Wall clock time and date at job start Fri Apr 10 2020 17:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00023 * 2 1 4 4 H 1.48500 * 109.47078 * 269.99708 * 3 2 1 5 5 H 1.48501 * 109.46929 * 29.99725 * 3 2 1 6 6 H 1.48495 * 109.47119 * 149.99725 * 3 2 1 7 7 C 1.37879 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99697 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00382 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47494 * 179.97438 * 9 7 2 11 11 C 1.46499 * 119.99970 * 269.99921 * 10 9 7 12 12 C 1.53003 * 109.47277 * 270.00084 * 11 10 9 13 13 C 1.52999 * 117.49547 * 243.74807 * 12 11 10 14 14 C 1.52994 * 117.49940 * 175.08890 * 12 11 10 15 15 C 1.34781 * 120.00069 * 89.99840 * 10 9 7 16 16 O 1.21709 * 120.00001 * 0.02562 * 15 10 9 17 17 C 1.46342 * 119.99879 * 180.02562 * 15 10 9 18 18 C 1.34889 * 120.00028 * 187.06117 * 17 15 10 19 19 C 1.47112 * 119.99839 * 11.28713 * 18 17 15 20 20 C 1.39893 * 120.14386 * 42.56543 * 19 18 17 21 21 C 1.37789 * 119.85045 * 179.97438 * 20 19 18 22 22 C 1.38685 * 120.14626 * 0.25213 * 21 20 19 23 23 F 1.35102 * 119.85409 * 179.74583 * 22 21 20 24 24 C 1.38684 * 120.28919 * 359.48853 * 22 21 20 25 25 C 1.37786 * 120.14451 * 0.51785 * 24 22 21 26 26 H 0.96995 * 120.00148 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47123 * 59.99268 * 9 7 2 28 28 H 1.09005 * 109.46953 * 299.99807 * 9 7 2 29 29 H 1.09001 * 109.47200 * 30.00081 * 11 10 9 30 30 H 1.09002 * 109.47298 * 149.99570 * 11 10 9 31 31 H 1.09001 * 115.54866 * 29.41469 * 12 11 10 32 32 H 1.09001 * 117.50343 * 359.97438 * 13 12 11 33 33 H 1.08998 * 117.50013 * 145.01854 * 13 12 11 34 34 H 1.08999 * 117.50127 * 214.97807 * 14 12 11 35 35 H 1.09001 * 117.50253 * 359.97438 * 14 12 11 36 36 H 1.08003 * 120.00311 * 7.05369 * 17 15 10 37 37 H 1.07999 * 120.00094 * 191.28021 * 18 17 15 38 38 H 1.07999 * 120.07781 * 359.95464 * 20 19 18 39 39 H 1.08003 * 119.92935 * 179.97438 * 21 20 19 40 40 H 1.08002 * 119.92693 * 180.24866 * 24 22 21 41 41 H 1.07998 * 120.07293 * 179.76457 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6790 -4.1694 -1.2682 12 6 1.7483 -5.3006 -1.7099 13 6 2.3396 -6.7091 -1.7954 14 6 2.0100 -5.9380 -3.0759 15 6 2.6410 -4.1249 1.1678 16 8 2.2452 -3.6626 2.2218 17 6 3.5924 -5.2368 1.1677 18 6 3.9216 -5.8428 2.3270 19 6 3.1512 -5.5620 3.5484 20 6 1.7554 -5.4842 3.4963 21 6 1.0398 -5.2214 4.6441 22 6 1.7006 -5.0290 5.8481 23 9 0.9934 -4.7666 6.9689 24 6 3.0838 -5.1101 5.9076 25 6 3.8113 -5.3721 4.7671 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 2.6868 -3.3878 -2.0279 30 1 3.6885 -4.5594 -1.1379 31 1 0.7111 -5.2089 -1.3877 32 1 3.3917 -6.8299 -1.5374 33 1 1.6913 -7.5441 -1.5298 34 1 1.1449 -6.2660 -3.6523 35 1 2.8449 -5.5512 -3.6602 36 1 4.0309 -5.5724 0.2395 37 1 4.7507 -6.5342 2.3584 38 1 1.2399 -5.6296 2.5585 39 1 -0.0378 -5.1607 4.6052 40 1 3.5922 -4.9632 6.8491 41 1 4.8886 -5.4312 4.8141 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096292769.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:36 Heat of formation + Delta-G solvation = -16.832184 kcal Electronic energy + Delta-G solvation = -24429.252125 eV Core-core repulsion = 20803.679821 eV Total energy + Delta-G solvation = -3625.572304 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.89873 -41.09509 -39.59456 -38.25466 -36.16651 -34.64250 -34.46262 -32.05011 -30.64460 -29.46495 -27.59729 -25.75230 -24.16107 -23.67256 -23.13210 -22.14246 -21.54605 -19.41159 -18.80523 -18.56528 -18.32336 -17.26193 -17.11153 -16.59357 -16.46266 -16.09056 -16.01975 -15.45598 -15.11650 -14.72891 -14.66739 -14.45719 -14.28324 -14.10509 -13.88241 -13.63838 -13.28190 -13.11648 -12.91686 -12.64222 -12.55057 -12.34974 -12.23453 -12.20237 -11.96740 -11.74144 -11.21808 -10.93930 -10.68230 -10.64724 -10.47976 -9.93788 -9.29841 -8.94897 -8.22878 -6.37838 -0.26922 0.43074 0.87718 1.33900 1.37057 1.47181 2.29251 2.48652 2.55233 2.78014 3.02008 3.06267 3.33971 3.73660 3.82424 3.89093 3.95871 3.98214 4.08082 4.21952 4.31893 4.34478 4.46931 4.64261 4.77316 4.86420 4.88611 4.95514 4.99381 5.03243 5.10905 5.14907 5.20450 5.22179 5.33026 5.35866 5.36393 5.44304 5.57154 5.69118 5.88644 6.01066 6.06583 6.70877 6.87492 7.28923 7.57632 8.83563 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.009412 B = 0.005494 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.199184 B = 5095.574843 C = 7197.537083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.053 0.947 9 C 0.266 3.734 10 N -0.594 5.594 11 C 0.142 3.858 12 C -0.193 4.193 13 C -0.158 4.158 14 C -0.166 4.166 15 C 0.517 3.483 16 O -0.578 6.578 17 C -0.206 4.206 18 C -0.020 4.020 19 C -0.088 4.088 20 C -0.015 4.015 21 C -0.188 4.188 22 C 0.081 3.919 23 F -0.152 7.152 24 C -0.169 4.169 25 C -0.071 4.071 26 H 0.266 0.734 27 H 0.015 0.985 28 H -0.004 1.004 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.166 0.834 37 H 0.188 0.812 38 H 0.107 0.893 39 H 0.124 0.876 40 H 0.157 0.843 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.793 -17.448 0.545 20.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.071 0.929 9 C 0.145 3.855 10 N -0.323 5.323 11 C 0.019 3.981 12 C -0.212 4.212 13 C -0.195 4.195 14 C -0.203 4.203 15 C 0.309 3.691 16 O -0.461 6.461 17 C -0.226 4.226 18 C -0.039 4.039 19 C -0.088 4.088 20 C -0.034 4.034 21 C -0.207 4.207 22 C 0.062 3.938 23 F -0.131 7.131 24 C -0.188 4.188 25 C -0.089 4.089 26 H 0.075 0.925 27 H 0.033 0.967 28 H 0.014 0.986 29 H 0.087 0.913 30 H 0.122 0.878 31 H 0.093 0.907 32 H 0.135 0.865 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.127 0.873 36 H 0.183 0.817 37 H 0.205 0.795 38 H 0.125 0.875 39 H 0.142 0.858 40 H 0.174 0.826 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 10.381 -17.052 1.083 19.993 hybrid contribution -0.949 1.612 0.143 1.876 sum 9.432 -15.440 1.226 18.134 Atomic orbital electron populations 1.70055 1.07595 1.28037 1.51265 1.25850 0.95751 1.03024 0.94549 0.85450 0.78299 0.78469 0.78824 1.18682 1.20813 1.19736 1.21694 0.93179 0.91949 1.50848 0.92922 1.18621 0.87920 0.83832 0.95171 1.48145 1.44300 1.33413 1.06442 1.21247 0.97282 0.94798 0.84761 1.22634 0.99643 0.95548 1.03401 1.23161 1.02592 0.92995 1.00750 1.23030 1.03998 1.03142 0.90132 1.19235 0.82026 0.84730 0.83132 1.90826 1.59956 1.63761 1.31557 1.23267 1.01223 0.97278 1.00819 1.22721 0.96010 0.96142 0.89055 1.19300 0.92812 1.01788 0.94939 1.20928 0.94102 0.92605 0.95740 1.21033 1.00921 1.06309 0.92434 1.18078 0.90897 1.02735 0.82106 1.91435 1.79265 1.91748 1.50641 1.21223 0.91096 1.04922 1.01542 1.21422 1.01295 0.96324 0.89831 0.92523 0.96669 0.98597 0.91343 0.87785 0.90679 0.86498 0.88506 0.88555 0.87283 0.81651 0.79477 0.87526 0.85813 0.82577 0.81361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.97 45.70 29.54 68.60 2.03 47.72 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 6 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.54 -31.41 9.39 25.60 0.24 -31.17 16 8 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 9 C 0.27 14.54 5.16 85.63 0.44 14.98 16 10 N -0.59 -24.97 2.46 -831.27 -2.04 -27.02 16 11 C 0.14 4.36 5.45 86.38 0.47 4.83 16 12 C -0.19 -5.06 6.01 -10.79 -0.06 -5.12 16 13 C -0.16 -2.79 10.12 30.62 0.31 -2.48 16 14 C -0.17 -3.17 10.25 30.62 0.31 -2.86 16 15 C 0.52 20.76 6.60 86.35 0.57 21.33 16 16 O -0.58 -28.43 11.70 -4.38 -0.05 -28.48 16 17 C -0.21 -5.37 9.13 23.61 0.22 -5.15 16 18 C -0.02 -0.43 9.81 23.83 0.23 -0.20 16 19 C -0.09 -2.50 4.58 -20.15 -0.09 -2.59 16 20 C -0.02 -0.52 6.58 22.56 0.15 -0.37 16 21 C -0.19 -6.56 10.01 22.27 0.22 -6.34 16 22 C 0.08 2.63 7.31 22.48 0.16 2.79 16 23 F -0.15 -5.00 17.26 44.97 0.78 -4.23 16 24 C -0.17 -4.50 10.01 22.27 0.22 -4.27 16 25 C -0.07 -1.72 9.79 22.56 0.22 -1.50 16 26 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 27 H 0.02 0.86 8.07 -2.39 -0.02 0.84 16 28 H 0.00 -0.26 7.42 -2.38 -0.02 -0.28 16 29 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 30 H 0.10 2.41 5.75 -2.39 -0.01 2.40 16 31 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.12 1.51 7.54 -2.39 -0.02 1.49 16 33 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.17 3.00 5.59 -2.91 -0.02 2.99 16 37 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 38 H 0.11 3.89 6.92 -2.91 -0.02 3.87 16 39 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 40 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 41 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -77.09 351.49 6.11 -70.98 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 1.03 Total: 15.37 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 4.08 Total: -17.26 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -1.76 Total: -84.11 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.05 Total: -28.48 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.78 Total: -4.23 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -77.09 6.11 -70.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096292769.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.148 kcal (2) G-P(sol) polarization free energy of solvation -77.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds