Wall clock time and date at job start Fri Apr 10 2020 17:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46889 * 2 1 4 4 C 1.53003 * 109.46942 * 119.99275 * 2 1 3 5 5 S 1.81400 * 109.47029 * 295.00352 * 4 2 1 6 6 C 1.81401 * 101.92033 * 179.97438 * 5 4 2 7 7 O 1.42098 * 108.57989 * 294.48449 * 5 4 2 8 8 O 1.42100 * 108.58260 * 65.51422 * 5 4 2 9 9 C 1.50692 * 109.47366 * 239.99240 * 2 1 3 10 10 O 1.21285 * 120.00449 * 256.03779 * 9 2 1 11 11 N 1.34786 * 119.99748 * 76.03909 * 9 2 1 12 12 C 1.37101 * 119.99438 * 184.22952 * 11 9 2 13 13 H 1.08004 * 119.99390 * 224.97433 * 12 11 9 14 14 C 1.38952 * 120.00083 * 44.98547 * 12 11 9 15 15 N 1.31404 * 120.00441 * 16.75682 * 14 12 11 16 16 Si 1.86800 * 119.99597 * 196.76646 * 14 12 11 17 17 H 1.48499 * 109.47320 * 59.99485 * 16 14 12 18 18 H 1.48497 * 109.47101 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47199 * 299.99603 * 16 14 12 20 20 C 1.46496 * 120.00111 * 4.22966 * 11 9 2 21 21 C 1.55237 * 110.58049 * 229.16857 * 20 11 9 22 22 C 1.54887 * 102.58438 * 203.33955 * 21 20 11 23 23 C 1.54262 * 104.31587 * 37.93367 * 22 21 20 24 24 C 1.53875 * 106.59758 * 336.32106 * 23 22 21 25 25 H 1.09000 * 109.46775 * 187.38989 * 1 2 3 26 26 H 1.08994 * 109.47452 * 307.39116 * 1 2 3 27 27 H 1.09004 * 109.46785 * 67.39603 * 1 2 3 28 28 H 1.09005 * 109.46789 * 54.99763 * 4 2 1 29 29 H 1.09001 * 109.47141 * 175.00222 * 4 2 1 30 30 H 1.09003 * 109.47276 * 60.00015 * 6 5 4 31 31 H 1.09002 * 109.47246 * 180.02562 * 6 5 4 32 32 H 1.09007 * 109.47170 * 299.99977 * 6 5 4 33 33 H 0.96997 * 120.00510 * 180.02562 * 15 14 12 34 34 H 1.09001 * 110.43241 * 351.75793 * 20 11 9 35 35 H 1.08998 * 110.89738 * 85.05074 * 21 20 11 36 36 H 1.08993 * 110.76626 * 321.56676 * 21 20 11 37 37 H 1.08999 * 110.48783 * 279.18479 * 22 21 20 38 38 H 1.08997 * 110.48536 * 156.67971 * 22 21 20 39 39 H 1.08999 * 110.03359 * 95.60482 * 23 22 21 40 40 H 1.09007 * 110.03421 * 216.98837 * 23 22 21 41 41 H 1.08997 * 110.03051 * 119.28666 * 24 23 22 42 42 H 1.09004 * 110.03346 * 240.66880 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 16 1.5600 0.2159 2.7266 6 6 2.2536 -0.8024 4.0580 7 8 2.2380 1.4646 2.7109 8 8 0.1432 0.1970 2.8343 9 6 2.0324 -0.7105 -1.2303 10 8 2.4735 -1.8369 -1.1425 11 7 1.9915 -0.0942 -2.4283 12 6 2.3672 -0.7706 -3.5602 13 1 3.0102 -0.2941 -4.2854 14 6 1.9205 -2.0688 -3.7742 15 7 0.8988 -2.5333 -3.0907 16 14 2.7726 -3.1539 -5.0336 17 1 4.1991 -3.3227 -4.6572 18 1 2.1104 -4.4825 -5.0710 19 1 2.6859 -2.5192 -6.3733 20 6 1.5458 1.2982 -2.5209 21 6 0.4774 1.4561 -3.6361 22 6 0.5854 2.9586 -3.9965 23 6 2.0954 3.2631 -3.9140 24 6 2.7061 2.2074 -2.9758 25 1 -0.3633 -1.0191 0.1322 26 1 -0.3634 0.6240 0.8164 27 1 -0.3633 0.3950 -0.9488 28 1 1.6053 -1.7197 1.2954 29 1 3.1263 -0.7993 1.2058 30 1 3.3337 -0.8786 3.9321 31 1 2.0313 -0.3422 5.0208 32 1 1.8124 -1.7984 4.0212 33 1 0.5873 -3.4397 -3.2398 34 1 1.1498 1.6355 -1.5630 35 1 -0.5172 1.2201 -3.2578 36 1 0.7223 0.8339 -4.4968 37 1 0.0342 3.5641 -3.2770 38 1 0.2150 3.1362 -5.0061 39 1 2.5460 3.1884 -4.9037 40 1 2.2532 4.2618 -3.5066 41 1 3.4530 1.6204 -3.5101 42 1 3.1610 2.6934 -2.1126 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176876696.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:27 Heat of formation + Delta-G solvation = -105.566458 kcal Electronic energy + Delta-G solvation = -24628.895393 eV Core-core repulsion = 21122.546444 eV Total energy + Delta-G solvation = -3506.348949 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.134 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -39.10591 -36.93586 -36.83575 -35.92757 -34.14018 -33.23370 -31.38037 -29.74684 -28.07303 -27.17167 -26.77024 -25.17143 -22.43181 -19.97598 -19.75529 -19.08260 -18.65285 -17.17181 -16.11257 -16.06850 -15.85163 -15.59612 -15.02008 -14.72890 -14.30604 -13.86541 -13.62872 -13.28082 -13.25545 -13.15738 -12.72663 -12.42822 -12.39000 -12.16688 -11.86145 -11.56976 -11.47332 -11.21202 -11.05669 -10.95827 -10.87274 -10.76630 -10.67980 -10.58387 -10.49199 -10.45270 -10.24226 -10.16299 -9.96087 -9.70393 -8.69377 -8.04978 -7.08290 -6.11736 -3.85930 0.09060 2.85169 3.29834 3.36413 3.39886 3.68910 4.09288 4.13460 4.35342 4.71997 4.78855 4.84551 4.98769 5.17100 5.19261 5.26021 5.35606 5.43235 5.55275 5.60813 5.86964 5.92742 5.97138 6.05675 6.08295 6.15109 6.20811 6.28041 6.33458 6.41344 6.44152 6.51618 6.61163 6.77681 6.87467 6.95961 7.19023 7.64154 8.29198 9.08429 9.17437 9.66880 10.29103 10.97700 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.014157 B = 0.005892 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.317795 B = 4750.981615 C = 6046.134879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.098 4.098 3 H 0.088 0.912 4 C -0.574 4.574 5 S 2.412 3.588 6 C -0.659 4.659 7 O -0.946 6.946 8 O -0.939 6.939 9 C 0.497 3.503 10 O -0.539 6.539 11 N -0.444 5.444 12 C -0.338 4.338 13 H 0.076 0.924 14 C 0.072 3.928 15 N -0.836 5.836 16 Si 0.909 3.091 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.122 3.878 21 C -0.119 4.119 22 C -0.126 4.126 23 C -0.118 4.118 24 C -0.136 4.136 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.139 0.861 29 H 0.132 0.868 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.263 0.737 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.463 6.664 7.853 10.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.121 4.121 3 H 0.107 0.893 4 C -0.704 4.704 5 S 2.595 3.405 6 C -0.808 4.808 7 O -0.943 6.943 8 O -0.936 6.936 9 C 0.282 3.718 10 O -0.417 6.417 11 N -0.165 5.165 12 C -0.465 4.465 13 H 0.094 0.906 14 C -0.138 4.138 15 N -0.470 5.470 16 Si 0.736 3.264 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.204 1.204 20 C 0.017 3.983 21 C -0.157 4.157 22 C -0.164 4.164 23 C -0.156 4.156 24 C -0.175 4.175 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.157 0.843 29 H 0.150 0.850 30 H 0.146 0.854 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.098 6.692 8.028 10.452 hybrid contribution 0.819 -1.403 -0.595 1.730 sum 0.916 5.290 7.433 9.169 Atomic orbital electron populations 1.22108 0.92485 1.03956 1.03335 1.21017 0.97901 0.99509 0.93640 0.89349 1.30062 1.12051 1.14137 1.14176 1.08062 0.76179 0.77401 0.78817 1.30284 1.13951 1.16917 1.19652 1.93574 1.76337 1.38245 1.86159 1.93578 1.27389 1.86983 1.85656 1.19424 0.82135 0.87240 0.82955 1.90485 1.47611 1.18774 1.84856 1.43188 1.59046 1.09054 1.05247 1.18752 1.30222 0.97571 0.99954 0.90596 1.25212 0.93846 0.98381 0.96373 1.69820 1.21220 1.16447 1.39525 0.86338 0.80094 0.79485 0.80445 1.20131 1.21334 1.20386 1.22097 0.93392 0.85001 0.97813 1.22730 0.98181 0.94489 1.00314 1.22331 0.95989 0.97496 1.00544 1.22036 0.95912 0.98089 0.99528 1.22500 0.99307 0.96835 0.98834 0.91186 0.91173 0.90932 0.84268 0.84951 0.85435 0.85681 0.85305 0.92666 0.90881 0.92425 0.89369 0.92395 0.92363 0.92323 0.92745 0.90675 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 8.18 37.16 0.30 -2.65 16 2 C -0.10 -1.84 1.85 -91.77 -0.17 -2.01 16 3 H 0.09 1.53 6.84 -51.93 -0.35 1.17 16 4 C -0.57 -8.67 4.59 37.16 0.17 -8.50 16 5 S 2.41 30.36 5.15 -107.50 -0.55 29.81 16 6 C -0.66 -5.48 10.62 101.05 1.07 -4.41 16 7 O -0.95 -14.72 18.10 -57.83 -1.05 -15.77 16 8 O -0.94 -14.41 15.61 -57.83 -0.90 -15.31 16 9 C 0.50 12.03 6.05 -10.99 -0.07 11.96 16 10 O -0.54 -15.03 14.12 5.55 0.08 -14.95 16 11 N -0.44 -10.62 2.53 -105.78 -0.27 -10.89 16 12 C -0.34 -8.87 7.27 -14.93 -0.11 -8.98 16 13 H 0.08 1.95 7.12 -52.48 -0.37 1.57 16 14 C 0.07 1.95 4.44 -17.47 -0.08 1.88 16 15 N -0.84 -23.83 11.85 55.50 0.66 -23.17 16 16 Si 0.91 21.50 29.58 -169.99 -5.03 16.47 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 C 0.12 2.38 2.41 -66.09 -0.16 2.22 16 21 C -0.12 -2.20 6.39 -24.55 -0.16 -2.35 16 22 C -0.13 -1.84 6.82 -25.08 -0.17 -2.02 16 23 C -0.12 -1.71 6.80 -25.61 -0.17 -1.89 16 24 C -0.14 -2.35 6.44 -25.61 -0.16 -2.51 16 25 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16 26 H 0.07 1.15 5.92 -51.93 -0.31 0.84 16 27 H 0.07 1.36 6.82 -51.93 -0.35 1.01 16 28 H 0.14 2.06 8.08 -51.92 -0.42 1.64 16 29 H 0.13 1.83 8.14 -51.92 -0.42 1.41 16 30 H 0.13 0.86 8.14 -51.92 -0.42 0.44 16 31 H 0.12 0.88 8.14 -51.92 -0.42 0.46 16 32 H 0.13 0.89 8.14 -51.92 -0.42 0.46 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.07 1.32 4.85 -51.93 -0.25 1.07 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.85 6.99 -51.93 -0.36 1.49 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 41 H 0.07 1.43 6.87 -51.93 -0.36 1.07 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 341.46 15.07 5.15 5.15 Total: -1.00 -35.30 341.46 -8.18 -43.49 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.57 Total: 4.42 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 0.30 Total: -19.25 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.39 Total: -34.06 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -1.87 Total: -46.03 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Atomic # 16 Polarization: 30.36 SS G_CDS: -0.55 Total: 29.81 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.30 -8.18 -43.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176876696.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.077 kcal (2) G-P(sol) polarization free energy of solvation -35.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds