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.017650 B = 0.003679 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.060002 B = 7609.493902 C = 8592.724722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.444 4.444 8 H 0.085 0.915 9 C 0.129 3.871 10 C -0.239 4.239 11 C -0.022 4.022 12 C -0.280 4.280 13 C 0.583 3.417 14 O -0.572 6.572 15 N -0.728 5.728 16 C 0.189 3.811 17 H 0.095 0.905 18 C -0.118 4.118 19 C 0.468 3.532 20 O -0.490 6.490 21 O -0.524 6.524 22 C -0.172 4.172 23 C -0.175 4.175 24 C -0.175 4.175 25 C -0.062 4.062 26 C -0.179 4.179 27 H 0.285 0.715 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.393 0.607 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.410 0.590 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.125 0.875 39 H 0.086 0.914 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.778 -7.629 -8.443 14.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.472 4.472 8 H 0.103 0.897 9 C 0.125 3.875 10 C -0.258 4.258 11 C -0.041 4.041 12 C -0.284 4.284 13 C 0.379 3.621 14 O -0.455 6.455 15 N -0.379 5.379 16 C 0.084 3.916 17 H 0.113 0.887 18 C -0.156 4.156 19 C 0.309 3.691 20 O -0.375 6.375 21 O -0.337 6.337 22 C -0.192 4.192 23 C -0.213 4.213 24 C -0.211 4.211 25 C -0.081 4.081 26 C -0.198 4.198 27 H 0.096 0.904 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.228 0.772 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.268 0.732 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.143 0.857 39 H 0.104 0.896 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.349 -8.328 -8.194 14.360 hybrid contribution -0.353 1.503 0.328 1.579 sum -8.703 -6.825 -7.865 13.572 Atomic orbital electron populations 1.69755 1.07917 1.29862 1.32086 1.26090 0.94780 1.01845 0.91910 0.86188 0.81137 0.80285 0.78819 1.18063 1.19420 1.19702 1.19867 0.98432 0.91212 1.37699 0.89727 1.17778 0.90360 0.92174 0.87157 1.20711 1.04607 0.92672 1.07840 1.20358 0.92969 0.97127 0.93695 1.18906 1.04279 0.91136 1.14109 1.18411 0.78375 0.89472 0.75883 1.90543 1.66494 1.31558 1.56867 1.45806 1.32161 1.07856 1.52109 1.20132 0.87177 0.88588 0.95730 0.88730 1.21677 0.94903 1.04545 0.94483 1.23438 0.80000 0.74525 0.91187 1.90857 1.67236 1.48085 1.31348 1.84505 1.26058 1.78862 1.44231 1.22615 0.99625 0.98043 0.98880 1.22932 1.04970 0.90684 1.02679 1.23327 0.90970 1.01596 1.05239 1.20451 0.97187 0.92670 0.97775 1.20959 0.99992 0.96846 1.01994 0.90359 0.88447 0.88123 0.77197 0.87220 0.86386 0.73176 0.87926 0.88832 0.89220 0.89601 0.85680 0.89599 0.86295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.79 10.96 55.56 0.61 -18.18 16 2 C 0.07 1.76 5.14 -17.31 -0.09 1.67 16 3 Si 0.91 17.44 29.60 -169.99 -5.03 12.41 16 4 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 5 H -0.27 -5.05 7.11 56.52 0.40 -4.64 16 6 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.44 -11.21 9.04 -37.75 -0.34 -11.55 16 8 H 0.08 2.04 7.91 -52.48 -0.42 1.63 16 9 C 0.13 3.32 5.57 -106.81 -0.60 2.73 16 10 C -0.24 -5.89 9.73 -39.27 -0.38 -6.27 16 11 C -0.02 -0.54 9.52 -39.61 -0.38 -0.91 16 12 C -0.28 -6.51 5.89 -104.73 -0.62 -7.13 16 13 C 0.58 12.41 7.10 -12.42 -0.09 12.32 16 14 O -0.57 -13.25 13.35 5.29 0.07 -13.18 16 15 N -0.73 -12.19 4.15 -54.81 -0.23 -12.42 16 16 C 0.19 2.58 1.83 -67.93 -0.12 2.46 16 17 H 0.09 1.55 7.15 -51.93 -0.37 1.18 16 18 C -0.12 -1.16 5.34 -27.88 -0.15 -1.30 16 19 C 0.47 5.74 8.19 36.01 0.29 6.03 16 20 O -0.49 -8.38 16.11 -18.75 -0.30 -8.69 16 21 O -0.52 -4.93 13.42 -39.26 -0.53 -5.46 16 22 C -0.17 -2.08 5.36 -90.62 -0.49 -2.57 16 23 C -0.18 -2.02 10.18 -26.69 -0.27 -2.29 16 24 C -0.17 -2.50 9.74 -26.69 -0.26 -2.76 16 25 C -0.06 -1.40 9.47 -39.61 -0.38 -1.77 16 26 C -0.18 -4.45 8.64 -39.27 -0.34 -4.79 16 27 H 0.29 6.21 8.29 -40.82 -0.34 5.88 16 28 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 29 H 0.10 2.33 7.63 -52.48 -0.40 1.93 16 30 H 0.39 6.05 6.60 -40.82 -0.27 5.78 16 31 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.12 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.41 2.47 9.10 45.56 0.41 2.88 16 34 H 0.10 1.03 8.11 -51.93 -0.42 0.61 16 35 H 0.09 1.12 8.05 -51.93 -0.42 0.70 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.13 2.27 5.02 -51.93 -0.26 2.01 16 39 H 0.09 1.66 6.37 -52.48 -0.33 1.33 16 40 H 0.12 3.00 6.16 -52.49 -0.32 2.67 16 LS Contribution 340.66 15.07 5.13 5.13 Total: -1.00 -31.46 340.66 -8.52 -39.98 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -4.05 Total: 16.53 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -4.20 Total: -16.14 kcal Atomic # 7 Polarization: -30.98 SS G_CDS: 0.38 Total: -30.60 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.76 Total: -27.32 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.46 -8.52 -39.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095989458.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.997 kcal (2) G-P(sol) polarization free energy of solvation -31.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds