Wall clock time and date at job start Fri Apr 10 2020 17:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21275 * 120.00618 * 2 1 4 4 N 1.34783 * 119.99431 * 179.97438 * 2 1 3 5 5 C 1.39411 * 119.99527 * 185.42673 * 4 2 1 6 6 C 1.39157 * 119.92262 * 32.30871 * 5 4 2 7 7 C 1.37648 * 120.07779 * 180.23175 * 6 5 4 8 8 C 1.39805 * 119.92208 * 359.46404 * 7 6 5 9 9 C 1.47455 * 120.08085 * 180.25474 * 8 7 6 10 10 O 1.21507 * 119.99633 * 354.72127 * 9 8 7 11 11 O 1.34752 * 120.00246 * 174.71885 * 9 8 7 12 12 C 1.45200 * 116.99789 * 174.69973 * 11 9 8 13 13 C 1.53005 * 109.46675 * 184.85985 * 12 11 9 14 14 C 1.50705 * 115.54775 * 186.32403 * 13 12 11 15 15 H 1.07995 * 120.00290 * 144.42763 * 14 13 12 16 16 C 1.37882 * 119.99855 * 324.41764 * 14 13 12 17 17 N 1.31508 * 119.99939 * 167.70334 * 16 14 13 18 18 Si 1.86803 * 119.99907 * 347.70981 * 16 14 13 19 19 H 1.48504 * 109.47291 * 95.73955 * 18 16 14 20 20 H 1.48498 * 109.46930 * 215.73903 * 18 16 14 21 21 H 1.48495 * 109.47212 * 335.73658 * 18 16 14 22 22 C 1.52994 * 117.50151 * 40.64848 * 13 12 11 23 23 C 1.52997 * 117.49943 * 331.98523 * 13 12 11 24 24 C 1.39810 * 119.84216 * 0.28224 * 8 7 6 25 25 C 1.37647 * 119.91963 * 359.97438 * 24 8 7 26 26 H 1.08990 * 109.47133 * 270.00276 * 1 2 3 27 27 H 1.09001 * 109.46519 * 30.00200 * 1 2 3 28 28 H 1.09002 * 109.47047 * 150.00118 * 1 2 3 29 29 H 0.96990 * 120.00417 * 5.43586 * 4 2 1 30 30 H 1.07995 * 119.95833 * 359.97438 * 6 5 4 31 31 H 1.07996 * 120.03551 * 179.74452 * 7 6 5 32 32 H 1.08990 * 109.47656 * 304.86093 * 12 11 9 33 33 H 1.08998 * 109.47156 * 64.86545 * 12 11 9 34 34 H 0.97004 * 120.00024 * 180.02562 * 17 16 14 35 35 H 1.08999 * 117.49815 * 0.02562 * 22 13 12 36 36 H 1.08997 * 117.49647 * 145.01629 * 22 13 12 37 37 H 1.09002 * 117.49847 * 214.97752 * 23 13 12 38 38 H 1.08996 * 117.50242 * 359.97438 * 23 13 12 39 39 H 1.08000 * 120.04145 * 180.02562 * 24 8 7 40 40 H 1.08002 * 119.95503 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5703 -1.1700 0.1147 6 6 4.2073 -0.1833 0.8611 7 6 5.5793 -0.1801 0.9720 8 6 6.3322 -1.1762 0.3430 9 6 7.8017 -1.1794 0.4642 10 8 8.3666 -0.2641 1.0295 11 8 8.5182 -2.1973 -0.0518 12 6 9.9643 -2.0779 -0.0009 13 6 10.5998 -3.2599 -0.7357 14 6 12.1010 -3.3534 -0.6405 15 1 12.5795 -4.3200 -0.5857 16 6 12.8635 -2.2047 -0.6234 17 7 14.1367 -2.2654 -0.3000 18 14 12.0879 -0.5622 -1.0595 19 1 11.6750 0.1361 0.1844 20 1 13.0744 0.2722 -1.7914 21 1 10.8978 -0.7892 -1.9181 22 6 9.9451 -3.7146 -2.0416 23 6 9.8119 -4.5706 -0.7796 24 6 5.6884 -2.1690 -0.4016 25 6 4.3164 -2.1629 -0.5126 26 1 -0.3633 0.0000 1.0276 27 1 -0.3632 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6992 -2.0054 -0.0787 30 1 3.6249 0.5833 1.3504 31 1 6.0733 0.5884 1.5480 32 1 10.2691 -1.1468 -0.4785 33 1 10.2925 -2.0774 1.0385 34 1 14.6731 -1.4573 -0.2877 35 1 9.0619 -3.1713 -2.3775 36 1 10.6001 -4.0815 -2.8318 37 1 10.3793 -5.5005 -0.7402 38 1 8.8410 -4.5911 -0.2847 39 1 6.2667 -2.9403 -0.8885 40 1 3.8185 -2.9294 -1.0881 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096442785.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:43 Heat of formation + Delta-G solvation = -54.273339 kcal Electronic energy + Delta-G solvation = -23861.562637 eV Core-core repulsion = 20221.993973 eV Total energy + Delta-G solvation = -3639.568664 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.99614 -40.08039 -38.50054 -37.09223 -35.30979 -35.16120 -32.27944 -31.48269 -31.22318 -29.38996 -27.66732 -25.41370 -23.92973 -23.15121 -21.40190 -21.15779 -20.63174 -19.16967 -18.37070 -17.73175 -17.40498 -16.94385 -16.08720 -15.97749 -15.93631 -15.02135 -14.78957 -14.47926 -14.39462 -13.91067 -13.63608 -13.58727 -13.31416 -13.10501 -12.96061 -12.73973 -12.60506 -12.39000 -11.80100 -11.50694 -11.11174 -10.79152 -10.76577 -10.52657 -10.43457 -10.40480 -10.20903 -9.73151 -9.50933 -9.25595 -9.22351 -8.72233 -8.49528 -8.33749 -6.25934 -4.20004 0.52060 1.18369 2.01524 2.54768 2.73745 3.03917 3.25830 3.33435 3.37086 3.69337 4.16921 4.28321 4.56153 4.65473 4.70914 4.72205 4.81519 4.92178 5.08968 5.14889 5.25081 5.31339 5.36820 5.71793 5.76856 5.81305 5.88900 5.95501 6.01511 6.11538 6.19546 6.26388 6.52416 6.59083 6.64649 6.72901 6.85923 6.94267 7.00569 7.21767 7.58217 7.61683 8.09724 8.39918 8.79157 9.36837 10.85969 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.030130 B = 0.003109 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.093128 B = 9002.817264 C = 9577.575247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.508 3.492 3 O -0.520 6.520 4 N -0.674 5.674 5 C 0.173 3.827 6 C -0.138 4.138 7 C -0.035 4.035 8 C -0.134 4.134 9 C 0.500 3.500 10 O -0.510 6.510 11 O -0.347 6.347 12 C 0.086 3.914 13 C 0.005 3.995 14 C -0.483 4.483 15 H 0.086 0.914 16 C 0.079 3.921 17 N -0.882 5.882 18 Si 0.870 3.130 19 H -0.272 1.272 20 H -0.290 1.290 21 H -0.259 1.259 22 C -0.200 4.200 23 C -0.178 4.178 24 C -0.039 4.039 25 C -0.161 4.161 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.414 0.586 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.269 0.731 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.146 0.854 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.758 0.188 0.421 28.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.297 3.703 3 O -0.394 6.394 4 N -0.319 5.319 5 C 0.078 3.922 6 C -0.158 4.158 7 C -0.054 4.054 8 C -0.136 4.136 9 C 0.344 3.656 10 O -0.400 6.400 11 O -0.263 6.263 12 C 0.014 3.986 13 C 0.004 3.996 14 C -0.520 4.520 15 H 0.104 0.896 16 C -0.126 4.126 17 N -0.518 5.518 18 Si 0.700 3.300 19 H -0.198 1.198 20 H -0.217 1.217 21 H -0.185 1.185 22 C -0.238 4.238 23 C -0.215 4.215 24 C -0.057 4.057 25 C -0.181 4.181 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.102 0.898 29 H 0.250 0.750 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.164 0.836 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -27.991 1.323 0.641 28.030 hybrid contribution -0.424 0.545 -0.268 0.741 sum -28.416 1.868 0.372 28.479 Atomic orbital electron populations 1.21900 0.90398 1.05438 1.05305 1.21096 0.91042 0.83083 0.75081 1.90784 1.70483 1.31192 1.46944 1.43626 1.05340 1.10241 1.72703 1.17983 0.82787 0.96431 0.95042 1.21047 0.94250 1.00227 1.00248 1.21176 0.92851 0.95986 0.95413 1.19257 0.89993 0.99381 1.04977 1.21084 0.88350 0.80222 0.75925 1.90835 1.72632 1.36179 1.40363 1.86491 1.23090 1.43288 1.73477 1.23585 0.72811 1.00205 1.01962 1.19372 0.94165 0.90427 0.95636 1.20289 0.85431 0.95105 1.51166 0.89610 1.24994 0.94882 0.98867 0.93821 1.69895 1.07067 1.29478 1.45358 0.87196 0.78546 0.84278 0.79957 1.19801 1.21681 1.18482 1.23105 1.02348 1.05743 0.92608 1.22735 1.00745 0.95509 1.02506 1.21345 0.93723 0.96335 0.94333 1.20837 0.93833 1.00869 1.02574 0.88252 0.88352 0.89798 0.74991 0.84028 0.84096 0.91641 0.90465 0.92123 0.91055 0.89723 0.89996 0.90231 0.83595 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.52 10.31 36.01 0.37 -0.15 16 2 C 0.51 3.94 7.67 -10.98 -0.08 3.85 16 3 O -0.52 -6.54 14.70 5.56 0.08 -6.46 16 4 N -0.67 -4.46 5.32 -9.85 -0.05 -4.51 16 5 C 0.17 1.73 6.30 -83.73 -0.53 1.21 16 6 C -0.14 -1.66 8.63 -39.46 -0.34 -2.00 16 7 C -0.04 -0.49 9.58 -39.21 -0.38 -0.86 16 8 C -0.13 -2.03 5.87 -104.97 -0.62 -2.65 16 9 C 0.50 9.62 7.87 34.48 0.27 9.89 16 10 O -0.51 -11.28 16.13 -19.27 -0.31 -11.59 16 11 O -0.35 -7.04 7.75 -40.63 -0.31 -7.35 16 12 C 0.09 2.03 4.12 37.16 0.15 2.18 16 13 C 0.01 0.12 1.84 -155.66 -0.29 -0.17 16 14 C -0.48 -13.51 9.57 -34.44 -0.33 -13.84 16 15 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 16 C 0.08 2.26 5.42 -17.82 -0.10 2.16 16 17 N -0.88 -26.53 13.96 55.43 0.77 -25.76 16 18 Si 0.87 22.29 24.22 -169.99 -4.12 18.17 16 19 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 21 H -0.26 -6.44 6.36 56.52 0.36 -6.08 16 22 C -0.20 -4.25 9.67 -26.70 -0.26 -4.51 16 23 C -0.18 -3.65 9.63 -26.69 -0.26 -3.90 16 24 C -0.04 -0.47 9.60 -39.21 -0.38 -0.85 16 25 C -0.16 -1.54 9.94 -39.46 -0.39 -1.93 16 26 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 29 H 0.41 1.13 8.81 -40.82 -0.36 0.77 16 30 H 0.14 1.71 6.32 -52.49 -0.33 1.38 16 31 H 0.14 1.93 7.65 -52.49 -0.40 1.53 16 32 H 0.07 1.64 2.62 -51.93 -0.14 1.51 16 33 H 0.08 1.86 8.14 -51.93 -0.42 1.43 16 34 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.07 1.41 7.87 -51.93 -0.41 1.00 16 36 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 37 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.08 1.48 7.46 -51.93 -0.39 1.09 16 39 H 0.15 1.70 7.61 -52.49 -0.40 1.30 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 340.30 15.07 5.13 5.13 Total: -1.00 -34.93 340.30 -6.94 -41.87 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -4.98 Total: 2.07 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -3.15 Total: -11.56 kcal Atomic # 7 Polarization: -30.99 SS G_CDS: 0.72 Total: -30.27 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.54 Total: -25.41 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.12 Total: 18.17 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.93 -6.94 -41.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096442785.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.402 kcal (2) G-P(sol) polarization free energy of solvation -34.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds