Wall clock time and date at job start Fri Apr 10 2020 17:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21275 * 120.00618 * 2 1 4 4 N 1.34783 * 119.99431 * 179.97438 * 2 1 3 5 5 C 1.39411 * 119.99527 * 185.42673 * 4 2 1 6 6 C 1.39157 * 119.92262 * 32.30871 * 5 4 2 7 7 C 1.37648 * 120.07779 * 180.23175 * 6 5 4 8 8 C 1.39805 * 119.92208 * 359.46404 * 7 6 5 9 9 C 1.47455 * 120.08085 * 180.25474 * 8 7 6 10 10 O 1.21507 * 119.99633 * 354.72127 * 9 8 7 11 11 O 1.34752 * 120.00246 * 174.71885 * 9 8 7 12 12 C 1.45200 * 116.99789 * 174.69973 * 11 9 8 13 13 C 1.53005 * 109.46675 * 184.85985 * 12 11 9 14 14 C 1.50705 * 115.54775 * 186.32403 * 13 12 11 15 15 H 1.07995 * 120.00290 * 144.42763 * 14 13 12 16 16 C 1.37882 * 119.99855 * 324.41764 * 14 13 12 17 17 N 1.31508 * 119.99939 * 167.70334 * 16 14 13 18 18 Si 1.86803 * 119.99907 * 347.70981 * 16 14 13 19 19 H 1.48504 * 109.47291 * 95.73955 * 18 16 14 20 20 H 1.48498 * 109.46930 * 215.73903 * 18 16 14 21 21 H 1.48495 * 109.47212 * 335.73658 * 18 16 14 22 22 C 1.52994 * 117.50151 * 40.64848 * 13 12 11 23 23 C 1.52997 * 117.49943 * 331.98523 * 13 12 11 24 24 C 1.39810 * 119.84216 * 0.28224 * 8 7 6 25 25 C 1.37647 * 119.91963 * 359.97438 * 24 8 7 26 26 H 1.08990 * 109.47133 * 270.00276 * 1 2 3 27 27 H 1.09001 * 109.46519 * 30.00200 * 1 2 3 28 28 H 1.09002 * 109.47047 * 150.00118 * 1 2 3 29 29 H 0.96990 * 120.00417 * 5.43586 * 4 2 1 30 30 H 1.07995 * 119.95833 * 359.97438 * 6 5 4 31 31 H 1.07996 * 120.03551 * 179.74452 * 7 6 5 32 32 H 1.08990 * 109.47656 * 304.86093 * 12 11 9 33 33 H 1.08998 * 109.47156 * 64.86545 * 12 11 9 34 34 H 0.97004 * 120.00024 * 180.02562 * 17 16 14 35 35 H 1.08999 * 117.49815 * 0.02562 * 22 13 12 36 36 H 1.08997 * 117.49647 * 145.01629 * 22 13 12 37 37 H 1.09002 * 117.49847 * 214.97752 * 23 13 12 38 38 H 1.08996 * 117.50242 * 359.97438 * 23 13 12 39 39 H 1.08000 * 120.04145 * 180.02562 * 24 8 7 40 40 H 1.08002 * 119.95503 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5703 -1.1700 0.1147 6 6 4.2073 -0.1833 0.8611 7 6 5.5793 -0.1801 0.9720 8 6 6.3322 -1.1762 0.3430 9 6 7.8017 -1.1794 0.4642 10 8 8.3666 -0.2641 1.0295 11 8 8.5182 -2.1973 -0.0518 12 6 9.9643 -2.0779 -0.0009 13 6 10.5998 -3.2599 -0.7357 14 6 12.1010 -3.3534 -0.6405 15 1 12.5795 -4.3200 -0.5857 16 6 12.8635 -2.2047 -0.6234 17 7 14.1367 -2.2654 -0.3000 18 14 12.0879 -0.5622 -1.0595 19 1 11.6750 0.1361 0.1844 20 1 13.0744 0.2722 -1.7914 21 1 10.8978 -0.7892 -1.9181 22 6 9.9451 -3.7146 -2.0416 23 6 9.8119 -4.5706 -0.7796 24 6 5.6884 -2.1690 -0.4016 25 6 4.3164 -2.1629 -0.5126 26 1 -0.3633 0.0000 1.0276 27 1 -0.3632 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6992 -2.0054 -0.0787 30 1 3.6249 0.5833 1.3504 31 1 6.0733 0.5884 1.5480 32 1 10.2691 -1.1468 -0.4785 33 1 10.2925 -2.0774 1.0385 34 1 14.6731 -1.4573 -0.2877 35 1 9.0619 -3.1713 -2.3775 36 1 10.6001 -4.0815 -2.8318 37 1 10.3793 -5.5005 -0.7402 38 1 8.8410 -4.5911 -0.2847 39 1 6.2667 -2.9403 -0.8885 40 1 3.8185 -2.9294 -1.0881 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096442785.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:42 Heat of formation + Delta-G solvation = -77.450875 kcal Electronic energy + Delta-G solvation = -23862.567690 eV Core-core repulsion = 20221.993973 eV Total energy + Delta-G solvation = -3640.573718 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.92637 -41.38105 -39.53931 -38.73078 -36.96346 -35.98630 -34.43738 -32.28311 -32.06258 -30.19371 -29.32361 -27.33757 -25.02929 -24.12543 -23.08257 -22.21645 -21.55394 -21.11873 -19.43388 -18.87561 -18.81206 -17.95962 -17.75548 -17.62461 -16.78638 -16.51620 -16.00208 -15.61555 -15.46141 -15.29092 -15.01961 -14.71036 -14.59323 -14.44609 -13.99424 -13.87182 -13.58561 -13.26815 -13.10583 -13.02165 -12.73762 -12.45762 -12.40378 -12.08070 -11.94675 -11.63886 -11.61999 -11.46793 -11.18558 -11.04287 -10.67759 -10.30157 -10.13162 -9.35411 -8.47401 -6.42308 -0.51869 0.27999 1.17532 1.20892 1.24416 1.27617 1.53031 1.63863 2.00284 2.15511 2.68419 2.73206 3.35011 3.53141 3.65510 3.83634 3.87452 3.92519 3.99480 4.15401 4.16968 4.25928 4.42698 4.45536 4.53697 4.66802 4.74435 4.87887 4.94482 4.96623 5.03095 5.06327 5.14773 5.20786 5.24636 5.28327 5.40132 5.56701 5.57468 5.78471 6.18310 6.35265 6.56118 6.59113 7.04951 7.16149 8.68804 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.030130 B = 0.003109 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.093128 B = 9002.817264 C = 9577.575247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.504 3.496 3 O -0.574 6.574 4 N -0.658 5.658 5 C 0.185 3.815 6 C -0.148 4.148 7 C -0.043 4.043 8 C -0.162 4.162 9 C 0.498 3.502 10 O -0.550 6.550 11 O -0.337 6.337 12 C 0.096 3.904 13 C -0.036 4.036 14 C -0.483 4.483 15 H 0.055 0.945 16 C 0.032 3.968 17 N -0.927 5.927 18 Si 0.923 3.077 19 H -0.283 1.283 20 H -0.285 1.285 21 H -0.246 1.246 22 C -0.181 4.181 23 C -0.152 4.152 24 C -0.034 4.034 25 C -0.144 4.144 26 H 0.116 0.884 27 H 0.094 0.906 28 H 0.118 0.882 29 H 0.437 0.563 30 H 0.137 0.863 31 H 0.127 0.873 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.271 0.729 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.157 0.843 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.479 -1.226 -1.017 33.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.295 3.705 3 O -0.452 6.452 4 N -0.305 5.305 5 C 0.089 3.911 6 C -0.168 4.168 7 C -0.062 4.062 8 C -0.164 4.164 9 C 0.345 3.655 10 O -0.443 6.443 11 O -0.252 6.252 12 C 0.023 3.977 13 C -0.037 4.037 14 C -0.521 4.521 15 H 0.073 0.927 16 C -0.168 4.168 17 N -0.565 5.565 18 Si 0.752 3.248 19 H -0.210 1.210 20 H -0.212 1.212 21 H -0.171 1.171 22 C -0.218 4.218 23 C -0.189 4.189 24 C -0.053 4.053 25 C -0.164 4.164 26 H 0.134 0.866 27 H 0.113 0.887 28 H 0.136 0.864 29 H 0.278 0.722 30 H 0.155 0.845 31 H 0.145 0.855 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.124 0.876 39 H 0.175 0.825 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -32.781 -0.148 -0.816 32.792 hybrid contribution 0.843 0.905 0.216 1.256 sum -31.938 0.757 -0.600 31.953 Atomic orbital electron populations 1.21948 0.86303 1.06992 1.06806 1.22048 0.92884 0.82257 0.73296 1.90776 1.71869 1.33207 1.49371 1.43634 1.03891 1.11395 1.71546 1.18144 0.84602 0.95231 0.93152 1.21048 0.93424 1.01141 1.01173 1.21102 0.93653 0.95762 0.95729 1.19095 0.87205 1.01846 1.08237 1.21895 0.89862 0.79117 0.74616 1.90812 1.73627 1.37531 1.42321 1.86466 1.21127 1.43849 1.73807 1.23119 0.74892 0.99140 1.00575 1.19246 0.92346 0.93112 0.98949 1.20469 0.88000 0.93679 1.49931 0.92684 1.25600 0.95175 1.01773 0.94211 1.69990 1.08423 1.30403 1.47714 0.86338 0.78204 0.80858 0.79420 1.21037 1.21174 1.17063 1.23096 1.02231 1.04801 0.91711 1.22813 1.00931 0.93736 1.01428 1.21520 0.95038 0.95365 0.93333 1.21195 0.92607 1.01077 1.01548 0.86571 0.88675 0.86383 0.72231 0.84493 0.85484 0.93303 0.92318 0.91959 0.88829 0.89778 0.89755 0.87589 0.82543 0.80335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.33 10.31 71.24 0.73 0.40 16 2 C 0.50 6.31 7.67 87.66 0.67 6.98 16 3 O -0.57 -13.79 14.70 -3.02 -0.04 -13.83 16 4 N -0.66 -5.97 5.32 -303.47 -1.62 -7.59 16 5 C 0.19 3.11 6.30 38.38 0.24 3.35 16 6 C -0.15 -3.42 8.63 22.35 0.19 -3.23 16 7 C -0.04 -1.21 9.58 22.51 0.22 -0.99 16 8 C -0.16 -4.76 5.87 -20.09 -0.12 -4.87 16 9 C 0.50 19.21 7.87 70.25 0.55 19.76 16 10 O -0.55 -25.19 16.13 19.81 0.32 -24.87 16 11 O -0.34 -13.27 7.75 -56.62 -0.44 -13.71 16 12 C 0.10 4.50 4.12 71.98 0.30 4.80 16 13 C -0.04 -1.69 1.84 -52.93 -0.10 -1.78 16 14 C -0.48 -27.62 9.57 25.60 0.25 -27.37 16 15 H 0.05 3.40 8.06 -2.91 -0.02 3.37 16 16 C 0.03 1.91 5.42 84.66 0.46 2.37 16 17 N -0.93 -57.71 13.96 21.45 0.30 -57.41 16 18 Si 0.92 47.33 24.22 68.60 1.66 48.99 16 19 H -0.28 -14.92 7.11 99.48 0.71 -14.21 16 20 H -0.28 -14.16 7.11 99.48 0.71 -13.46 16 21 H -0.25 -11.90 6.36 99.48 0.63 -11.27 16 22 C -0.18 -7.20 9.67 30.62 0.30 -6.90 16 23 C -0.15 -5.86 9.63 30.62 0.29 -5.56 16 24 C -0.03 -0.72 9.60 22.51 0.22 -0.50 16 25 C -0.14 -2.09 9.94 22.35 0.22 -1.86 16 26 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 27 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.12 -0.54 8.14 -2.39 -0.02 -0.56 16 29 H 0.44 -0.04 8.81 -92.72 -0.82 -0.86 16 30 H 0.14 3.30 6.32 -2.91 -0.02 3.28 16 31 H 0.13 3.74 7.65 -2.91 -0.02 3.72 16 32 H 0.05 2.46 2.62 -2.39 -0.01 2.46 16 33 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 34 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 35 H 0.09 3.33 7.87 -2.39 -0.02 3.31 16 36 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 37 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.11 3.53 7.46 -2.39 -0.02 3.52 16 39 H 0.16 3.00 7.61 -2.91 -0.02 2.97 16 40 H 0.18 1.04 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -80.62 340.30 4.80 -75.82 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 0.19 Total: 8.02 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 4.42 Total: -15.42 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: -1.32 Total: -65.00 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -0.16 Total: -52.41 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.66 Total: 48.99 kcal Total: -80.62 4.80 -75.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096442785.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.631 kcal (2) G-P(sol) polarization free energy of solvation -80.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds