Wall clock time and date at job start Fri Apr 10 2020 17:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00391 * 2 1 4 4 H 1.48502 * 109.47538 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47530 * 300.00509 * 3 2 1 6 6 H 1.48502 * 109.46964 * 60.00533 * 3 2 1 7 7 C 1.37881 * 119.99545 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99718 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00369 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47520 * 179.97438 * 9 7 2 11 11 C 1.46492 * 120.00006 * 270.00410 * 10 9 7 12 12 C 1.52997 * 109.47390 * 83.88931 * 11 10 9 13 13 C 1.52999 * 117.50109 * 243.74431 * 12 11 10 14 14 C 1.53000 * 117.50069 * 175.08299 * 12 11 10 15 15 C 1.34778 * 119.99386 * 90.00109 * 10 9 7 16 16 O 1.21525 * 120.00256 * 355.21235 * 15 10 9 17 17 C 1.48007 * 119.99582 * 175.21779 * 15 10 9 18 18 C 1.39867 * 120.46558 * 49.39045 * 17 15 10 19 19 C 1.38449 * 118.35798 * 179.97438 * 18 17 15 20 20 C 1.39294 * 119.19106 * 359.97438 * 19 18 17 21 21 C 1.48342 * 119.57261 * 179.97438 * 20 19 18 22 22 N 1.34770 * 120.00084 * 180.02562 * 21 20 19 23 23 O 1.21491 * 119.99695 * 0.02562 * 21 20 19 24 24 N 1.32709 * 120.85730 * 0.02562 * 20 19 18 25 25 C 1.31414 * 121.80188 * 359.71988 * 24 20 19 26 26 H 0.97002 * 119.99445 * 359.97438 * 1 2 3 27 27 H 1.09009 * 109.47021 * 60.00104 * 9 7 2 28 28 H 1.09002 * 109.47310 * 300.00472 * 9 7 2 29 29 H 1.09003 * 109.47075 * 203.88766 * 11 10 9 30 30 H 1.08998 * 109.47319 * 323.88872 * 11 10 9 31 31 H 1.08999 * 115.55042 * 29.41957 * 12 11 10 32 32 H 1.09000 * 117.49932 * 0.02562 * 13 12 11 33 33 H 1.09002 * 117.49989 * 145.01751 * 13 12 11 34 34 H 1.09000 * 117.50379 * 214.97887 * 14 12 11 35 35 H 1.08996 * 117.49690 * 0.02562 * 14 12 11 36 36 H 1.08005 * 120.81867 * 359.97438 * 18 17 15 37 37 H 1.08009 * 120.40081 * 179.97438 * 19 18 17 38 38 H 0.96995 * 120.00290 * 359.97438 * 22 21 20 39 39 H 0.97000 * 120.00034 * 180.02562 * 22 21 20 40 40 H 1.08003 * 119.64292 * 180.26720 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0018 11 6 2.6779 -4.1690 -1.2710 12 6 3.8470 -3.3295 -1.7900 13 6 3.6513 -2.5874 -3.1135 14 6 4.5611 -3.8168 -3.0523 15 6 2.6415 -4.1255 1.1649 16 8 2.3163 -3.6094 2.2160 17 6 3.5195 -5.3171 1.1660 18 6 4.6501 -5.3656 0.3441 19 6 5.4411 -6.5013 0.3802 20 6 5.0876 -7.5488 1.2275 21 6 5.9287 -8.7698 1.2726 22 7 5.5944 -9.7887 2.0888 23 8 6.9191 -8.8513 0.5736 24 7 4.0074 -7.4690 1.9943 25 6 3.2338 -6.4067 1.9926 26 1 -0.4849 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8904 28 1 0.6245 -2.5571 0.8896 29 1 3.0085 -5.1961 -1.1166 30 1 1.8679 -4.1537 -2.0002 31 1 4.4527 -2.8434 -1.0251 32 1 2.6894 -2.6968 -3.6144 33 1 4.1283 -1.6131 -3.2195 34 1 5.6364 -3.6509 -3.1182 35 1 4.1977 -4.7352 -3.5133 36 1 4.8999 -4.5375 -0.3028 37 1 6.3217 -6.5741 -0.2411 38 1 4.8039 -9.7236 2.6472 39 1 6.1446 -10.5870 2.1185 40 1 2.3653 -6.3773 2.6340 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103437658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:57 Heat of formation + Delta-G solvation = -27.729712 kcal Electronic energy + Delta-G solvation = -24540.279582 eV Core-core repulsion = 20934.154687 eV Total energy + Delta-G solvation = -3606.124895 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.05702 -40.75391 -39.53002 -38.46256 -36.12906 -35.05751 -34.62211 -33.55323 -32.63521 -29.79002 -27.95857 -26.58504 -25.13616 -24.32123 -23.13017 -22.33289 -21.99854 -20.53436 -19.31205 -18.68038 -18.46675 -18.23471 -17.38633 -17.10738 -16.47239 -16.24835 -16.22269 -16.12123 -15.61777 -15.31296 -14.93796 -14.66113 -14.55670 -14.22852 -14.17107 -13.67572 -13.56806 -13.30614 -12.95851 -12.71120 -12.57706 -12.25135 -12.22147 -11.64576 -11.59985 -11.30379 -11.14954 -11.12762 -10.76588 -10.70469 -10.63055 -10.58079 -10.31821 -9.55849 -8.19335 -6.29757 -0.77018 0.02618 1.35079 1.36857 1.39735 1.49561 1.82030 2.08711 2.28504 2.41464 2.68113 2.94832 3.08640 3.12412 3.39222 3.67212 3.78169 3.85539 3.91407 4.02502 4.11791 4.20833 4.42034 4.52620 4.59178 4.75883 4.80875 4.89412 4.90510 5.01431 5.14835 5.21414 5.30907 5.33471 5.37453 5.56361 5.77731 5.80995 6.08841 6.20455 6.52285 6.60004 6.77099 7.18123 7.18983 7.40301 8.88824 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.020313 B = 0.003953 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.124956 B = 7081.578231 C = 7848.350077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.010 3.990 3 Si 0.958 3.042 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.285 1.285 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.263 3.737 10 N -0.585 5.585 11 C 0.137 3.863 12 C -0.182 4.182 13 C -0.178 4.178 14 C -0.146 4.146 15 C 0.546 3.454 16 O -0.577 6.577 17 C -0.152 4.152 18 C -0.047 4.047 19 C -0.106 4.106 20 C 0.076 3.924 21 C 0.580 3.420 22 N -0.814 5.814 23 O -0.566 6.566 24 N -0.453 5.453 25 C 0.144 3.856 26 H 0.265 0.735 27 H 0.027 0.973 28 H 0.002 0.998 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.164 0.836 37 H 0.171 0.829 38 H 0.421 0.579 39 H 0.417 0.583 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.324 -17.477 -3.190 20.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.189 4.189 3 Si 0.783 3.217 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.211 1.211 7 C -0.559 4.559 8 H 0.073 0.927 9 C 0.143 3.857 10 N -0.313 5.313 11 C 0.015 3.985 12 C -0.201 4.201 13 C -0.215 4.215 14 C -0.184 4.184 15 C 0.333 3.667 16 O -0.457 6.457 17 C -0.157 4.157 18 C -0.072 4.072 19 C -0.127 4.127 20 C -0.062 4.062 21 C 0.363 3.637 22 N -0.378 5.378 23 O -0.444 6.444 24 N -0.164 5.164 25 C -0.016 4.016 26 H 0.074 0.926 27 H 0.045 0.955 28 H 0.020 0.980 29 H 0.117 0.883 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.181 0.819 37 H 0.188 0.812 38 H 0.253 0.747 39 H 0.250 0.750 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 10.374 -17.727 -2.630 20.707 hybrid contribution -0.187 1.956 0.044 1.965 sum 10.187 -15.771 -2.586 18.952 Atomic orbital electron populations 1.70041 1.07353 1.27778 1.51767 1.25711 0.95637 1.02528 0.94981 0.85509 0.78916 0.79548 0.77702 1.19260 1.19804 1.21142 1.21589 0.93160 0.91304 1.49832 0.92700 1.18837 0.87463 0.83437 0.95997 1.48125 1.43832 1.33716 1.05670 1.21436 0.95942 0.96646 0.84517 1.22607 1.00731 1.04607 0.92176 1.22928 1.01775 0.96918 0.99864 1.23128 0.98933 0.98288 0.98001 1.18597 0.80575 0.83681 0.83843 1.90767 1.59423 1.62824 1.32713 1.21141 0.98105 0.96067 1.00417 1.22280 0.91298 0.98733 0.94932 1.22200 1.00607 0.91630 0.98215 1.21431 0.93669 0.95651 0.95467 1.17828 0.83219 0.82933 0.79765 1.43513 1.32175 1.18727 1.43355 1.90821 1.27951 1.81420 1.44225 1.67590 1.03705 1.25317 1.19766 1.22902 0.97942 0.86528 0.94274 0.92637 0.95506 0.97955 0.88266 0.90142 0.89347 0.89044 0.89836 0.87193 0.86745 0.81864 0.81153 0.74698 0.74983 0.80574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.80 13.29 21.45 0.28 -54.52 16 2 C 0.01 0.56 5.46 84.66 0.46 1.02 16 3 Si 0.96 44.29 29.54 68.60 2.03 46.31 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 7 C -0.52 -28.58 9.09 25.60 0.23 -28.34 16 8 H 0.05 3.00 7.67 -2.91 -0.02 2.98 16 9 C 0.26 13.51 5.16 85.63 0.44 13.95 16 10 N -0.58 -23.52 2.47 -829.41 -2.05 -25.57 16 11 C 0.14 4.05 5.21 86.38 0.45 4.50 16 12 C -0.18 -5.05 3.76 -10.79 -0.04 -5.09 16 13 C -0.18 -4.77 10.18 30.62 0.31 -4.46 16 14 C -0.15 -2.84 10.25 30.62 0.31 -2.52 16 15 C 0.55 21.99 7.25 86.83 0.63 22.62 16 16 O -0.58 -28.93 16.67 -3.79 -0.06 -28.99 16 17 C -0.15 -4.49 4.92 -19.93 -0.10 -4.59 16 18 C -0.05 -1.12 7.68 22.71 0.17 -0.95 16 19 C -0.11 -2.24 9.62 22.57 0.22 -2.02 16 20 C 0.08 1.68 6.75 41.96 0.28 1.96 16 21 C 0.58 11.98 8.09 86.93 0.70 12.69 16 22 N -0.81 -10.52 8.86 -175.27 -1.55 -12.08 16 23 O -0.57 -14.88 17.15 -3.69 -0.06 -14.95 16 24 N -0.45 -10.19 9.52 -183.91 -1.75 -11.94 16 25 C 0.14 3.73 10.89 85.11 0.93 4.65 16 26 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 27 H 0.03 1.40 7.95 -2.38 -0.02 1.38 16 28 H 0.00 0.14 7.49 -2.39 -0.02 0.12 16 29 H 0.10 2.37 5.44 -2.39 -0.01 2.36 16 30 H 0.08 2.33 7.71 -2.39 -0.02 2.31 16 31 H 0.09 2.82 7.29 -2.39 -0.02 2.80 16 32 H 0.09 2.48 8.03 -2.39 -0.02 2.46 16 33 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.16 3.77 4.55 -2.91 -0.01 3.76 16 37 H 0.17 3.03 7.63 -2.91 -0.02 3.01 16 38 H 0.42 4.38 8.15 -92.71 -0.76 3.63 16 39 H 0.42 3.63 8.93 -92.71 -0.83 2.80 16 40 H 0.18 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -73.14 344.75 1.37 -71.77 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -0.48 Total: 16.54 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 5.01 Total: 13.42 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -5.06 Total: -104.10 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -0.13 Total: -43.94 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -73.14 1.37 -71.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.043 kcal (2) G-P(sol) polarization free energy of solvation -73.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds