Wall clock time and date at job start Fri Apr 10 2020 17:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46889 * 2 1 4 4 C 1.53003 * 109.46942 * 119.99275 * 2 1 3 5 5 S 1.81400 * 109.47029 * 295.00352 * 4 2 1 6 6 C 1.81401 * 101.92033 * 179.97438 * 5 4 2 7 7 O 1.42098 * 108.57989 * 294.48449 * 5 4 2 8 8 O 1.42100 * 108.58260 * 65.51422 * 5 4 2 9 9 C 1.50692 * 109.47366 * 239.99240 * 2 1 3 10 10 O 1.21285 * 120.00449 * 256.03779 * 9 2 1 11 11 N 1.34786 * 119.99748 * 76.03909 * 9 2 1 12 12 C 1.37101 * 119.99438 * 184.22952 * 11 9 2 13 13 H 1.08004 * 119.99390 * 224.97433 * 12 11 9 14 14 C 1.38952 * 120.00083 * 44.98547 * 12 11 9 15 15 N 1.31404 * 120.00441 * 16.75682 * 14 12 11 16 16 Si 1.86800 * 119.99597 * 196.76646 * 14 12 11 17 17 H 1.48499 * 109.47320 * 59.99485 * 16 14 12 18 18 H 1.48497 * 109.47101 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47199 * 299.99603 * 16 14 12 20 20 C 1.46496 * 120.00111 * 4.22966 * 11 9 2 21 21 C 1.55237 * 110.58049 * 229.16857 * 20 11 9 22 22 C 1.54887 * 102.58438 * 203.33955 * 21 20 11 23 23 C 1.54262 * 104.31587 * 37.93367 * 22 21 20 24 24 C 1.53875 * 106.59758 * 336.32106 * 23 22 21 25 25 H 1.09000 * 109.46775 * 187.38989 * 1 2 3 26 26 H 1.08994 * 109.47452 * 307.39116 * 1 2 3 27 27 H 1.09004 * 109.46785 * 67.39603 * 1 2 3 28 28 H 1.09005 * 109.46789 * 54.99763 * 4 2 1 29 29 H 1.09001 * 109.47141 * 175.00222 * 4 2 1 30 30 H 1.09003 * 109.47276 * 60.00015 * 6 5 4 31 31 H 1.09002 * 109.47246 * 180.02562 * 6 5 4 32 32 H 1.09007 * 109.47170 * 299.99977 * 6 5 4 33 33 H 0.96997 * 120.00510 * 180.02562 * 15 14 12 34 34 H 1.09001 * 110.43241 * 351.75793 * 20 11 9 35 35 H 1.08998 * 110.89738 * 85.05074 * 21 20 11 36 36 H 1.08993 * 110.76626 * 321.56676 * 21 20 11 37 37 H 1.08999 * 110.48783 * 279.18479 * 22 21 20 38 38 H 1.08997 * 110.48536 * 156.67971 * 22 21 20 39 39 H 1.08999 * 110.03359 * 95.60482 * 23 22 21 40 40 H 1.09007 * 110.03421 * 216.98837 * 23 22 21 41 41 H 1.08997 * 110.03051 * 119.28666 * 24 23 22 42 42 H 1.09004 * 110.03346 * 240.66880 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 16 1.5600 0.2159 2.7266 6 6 2.2536 -0.8024 4.0580 7 8 2.2380 1.4646 2.7109 8 8 0.1432 0.1970 2.8343 9 6 2.0324 -0.7105 -1.2303 10 8 2.4735 -1.8369 -1.1425 11 7 1.9915 -0.0942 -2.4283 12 6 2.3672 -0.7706 -3.5602 13 1 3.0102 -0.2941 -4.2854 14 6 1.9205 -2.0688 -3.7742 15 7 0.8988 -2.5333 -3.0907 16 14 2.7726 -3.1539 -5.0336 17 1 4.1991 -3.3227 -4.6572 18 1 2.1104 -4.4825 -5.0710 19 1 2.6859 -2.5192 -6.3733 20 6 1.5458 1.2982 -2.5209 21 6 0.4774 1.4561 -3.6361 22 6 0.5854 2.9586 -3.9965 23 6 2.0954 3.2631 -3.9140 24 6 2.7061 2.2074 -2.9758 25 1 -0.3633 -1.0191 0.1322 26 1 -0.3634 0.6240 0.8164 27 1 -0.3633 0.3950 -0.9488 28 1 1.6053 -1.7197 1.2954 29 1 3.1263 -0.7993 1.2058 30 1 3.3337 -0.8786 3.9321 31 1 2.0313 -0.3422 5.0208 32 1 1.8124 -1.7984 4.0212 33 1 0.5873 -3.4397 -3.2398 34 1 1.1498 1.6355 -1.5630 35 1 -0.5172 1.2201 -3.2578 36 1 0.7223 0.8339 -4.4968 37 1 0.0342 3.5641 -3.2770 38 1 0.2150 3.1362 -5.0061 39 1 2.5460 3.1884 -4.9037 40 1 2.2532 4.2618 -3.5066 41 1 3.4530 1.6204 -3.5101 42 1 3.1610 2.6934 -2.1126 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176876696.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:26 Heat of formation + Delta-G solvation = -130.715262 kcal Electronic energy + Delta-G solvation = -24629.985927 eV Core-core repulsion = 21122.546444 eV Total energy + Delta-G solvation = -3507.439483 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.82364 -38.45796 -37.96328 -37.06196 -35.76019 -35.01729 -33.28818 -30.51500 -29.45208 -28.55097 -28.22916 -27.04326 -24.10230 -21.50790 -21.08173 -20.78083 -19.75975 -18.61985 -17.82972 -17.23366 -17.12015 -16.94786 -16.54045 -16.27530 -15.87711 -15.53893 -15.03756 -14.85308 -14.17691 -14.07473 -13.94888 -13.91905 -13.77959 -13.57960 -13.32377 -12.99532 -12.94198 -12.78263 -12.68609 -12.58200 -12.37317 -12.29010 -12.13361 -12.04215 -11.96655 -11.92990 -11.79320 -11.42588 -11.32915 -11.15345 -10.69205 -9.94557 -9.02065 -8.17490 -5.93662 -0.90061 1.36974 1.44014 1.47718 1.87512 2.25226 2.45533 2.68205 3.14597 3.18173 3.26684 3.54961 3.84259 3.87131 3.92395 3.99746 4.13102 4.23156 4.24828 4.34540 4.51959 4.58717 4.68209 4.71791 4.79391 4.82751 4.87433 4.95857 4.97154 5.07175 5.11349 5.20109 5.26260 5.31167 5.46136 5.56479 5.57621 5.66467 6.25859 7.09031 7.23941 7.74299 8.38191 8.91291 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.014157 B = 0.005892 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.317795 B = 4750.981615 C = 6046.134879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.097 4.097 3 H 0.103 0.897 4 C -0.589 4.589 5 S 2.434 3.566 6 C -0.634 4.634 7 O -0.976 6.976 8 O -0.969 6.969 9 C 0.482 3.518 10 O -0.587 6.587 11 N -0.457 5.457 12 C -0.342 4.342 13 H 0.075 0.925 14 C 0.023 3.977 15 N -0.870 5.870 16 Si 0.963 3.037 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.260 1.260 20 C 0.111 3.889 21 C -0.119 4.119 22 C -0.114 4.114 23 C -0.111 4.111 24 C -0.134 4.134 25 H 0.053 0.947 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.151 0.849 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.257 0.743 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.050 0.950 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.960 8.290 9.246 12.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.120 4.120 3 H 0.121 0.879 4 C -0.717 4.717 5 S 2.619 3.381 6 C -0.788 4.788 7 O -0.973 6.973 8 O -0.966 6.966 9 C 0.269 3.731 10 O -0.468 6.468 11 N -0.178 5.178 12 C -0.470 4.470 13 H 0.092 0.908 14 C -0.183 4.183 15 N -0.506 5.506 16 Si 0.789 3.211 17 H -0.209 1.209 18 H -0.215 1.215 19 H -0.185 1.185 20 C 0.007 3.993 21 C -0.158 4.158 22 C -0.152 4.152 23 C -0.149 4.149 24 C -0.172 4.172 25 H 0.072 0.928 26 H 0.110 0.890 27 H 0.080 0.920 28 H 0.154 0.846 29 H 0.158 0.842 30 H 0.170 0.830 31 H 0.168 0.832 32 H 0.168 0.832 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.068 0.932 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.578 8.379 9.330 12.554 hybrid contribution 0.711 -1.888 -0.928 2.220 sum 1.289 6.491 8.403 10.696 Atomic orbital electron populations 1.22052 0.92245 1.03330 1.03552 1.20966 0.98016 1.00080 0.92907 0.87867 1.30235 1.12561 1.14322 1.14566 1.07286 0.75240 0.76944 0.78608 1.30066 1.15168 1.16520 1.17005 1.93533 1.76625 1.40509 1.86630 1.93533 1.29610 1.87500 1.85953 1.20329 0.81269 0.87005 0.84462 1.90432 1.49588 1.20888 1.85936 1.43458 1.58828 1.10630 1.04841 1.18948 1.29632 0.97920 1.00514 0.90784 1.25956 0.94425 0.99695 0.98235 1.69936 1.22789 1.16240 1.41609 0.85479 0.78376 0.77911 0.79310 1.20877 1.21498 1.18459 1.22397 0.94821 0.83004 0.99048 1.22657 0.97332 0.97155 0.98616 1.22297 0.96566 0.94331 1.02040 1.22024 0.95300 0.98444 0.99134 1.22466 0.97955 0.96952 0.99854 0.92770 0.88969 0.92022 0.84612 0.84195 0.83050 0.83237 0.83195 0.93372 0.89478 0.93181 0.92607 0.90235 0.90858 0.91999 0.89801 0.93162 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.73 8.18 71.98 0.59 -5.15 16 2 C -0.10 -3.71 1.85 -11.54 -0.02 -3.73 16 3 H 0.10 3.54 6.84 -2.38 -0.02 3.52 16 4 C -0.59 -17.62 4.59 71.98 0.33 -17.29 16 5 S 2.43 56.55 5.15 -56.49 -0.29 56.26 16 6 C -0.63 -7.82 10.62 113.37 1.20 -6.61 16 7 O -0.98 -28.55 18.10 -127.37 -2.31 -30.85 16 8 O -0.97 -28.28 15.61 -127.37 -1.99 -30.26 16 9 C 0.48 24.08 6.05 87.65 0.53 24.61 16 10 O -0.59 -34.06 14.12 -3.05 -0.04 -34.11 16 11 N -0.46 -22.53 2.53 -606.95 -1.53 -24.06 16 12 C -0.34 -18.60 7.27 84.04 0.61 -17.99 16 13 H 0.07 3.94 7.12 -2.91 -0.02 3.91 16 14 C 0.02 1.28 4.44 84.93 0.38 1.65 16 15 N -0.87 -51.75 11.85 21.66 0.26 -51.49 16 16 Si 0.96 45.44 29.58 68.60 2.03 47.47 16 17 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 18 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 19 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 20 C 0.11 4.36 2.41 46.19 0.11 4.47 16 21 C -0.12 -4.43 6.39 32.01 0.20 -4.23 16 22 C -0.11 -3.10 6.82 31.67 0.22 -2.88 16 23 C -0.11 -2.95 6.80 31.32 0.21 -2.73 16 24 C -0.13 -4.49 6.44 31.32 0.20 -4.29 16 25 H 0.05 2.15 8.13 -2.39 -0.02 2.13 16 26 H 0.09 2.99 5.92 -2.39 -0.01 2.98 16 27 H 0.06 2.37 6.82 -2.38 -0.02 2.36 16 28 H 0.14 4.08 8.08 -2.39 -0.02 4.06 16 29 H 0.14 3.85 8.14 -2.39 -0.02 3.83 16 30 H 0.15 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.15 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.15 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 34 H 0.09 3.12 4.85 -2.39 -0.01 3.11 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.06 2.42 6.99 -2.39 -0.02 2.40 16 37 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 41 H 0.05 1.92 6.87 -2.39 -0.02 1.91 16 42 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -80.04 341.46 1.70 -78.34 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 1.01 Total: 22.87 kcal Atomic # 6 Polarization: -38.73 SS G_CDS: 4.57 Total: -34.17 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -1.28 Total: -75.55 kcal Atomic # 8 Polarization: -90.89 SS G_CDS: -4.34 Total: -95.22 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 16 Polarization: 56.55 SS G_CDS: -0.29 Total: 56.26 kcal Total: -80.04 1.70 -78.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176876696.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.374 kcal (2) G-P(sol) polarization free energy of solvation -80.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds