Wall clock time and date at job start Fri Apr 10 2020 17:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47045 * 2 1 4 4 S 1.81400 * 109.46879 * 119.99674 * 2 1 3 5 5 O 1.42105 * 108.57777 * 70.51534 * 4 2 1 6 6 O 1.42097 * 108.58116 * 299.48704 * 4 2 1 7 7 C 1.81400 * 101.91926 * 184.99824 * 4 2 1 8 8 C 1.50706 * 109.47256 * 179.97438 * 7 4 2 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 4 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 4 11 11 C 1.46496 * 119.99544 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47598 * 90.00303 * 11 10 8 13 13 H 1.08005 * 119.99628 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00538 * 179.97438 * 12 11 10 15 15 N 1.31507 * 120.00182 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99668 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47170 * 89.99666 * 16 14 12 18 18 H 1.48495 * 109.46883 * 209.99839 * 16 14 12 19 19 H 1.48496 * 109.47123 * 329.99923 * 16 14 12 20 20 C 1.46495 * 119.99828 * 0.02562 * 10 8 7 21 21 C 1.53004 * 109.46986 * 90.00387 * 20 10 8 22 22 C 1.52997 * 117.49514 * 243.61460 * 21 20 10 23 23 C 1.52997 * 60.00268 * 252.51458 * 22 21 20 24 24 H 1.08996 * 109.47451 * 299.99867 * 1 2 3 25 25 H 1.09001 * 109.47481 * 60.00422 * 1 2 3 26 26 H 1.09001 * 109.47038 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47145 * 239.99790 * 2 1 3 28 28 H 1.09003 * 109.47208 * 299.99599 * 3 2 1 29 29 H 1.08998 * 109.47524 * 59.99407 * 3 2 1 30 30 H 1.08998 * 109.47083 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46713 * 60.00236 * 7 4 2 32 32 H 1.09000 * 109.47712 * 300.00545 * 7 4 2 33 33 H 1.09008 * 109.47096 * 209.99661 * 11 10 8 34 34 H 1.09003 * 109.47776 * 329.99537 * 11 10 8 35 35 H 0.97002 * 119.99991 * 180.02562 * 15 14 12 36 36 H 1.09004 * 109.46971 * 209.99938 * 20 10 8 37 37 H 1.08993 * 109.47768 * 330.00002 * 20 10 8 38 38 H 1.09000 * 115.55217 * 29.32861 * 21 20 10 39 39 H 1.09003 * 117.50408 * 0.02562 * 22 21 20 40 40 H 1.09009 * 117.49806 * 145.01909 * 22 21 20 41 41 H 1.09001 * 117.49351 * 252.51715 * 23 22 21 42 42 H 1.08988 * 117.50123 * 107.49613 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 16 2.1346 -0.8551 1.4812 5 8 1.8619 -2.2431 1.3457 6 8 1.6604 -0.1636 2.6284 7 6 3.9265 -0.6031 1.3540 8 6 4.6105 -1.2589 2.5259 9 8 3.9537 -1.8395 3.3640 10 7 5.9519 -1.2002 2.6425 11 6 6.6167 -1.8383 3.7814 12 6 6.9621 -3.2620 3.4285 13 1 6.7111 -3.6527 2.4533 14 6 7.5985 -4.0659 4.3502 15 7 7.8995 -5.3085 4.0423 16 14 8.0320 -3.3904 6.0370 17 1 6.9048 -3.6343 6.9726 18 1 9.2516 -4.0693 6.5436 19 1 8.2840 -1.9305 5.9358 20 6 6.7450 -0.4984 1.6304 21 6 6.9020 0.9694 2.0331 22 6 6.2817 2.0240 1.1145 23 6 7.8009 1.8487 1.1614 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 4.1444 0.4649 1.3579 32 1 4.2907 -1.0448 0.4265 33 1 7.5288 -1.2922 4.0223 34 1 5.9495 -1.8292 4.6434 35 1 8.3469 -5.8742 4.6910 36 1 7.7289 -0.9615 1.5544 37 1 6.2397 -0.5586 0.6666 38 1 6.8921 1.1664 3.1051 39 1 5.7614 1.6723 0.2236 40 1 5.8632 2.9153 1.5822 41 1 8.3819 2.6246 1.6600 42 1 8.2804 1.3817 0.3013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103437541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:55 Heat of formation + Delta-G solvation = -78.656985 kcal Electronic energy + Delta-G solvation = -23999.996818 eV Core-core repulsion = 20494.814751 eV Total energy + Delta-G solvation = -3505.182067 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.52121 -37.44266 -36.86906 -35.86345 -35.31349 -34.72532 -32.58402 -30.74335 -28.33598 -27.48569 -26.27736 -22.99761 -22.49791 -22.37854 -20.92248 -19.00247 -18.48010 -17.50649 -16.98173 -16.64148 -16.30788 -15.90526 -15.29627 -15.15487 -14.89458 -14.57879 -14.06268 -13.90519 -13.61344 -13.40051 -13.11204 -12.70251 -12.62641 -12.54397 -12.29085 -11.89577 -11.82733 -11.75220 -11.73547 -11.70748 -11.61136 -11.58558 -10.99421 -10.89091 -10.61326 -10.45096 -10.28808 -10.16581 -10.05455 -9.60769 -9.40945 -8.60205 -7.92388 -6.09993 -4.09805 -0.07598 2.78052 2.98416 3.27875 3.32951 3.36543 3.40464 3.69481 3.89088 3.93566 4.28738 4.37237 4.38601 4.50162 4.74154 4.76482 4.83238 4.95931 5.02738 5.07848 5.13535 5.22220 5.26333 5.29730 5.31739 5.42996 5.49524 5.65474 5.68388 5.70655 5.79135 5.89281 5.99860 6.24780 6.57232 6.86467 7.15042 7.56155 7.98142 8.40060 8.64603 8.92806 9.49091 11.03198 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.005176 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.300979 B = 5408.133797 C = 6686.173654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.588 4.588 3 C -0.147 4.147 4 S 2.450 3.550 5 O -0.918 6.918 6 O -0.920 6.920 7 C -0.658 4.658 8 C 0.539 3.461 9 O -0.528 6.528 10 N -0.576 5.576 11 C 0.213 3.787 12 C -0.533 4.533 13 H 0.076 0.924 14 C 0.075 3.925 15 N -0.894 5.894 16 Si 0.875 3.125 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.266 1.266 20 C 0.138 3.862 21 C -0.171 4.171 22 C -0.191 4.191 23 C -0.172 4.172 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.137 0.863 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.035 0.965 34 H 0.041 0.959 35 H 0.265 0.735 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.092 18.050 -12.207 22.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.696 4.696 3 C -0.205 4.205 4 S 2.626 3.374 5 O -0.915 6.915 6 O -0.917 6.917 7 C -0.786 4.786 8 C 0.323 3.677 9 O -0.405 6.405 10 N -0.306 5.306 11 C 0.093 3.907 12 C -0.572 4.572 13 H 0.094 0.906 14 C -0.128 4.128 15 N -0.533 5.533 16 Si 0.702 3.298 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.190 1.190 20 C 0.014 3.986 21 C -0.190 4.190 22 C -0.228 4.228 23 C -0.209 4.209 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.155 0.845 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.172 0.828 32 H 0.172 0.828 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.128 0.872 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.784 17.106 -11.029 21.791 hybrid contribution 0.978 0.675 -0.018 1.189 sum -6.806 17.780 -11.047 22.011 Atomic orbital electron populations 1.21614 0.89801 1.03980 1.04568 1.30240 1.07320 1.09889 1.22177 1.21763 1.01535 0.92250 1.04942 1.07656 0.76875 0.76028 0.76841 1.93589 1.82325 1.29397 1.86200 1.93545 1.77596 1.75748 1.44826 1.30914 1.27664 1.11693 1.08323 1.18848 0.83499 0.80384 0.84995 1.90832 1.63751 1.43521 1.42426 1.47721 1.04580 1.52211 1.26061 1.19801 0.92486 0.93855 0.84518 1.21291 1.38718 0.94423 1.02745 0.90569 1.24834 0.95093 0.94616 0.98272 1.69888 1.41213 1.06542 1.35612 0.86869 0.78435 0.79503 0.85019 1.19736 1.20999 1.19047 1.21132 0.97860 0.88867 0.90715 1.22963 1.04741 0.92872 0.98426 1.23116 0.96346 1.01355 1.01986 1.22899 0.92804 1.02685 1.02542 0.90603 0.90133 0.90860 0.84520 0.90274 0.90333 0.91129 0.82790 0.82754 0.94683 0.94133 0.92467 0.88712 0.90939 0.87179 0.88834 0.88818 0.88800 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.19 37.16 0.34 -0.83 16 2 C -0.59 -5.02 3.35 -26.73 -0.09 -5.11 16 3 C -0.15 -0.94 8.90 37.15 0.33 -0.61 16 4 S 2.45 36.06 3.50 -107.50 -0.38 35.68 16 5 O -0.92 -17.60 17.95 -59.52 -1.07 -18.67 16 6 O -0.92 -16.41 17.91 -59.54 -1.07 -17.47 16 7 C -0.66 -8.86 4.23 36.01 0.15 -8.71 16 8 C 0.54 11.07 7.69 -10.98 -0.08 10.98 16 9 O -0.53 -13.51 15.20 2.55 0.04 -13.47 16 10 N -0.58 -11.59 2.46 -175.06 -0.43 -12.02 16 11 C 0.21 5.18 4.23 -5.20 -0.02 5.16 16 12 C -0.53 -15.29 9.94 -34.44 -0.34 -15.64 16 13 H 0.08 2.38 8.06 -52.48 -0.42 1.96 16 14 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 15 N -0.89 -27.64 13.96 55.43 0.77 -26.86 16 16 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 17 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 20 C 0.14 2.03 5.49 -4.04 -0.02 2.01 16 21 C -0.17 -2.06 5.95 -90.62 -0.54 -2.60 16 22 C -0.19 -1.69 9.18 -26.73 -0.25 -1.94 16 23 C -0.17 -1.61 10.25 -26.73 -0.27 -1.88 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.14 0.83 8.14 -51.92 -0.42 0.40 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.33 6.39 -51.93 -0.33 0.00 16 31 H 0.15 1.49 5.47 -51.92 -0.28 1.21 16 32 H 0.15 1.51 7.40 -51.92 -0.38 1.13 16 33 H 0.04 0.80 7.13 -51.92 -0.37 0.43 16 34 H 0.04 1.06 6.85 -51.93 -0.36 0.70 16 35 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 37 H 0.07 0.85 6.17 -51.93 -0.32 0.52 16 38 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.09 0.66 7.87 -51.93 -0.41 0.25 16 40 H 0.09 0.76 8.14 -51.92 -0.42 0.33 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.10 0.83 8.14 -51.94 -0.42 0.40 16 LS Contribution 356.22 15.07 5.37 5.37 Total: -1.00 -39.54 356.22 -9.01 -48.56 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.69 Total: -0.95 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -0.89 Total: -17.08 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.34 Total: -38.88 kcal Atomic # 8 Polarization: -47.52 SS G_CDS: -2.10 Total: -49.61 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Atomic # 16 Polarization: 36.06 SS G_CDS: -0.38 Total: 35.68 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -39.54 -9.01 -48.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.099 kcal (2) G-P(sol) polarization free energy of solvation -39.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds