Wall clock time and date at job start Fri Apr 10 2020 17:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86801 * 120.00113 * 2 1 4 4 H 1.48498 * 109.47059 * 269.99656 * 3 2 1 5 5 H 1.48495 * 109.46824 * 29.99819 * 3 2 1 6 6 H 1.48505 * 109.46843 * 149.99784 * 3 2 1 7 7 C 1.40229 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99587 * 197.73174 * 7 2 1 9 9 C 1.41107 * 120.00101 * 17.72871 * 7 2 1 10 10 C 1.40883 * 120.10176 * 24.81140 * 9 7 2 11 11 C 1.36320 * 119.89093 * 180.22954 * 10 9 7 12 12 C 1.40019 * 120.10443 * 359.49674 * 11 10 9 13 13 C 1.47644 * 119.89372 * 180.27875 * 12 11 10 14 14 O 1.21585 * 120.00070 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00056 * 179.97438 * 13 12 11 16 16 C 1.46491 * 120.00301 * 179.97438 * 15 13 12 17 17 H 1.09003 * 109.47014 * 325.00070 * 16 15 13 18 18 C 1.53003 * 109.47294 * 204.99837 * 16 15 13 19 19 C 1.50704 * 109.47010 * 65.00196 * 18 16 15 20 20 O 1.20824 * 119.99846 * 359.97438 * 19 18 16 21 21 O 1.34230 * 120.00142 * 180.02562 * 19 18 16 22 22 C 1.52995 * 109.47220 * 84.99726 * 16 15 13 23 23 C 1.52999 * 117.50058 * 8.74954 * 22 16 15 24 24 C 1.52998 * 117.50229 * 300.08900 * 22 16 15 25 25 C 1.40009 * 120.20636 * 0.25449 * 12 11 10 26 26 C 1.36308 * 120.11076 * 0.02562 * 25 12 11 27 27 H 0.97002 * 119.99718 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.06120 * 359.97438 * 10 9 7 29 29 H 1.08002 * 119.94809 * 179.77072 * 11 10 9 30 30 H 0.97003 * 119.99297 * 359.97438 * 15 13 12 31 31 H 1.08999 * 109.46929 * 184.99875 * 18 16 15 32 32 H 1.08997 * 109.47230 * 305.00360 * 18 16 15 33 33 H 0.96691 * 116.99971 * 179.97438 * 21 19 18 34 34 H 1.09002 * 115.54957 * 154.41796 * 22 16 15 35 35 H 1.09005 * 117.49853 * 359.97438 * 23 22 16 36 36 H 1.09002 * 117.50167 * 145.01456 * 23 22 16 37 37 H 1.08994 * 117.50416 * 214.97992 * 24 22 16 38 38 H 1.09000 * 117.49679 * 0.02562 * 24 22 16 39 39 H 1.08006 * 119.94089 * 180.02562 * 25 12 11 40 40 H 1.08004 * 120.05591 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4881 2.0463 -1.4001 5 1 1.4379 2.6526 0.7000 6 1 3.5380 1.4401 0.7001 7 6 2.0075 -1.2144 -0.0005 8 1 3.0491 -1.2368 0.2843 9 6 1.3522 -2.4073 -0.3732 10 6 0.2237 -2.3601 -1.2151 11 6 -0.4089 -3.5147 -1.5686 12 6 0.0676 -4.7469 -1.1049 13 6 -0.6174 -5.9951 -1.4957 14 8 -1.5940 -5.9519 -2.2187 15 7 -0.1603 -7.1824 -1.0510 16 6 -0.8403 -8.4208 -1.4382 17 1 -1.9127 -8.2393 -1.5100 18 6 -0.5748 -9.4990 -0.3857 19 6 -1.2039 -9.0907 0.9215 20 8 -1.8028 -8.0445 1.0029 21 8 -1.0982 -9.8889 1.9955 22 6 -0.3107 -8.8907 -2.7945 23 6 0.9046 -8.1608 -3.3699 24 6 -0.4802 -7.9451 -3.9853 25 6 1.1920 -4.7992 -0.2722 26 6 1.8277 -3.6495 0.0912 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1423 -1.4105 -1.5766 29 1 -1.2764 -3.4793 -2.2110 30 1 0.6191 -7.2168 -0.4745 31 1 -1.0057 -10.4439 -0.7168 32 1 0.5002 -9.6176 -0.2501 33 1 -1.5178 -9.5844 2.8117 34 1 -0.3923 -9.9607 -2.9859 35 1 1.3267 -7.3455 -2.7823 36 1 1.6225 -8.7505 -3.9401 37 1 -0.6729 -8.3929 -4.9602 38 1 -0.9686 -6.9880 -3.8024 39 1 1.5562 -5.7520 0.0826 40 1 2.6952 -3.6909 0.7333 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095989459.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:33 Heat of formation + Delta-G solvation = -108.366756 kcal Electronic energy + Delta-G solvation = -24423.465894 eV Core-core repulsion = 20781.551563 eV Total energy + Delta-G solvation = -3641.914331 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.62898 -40.72510 -39.24023 -37.92477 -37.04054 -35.70053 -35.04024 -32.63666 -31.77307 -31.05830 -27.85790 -26.35309 -23.87118 -23.22238 -22.81926 -22.29689 -21.39339 -20.86291 -19.35787 -18.96311 -18.42007 -17.57212 -17.35837 -17.08430 -16.88899 -16.51207 -15.75870 -15.60767 -15.17149 -15.07786 -14.47552 -14.35475 -14.02466 -13.98513 -13.66815 -13.45430 -13.21958 -12.94715 -12.86104 -12.71810 -12.62716 -12.46347 -12.37522 -12.20609 -11.76494 -11.60387 -11.36995 -11.20398 -11.13686 -10.87224 -10.58581 -9.90822 -9.57663 -9.41223 -8.79147 -6.48766 0.46344 1.13872 1.29902 1.36934 1.43009 1.52562 2.12109 2.14357 2.19876 2.37974 2.81267 2.99422 3.55438 3.68943 3.93887 4.11379 4.23096 4.26655 4.27775 4.34152 4.39501 4.46587 4.64012 4.70853 4.89932 4.93143 4.96831 5.01620 5.09313 5.20238 5.25772 5.32209 5.47099 5.57906 5.68788 5.70905 5.78639 5.95762 6.01175 6.19568 6.55416 6.75695 6.76317 6.89479 7.05331 7.54412 8.16235 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.020035 B = 0.003544 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.231481 B = 7899.855439 C = 8580.904672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.033 3.967 3 Si 0.990 3.010 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.250 1.250 7 C -0.474 4.474 8 H 0.092 0.908 9 C 0.100 3.900 10 C -0.202 4.202 11 C -0.052 4.052 12 C -0.291 4.291 13 C 0.579 3.421 14 O -0.597 6.597 15 N -0.711 5.711 16 C 0.182 3.818 17 H 0.063 0.937 18 C -0.108 4.108 19 C 0.472 3.528 20 O -0.551 6.551 21 O -0.512 6.512 22 C -0.149 4.149 23 C -0.168 4.168 24 C -0.210 4.210 25 C -0.038 4.038 26 C -0.246 4.246 27 H 0.295 0.705 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.403 0.597 31 H 0.159 0.841 32 H 0.143 0.857 33 H 0.424 0.576 34 H 0.151 0.849 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.130 0.870 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.695 -17.987 0.596 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.173 1.173 7 C -0.501 4.501 8 H 0.111 0.889 9 C 0.097 3.903 10 C -0.222 4.222 11 C -0.072 4.072 12 C -0.295 4.295 13 C 0.373 3.627 14 O -0.481 6.481 15 N -0.362 5.362 16 C 0.077 3.923 17 H 0.081 0.919 18 C -0.145 4.145 19 C 0.316 3.684 20 O -0.441 6.441 21 O -0.326 6.326 22 C -0.168 4.168 23 C -0.205 4.205 24 C -0.247 4.247 25 C -0.057 4.057 26 C -0.265 4.265 27 H 0.106 0.894 28 H 0.120 0.880 29 H 0.106 0.894 30 H 0.240 0.760 31 H 0.176 0.824 32 H 0.161 0.839 33 H 0.285 0.715 34 H 0.169 0.831 35 H 0.096 0.904 36 H 0.133 0.867 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.148 0.852 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.813 -17.703 -0.195 17.926 hybrid contribution -0.280 1.509 0.790 1.726 sum 2.533 -16.194 0.595 16.402 Atomic orbital electron populations 1.69817 1.09632 1.31501 1.32072 1.27044 0.95439 1.05282 0.90765 0.85072 0.79232 0.74986 0.79726 1.18612 1.19200 1.17312 1.20151 0.98870 0.92063 1.39058 0.88948 1.18133 0.90772 0.93729 0.87640 1.20928 1.01168 0.96560 1.03529 1.20544 0.97011 0.92647 0.96951 1.19258 1.04149 0.92273 1.13834 1.18201 0.82233 0.84089 0.78189 1.90558 1.29278 1.87930 1.40369 1.45628 1.33071 1.04962 1.52543 1.20274 0.97034 0.82740 0.92279 0.91883 1.21729 1.05363 1.01002 0.86385 1.23939 0.76684 0.80811 0.86975 1.90865 1.41510 1.26296 1.85409 1.84471 1.73698 1.51607 1.22783 1.22778 1.02499 0.99313 0.92226 1.22962 0.90992 1.02997 1.03588 1.23263 1.01440 1.02152 0.97838 1.20649 0.93048 0.97829 0.94183 1.20929 1.05098 0.92531 1.07946 0.89440 0.87961 0.89393 0.76014 0.82392 0.83897 0.71473 0.83113 0.90433 0.86717 0.87969 0.90383 0.85232 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.65 10.95 21.87 0.24 -41.41 16 2 C 0.03 1.60 5.14 85.35 0.44 2.04 16 3 Si 0.99 36.19 29.60 68.60 2.03 38.23 16 4 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 5 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 6 H -0.25 -8.67 7.11 99.48 0.71 -7.96 16 7 C -0.47 -24.39 9.04 23.46 0.21 -24.18 16 8 H 0.09 4.43 7.91 -2.91 -0.02 4.40 16 9 C 0.10 5.35 5.57 -21.28 -0.12 5.23 16 10 C -0.20 -11.15 8.63 22.47 0.19 -10.96 16 11 C -0.05 -2.76 9.52 22.25 0.21 -2.55 16 12 C -0.29 -13.79 5.89 -19.93 -0.12 -13.91 16 13 C 0.58 24.96 6.60 86.73 0.57 25.54 16 14 O -0.60 -29.43 13.35 -3.98 -0.05 -29.48 16 15 N -0.71 -22.19 2.70 -445.61 -1.21 -23.39 16 16 C 0.18 4.46 1.99 44.99 0.09 4.55 16 17 H 0.06 2.05 7.39 -2.39 -0.02 2.03 16 18 C -0.11 -1.54 5.34 29.85 0.16 -1.38 16 19 C 0.47 9.90 8.19 71.24 0.58 10.48 16 20 O -0.55 -18.11 16.11 21.97 0.35 -17.75 16 21 O -0.51 -7.47 13.42 -51.42 -0.69 -8.16 16 22 C -0.15 -3.08 5.70 -10.80 -0.06 -3.14 16 23 C -0.17 -3.93 9.74 30.62 0.30 -3.63 16 24 C -0.21 -5.90 9.83 30.62 0.30 -5.60 16 25 C -0.04 -1.63 9.47 22.25 0.21 -1.42 16 26 C -0.25 -11.52 9.73 22.47 0.22 -11.30 16 27 H 0.29 13.66 8.29 -92.71 -0.77 12.90 16 28 H 0.10 5.85 6.16 -2.91 -0.02 5.84 16 29 H 0.09 4.72 7.63 -2.91 -0.02 4.70 16 30 H 0.40 10.77 6.60 -92.71 -0.61 10.15 16 31 H 0.16 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.42 3.65 9.10 -74.06 -0.67 2.97 16 34 H 0.15 1.85 8.11 -2.39 -0.02 1.83 16 35 H 0.08 2.18 6.67 -2.38 -0.02 2.17 16 36 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.08 3.01 5.01 -2.39 -0.01 2.99 16 39 H 0.13 4.27 6.37 -2.91 -0.02 4.25 16 40 H 0.12 4.86 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -75.35 337.74 3.69 -71.67 By element: Atomic # 1 Polarization: 40.72 SS G_CDS: -0.18 Total: 40.54 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: 3.19 Total: -30.23 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: -0.97 Total: -64.80 kcal Atomic # 8 Polarization: -55.01 SS G_CDS: -0.39 Total: -55.40 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 2.03 Total: 38.23 kcal Total: -75.35 3.69 -71.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095989459.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.699 kcal (2) G-P(sol) polarization free energy of solvation -75.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds