Wall clock time and date at job start Fri Apr 10 2020 17:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86801 * 120.00113 * 2 1 4 4 H 1.48498 * 109.47059 * 269.99656 * 3 2 1 5 5 H 1.48495 * 109.46824 * 29.99819 * 3 2 1 6 6 H 1.48505 * 109.46843 * 149.99784 * 3 2 1 7 7 C 1.40229 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99587 * 197.73174 * 7 2 1 9 9 C 1.41107 * 120.00101 * 17.72871 * 7 2 1 10 10 C 1.40883 * 120.10176 * 24.81140 * 9 7 2 11 11 C 1.36320 * 119.89093 * 180.22954 * 10 9 7 12 12 C 1.40019 * 120.10443 * 359.49674 * 11 10 9 13 13 C 1.47644 * 119.89372 * 180.27875 * 12 11 10 14 14 O 1.21585 * 120.00070 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00056 * 179.97438 * 13 12 11 16 16 C 1.46491 * 120.00301 * 179.97438 * 15 13 12 17 17 H 1.09003 * 109.47014 * 325.00070 * 16 15 13 18 18 C 1.53003 * 109.47294 * 204.99837 * 16 15 13 19 19 C 1.50704 * 109.47010 * 65.00196 * 18 16 15 20 20 O 1.20824 * 119.99846 * 359.97438 * 19 18 16 21 21 O 1.34230 * 120.00142 * 180.02562 * 19 18 16 22 22 C 1.52995 * 109.47220 * 84.99726 * 16 15 13 23 23 C 1.52999 * 117.50058 * 8.74954 * 22 16 15 24 24 C 1.52998 * 117.50229 * 300.08900 * 22 16 15 25 25 C 1.40009 * 120.20636 * 0.25449 * 12 11 10 26 26 C 1.36308 * 120.11076 * 0.02562 * 25 12 11 27 27 H 0.97002 * 119.99718 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.06120 * 359.97438 * 10 9 7 29 29 H 1.08002 * 119.94809 * 179.77072 * 11 10 9 30 30 H 0.97003 * 119.99297 * 359.97438 * 15 13 12 31 31 H 1.08999 * 109.46929 * 184.99875 * 18 16 15 32 32 H 1.08997 * 109.47230 * 305.00360 * 18 16 15 33 33 H 0.96691 * 116.99971 * 179.97438 * 21 19 18 34 34 H 1.09002 * 115.54957 * 154.41796 * 22 16 15 35 35 H 1.09005 * 117.49853 * 359.97438 * 23 22 16 36 36 H 1.09002 * 117.50167 * 145.01456 * 23 22 16 37 37 H 1.08994 * 117.50416 * 214.97992 * 24 22 16 38 38 H 1.09000 * 117.49679 * 0.02562 * 24 22 16 39 39 H 1.08006 * 119.94089 * 180.02562 * 25 12 11 40 40 H 1.08004 * 120.05591 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4881 2.0463 -1.4001 5 1 1.4379 2.6526 0.7000 6 1 3.5380 1.4401 0.7001 7 6 2.0075 -1.2144 -0.0005 8 1 3.0491 -1.2368 0.2843 9 6 1.3522 -2.4073 -0.3732 10 6 0.2237 -2.3601 -1.2151 11 6 -0.4089 -3.5147 -1.5686 12 6 0.0676 -4.7469 -1.1049 13 6 -0.6174 -5.9951 -1.4957 14 8 -1.5940 -5.9519 -2.2187 15 7 -0.1603 -7.1824 -1.0510 16 6 -0.8403 -8.4208 -1.4382 17 1 -1.9127 -8.2393 -1.5100 18 6 -0.5748 -9.4990 -0.3857 19 6 -1.2039 -9.0907 0.9215 20 8 -1.8028 -8.0445 1.0029 21 8 -1.0982 -9.8889 1.9955 22 6 -0.3107 -8.8907 -2.7945 23 6 0.9046 -8.1608 -3.3699 24 6 -0.4802 -7.9451 -3.9853 25 6 1.1920 -4.7992 -0.2722 26 6 1.8277 -3.6495 0.0912 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1423 -1.4105 -1.5766 29 1 -1.2764 -3.4793 -2.2110 30 1 0.6191 -7.2168 -0.4745 31 1 -1.0057 -10.4439 -0.7168 32 1 0.5002 -9.6176 -0.2501 33 1 -1.5178 -9.5844 2.8117 34 1 -0.3923 -9.9607 -2.9859 35 1 1.3267 -7.3455 -2.7823 36 1 1.6225 -8.7505 -3.9401 37 1 -0.6729 -8.3929 -4.9602 38 1 -0.9686 -6.9880 -3.8024 39 1 1.5562 -5.7520 0.0826 40 1 2.6952 -3.6909 0.7333 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095989459.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:34 Heat of formation + Delta-G solvation = -88.508320 kcal Electronic energy + Delta-G solvation = -24422.604767 eV Core-core repulsion = 20781.551563 eV Total energy + Delta-G solvation = -3641.053204 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.54001 -39.40720 -37.61062 -36.45364 -36.14375 -33.92663 -33.74018 -31.32117 -29.95755 -29.32113 -26.22255 -25.11959 -22.21983 -22.10110 -21.41006 -20.99884 -19.90057 -19.53869 -18.06650 -17.50130 -16.89767 -16.51463 -16.28048 -15.79328 -15.39544 -15.23301 -14.26788 -13.98155 -13.74695 -13.38037 -13.17114 -12.87850 -12.72901 -12.56225 -12.22207 -12.02122 -11.87632 -11.62489 -11.53071 -11.38301 -11.23193 -11.16270 -10.92402 -10.61458 -10.58702 -10.17781 -10.02027 -9.83548 -9.51055 -9.31354 -8.90426 -8.50194 -7.66611 -7.53372 -6.98906 -4.57323 2.17922 2.27639 2.89625 2.93700 2.97732 3.00146 3.06333 3.66768 3.76572 3.91261 4.05043 4.48785 4.59509 4.91051 4.97465 5.16218 5.18974 5.24835 5.44899 5.52569 5.61411 5.83243 5.90047 5.99134 6.07174 6.18094 6.31985 6.35284 6.44583 6.64902 6.83363 6.86603 6.99807 7.09538 7.13871 7.46664 7.64893 7.81070 7.84155 7.90744 8.08387 8.27725 8.46298 8.66094 8.78760 9.14193 9.93109 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.020035 B = 0.003544 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.231481 B = 7899.855439 C = 8580.904672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.445 4.445 8 H 0.084 0.916 9 C 0.129 3.871 10 C -0.182 4.182 11 C -0.035 4.035 12 C -0.280 4.280 13 C 0.581 3.419 14 O -0.566 6.566 15 N -0.730 5.730 16 C 0.189 3.811 17 H 0.097 0.903 18 C -0.117 4.117 19 C 0.467 3.533 20 O -0.490 6.490 21 O -0.524 6.524 22 C -0.175 4.175 23 C -0.175 4.175 24 C -0.180 4.180 25 C -0.049 4.049 26 C -0.235 4.235 27 H 0.287 0.713 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.393 0.607 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.409 0.591 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.124 0.876 39 H 0.086 0.914 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.590 -15.179 -0.166 15.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.473 4.473 8 H 0.102 0.898 9 C 0.125 3.875 10 C -0.202 4.202 11 C -0.055 4.055 12 C -0.284 4.284 13 C 0.376 3.624 14 O -0.448 6.448 15 N -0.382 5.382 16 C 0.083 3.917 17 H 0.115 0.885 18 C -0.155 4.155 19 C 0.308 3.692 20 O -0.375 6.375 21 O -0.337 6.337 22 C -0.194 4.194 23 C -0.212 4.212 24 C -0.216 4.216 25 C -0.068 4.068 26 C -0.255 4.255 27 H 0.098 0.902 28 H 0.138 0.862 29 H 0.118 0.882 30 H 0.228 0.772 31 H 0.135 0.865 32 H 0.128 0.872 33 H 0.268 0.732 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.142 0.858 39 H 0.104 0.896 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.687 -14.820 -0.994 14.869 hybrid contribution 0.457 0.779 1.007 1.353 sum 1.144 -14.041 0.014 14.087 Atomic orbital electron populations 1.69755 1.07912 1.30074 1.31523 1.26099 0.94790 1.01860 0.91993 0.86216 0.80503 0.79924 0.79644 1.18923 1.20029 1.18338 1.19832 0.98307 0.91251 1.37887 0.89798 1.17771 0.90493 0.92071 0.87133 1.21010 0.99972 0.97016 1.02163 1.20480 0.97015 0.91556 0.96434 1.18909 1.03587 0.91889 1.14063 1.18448 0.82606 0.83138 0.78199 1.90562 1.27936 1.87323 1.39006 1.45835 1.33301 1.05315 1.53764 1.20075 0.99072 0.82925 0.89617 0.88481 1.21668 1.03305 1.01469 0.89102 1.23459 0.78083 0.81789 0.85867 1.90860 1.38605 1.23592 1.84432 1.84505 1.74125 1.52549 1.22511 1.22682 1.04439 0.97679 0.94613 1.22959 0.91077 1.03253 1.03907 1.23370 0.99828 1.02915 0.95530 1.20326 0.94389 0.96383 0.95694 1.20649 1.04325 0.92820 1.07690 0.90188 0.86214 0.88201 0.77199 0.86523 0.87168 0.73206 0.87602 0.88158 0.89554 0.89728 0.85796 0.89577 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.14 10.95 55.56 0.61 -18.53 16 2 C 0.07 1.77 5.14 -17.31 -0.09 1.68 16 3 Si 0.91 17.61 29.60 -169.99 -5.03 12.58 16 4 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 6 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.45 -11.20 9.04 -37.75 -0.34 -11.54 16 8 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 9 C 0.13 3.31 5.57 -106.81 -0.60 2.72 16 10 C -0.18 -4.73 8.63 -39.27 -0.34 -5.07 16 11 C -0.04 -0.88 9.52 -39.61 -0.38 -1.26 16 12 C -0.28 -6.46 5.89 -104.73 -0.62 -7.07 16 13 C 0.58 12.20 6.60 -12.42 -0.08 12.12 16 14 O -0.57 -13.23 13.35 5.29 0.07 -13.16 16 15 N -0.73 -11.78 2.70 -54.82 -0.15 -11.93 16 16 C 0.19 2.52 1.99 -67.94 -0.14 2.38 16 17 H 0.10 1.58 7.39 -51.93 -0.38 1.20 16 18 C -0.12 -1.10 5.34 -27.88 -0.15 -1.25 16 19 C 0.47 5.52 8.19 36.01 0.29 5.82 16 20 O -0.49 -8.19 16.11 -18.75 -0.30 -8.49 16 21 O -0.52 -4.71 13.42 -39.26 -0.53 -5.24 16 22 C -0.17 -2.09 5.70 -90.62 -0.52 -2.60 16 23 C -0.17 -2.26 9.74 -26.70 -0.26 -2.52 16 24 C -0.18 -2.59 9.83 -26.70 -0.26 -2.85 16 25 C -0.05 -1.05 9.47 -39.61 -0.38 -1.43 16 26 C -0.24 -5.51 9.73 -39.27 -0.38 -5.89 16 27 H 0.29 6.44 8.29 -40.82 -0.34 6.10 16 28 H 0.12 3.18 6.16 -52.49 -0.32 2.85 16 29 H 0.10 2.45 7.63 -52.49 -0.40 2.05 16 30 H 0.39 5.73 6.60 -40.82 -0.27 5.46 16 31 H 0.12 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.41 2.29 9.10 45.56 0.41 2.71 16 34 H 0.11 0.97 8.11 -51.93 -0.42 0.55 16 35 H 0.10 1.49 6.67 -51.93 -0.35 1.14 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.12 2.28 5.01 -51.93 -0.26 2.02 16 39 H 0.09 1.53 6.37 -52.48 -0.33 1.20 16 40 H 0.10 2.07 8.06 -52.48 -0.42 1.64 16 LS Contribution 337.74 15.07 5.09 5.09 Total: -1.00 -31.58 337.74 -8.45 -40.03 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -3.99 Total: 16.43 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -4.23 Total: -16.77 kcal Atomic # 7 Polarization: -30.92 SS G_CDS: 0.46 Total: -30.46 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.76 Total: -26.89 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.58 -8.45 -40.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095989459.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.478 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds