Wall clock time and date at job start Fri Apr 10 2020 17:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99969 * 2 1 4 4 H 1.48502 * 109.47356 * 240.00369 * 3 2 1 5 5 H 1.48507 * 109.46965 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47357 * 120.00085 * 3 2 1 7 7 C 1.37875 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00118 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46993 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47014 * 179.97438 * 10 9 7 12 12 C 1.34775 * 119.99884 * 179.97438 * 11 10 9 13 13 O 1.21583 * 120.00045 * 0.02562 * 12 11 10 14 14 N 1.34771 * 119.99838 * 179.97438 * 12 11 10 15 15 C 1.46498 * 119.99956 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47373 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.47539 * 180.02562 * 16 15 14 18 18 H 1.09009 * 110.84538 * 308.42210 * 17 16 15 19 19 C 1.55049 * 110.79264 * 185.00113 * 17 16 15 20 20 C 1.53871 * 106.66366 * 199.31785 * 19 17 16 21 21 C 1.54171 * 108.70600 * 47.15447 * 20 19 17 22 22 S 1.82916 * 105.08320 * 332.09201 * 21 20 19 23 23 O 1.42097 * 109.35218 * 115.52570 * 22 21 20 24 24 O 1.42106 * 109.35058 * 248.59162 * 22 21 20 25 25 H 0.96997 * 120.00317 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46970 * 60.00452 * 9 7 2 27 27 H 1.09001 * 109.47460 * 299.99944 * 9 7 2 28 28 H 1.09000 * 109.47281 * 59.99994 * 10 9 7 29 29 H 1.08998 * 109.47348 * 299.99909 * 10 9 7 30 30 H 0.96995 * 119.99688 * 0.02562 * 11 10 9 31 31 H 0.96996 * 120.00316 * 0.02562 * 14 12 11 32 32 H 1.09000 * 109.47771 * 60.00074 * 15 14 12 33 33 H 1.09002 * 109.47083 * 300.00039 * 15 14 12 34 34 H 1.08999 * 109.47363 * 59.99427 * 16 15 14 35 35 H 1.09002 * 109.46770 * 299.99891 * 16 15 14 36 36 H 1.09002 * 110.03068 * 80.00092 * 19 17 16 37 37 H 1.09000 * 110.02356 * 318.63433 * 19 17 16 38 38 H 1.09005 * 109.64992 * 167.00401 * 20 19 17 39 39 H 1.09005 * 109.65019 * 287.30029 * 20 19 17 40 40 H 1.08994 * 110.31672 * 90.99485 * 21 20 19 41 41 H 1.09000 * 110.32011 * 213.18782 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5129 -4.9308 0.0001 12 6 2.1869 -6.0980 -0.0003 13 8 3.4027 -6.0979 -0.0007 14 7 1.5130 -7.2651 0.0008 15 6 2.2455 -8.5338 0.0009 16 6 1.2514 -9.6968 0.0016 17 6 2.0164 -11.0218 0.0023 18 1 2.7586 -11.0416 -0.7958 19 6 1.0410 -12.2205 -0.1233 20 6 1.8030 -13.4629 0.3703 21 6 2.4967 -13.1201 1.7037 22 16 2.8045 -11.3185 1.6307 23 8 2.0483 -10.6701 2.6440 24 8 4.2024 -11.0833 1.5309 25 1 -0.4850 0.8400 -0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8721 -3.6043 0.8894 29 1 2.8721 -3.6043 -0.8905 30 1 0.5430 -4.9308 0.0000 31 1 0.5431 -7.2652 0.0015 32 1 2.8729 -8.5912 0.8904 33 1 2.8716 -8.5920 -0.8895 34 1 0.6243 -9.6393 -0.8882 35 1 0.6251 -9.6388 0.8918 36 1 0.7448 -12.3533 -1.1639 37 1 0.1605 -12.0518 0.4966 38 1 1.1039 -14.2854 0.5218 39 1 2.5509 -13.7517 -0.3683 40 1 1.8431 -13.3587 2.5426 41 1 3.4385 -13.6618 1.7906 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883605772.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:49 Heat of formation + Delta-G solvation = -119.000238 kcal Electronic energy + Delta-G solvation = -22371.010535 eV Core-core repulsion = 18798.653142 eV Total energy + Delta-G solvation = -3572.357393 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.59119 -37.73245 -37.25208 -36.39443 -35.49675 -34.58164 -32.91910 -32.37682 -29.63836 -28.16603 -25.57960 -24.40626 -22.43730 -21.99154 -20.99133 -20.51206 -19.10589 -17.99846 -17.67974 -16.90912 -16.34006 -16.08950 -15.85441 -15.51308 -15.03583 -14.57091 -14.50314 -14.38570 -14.15171 -14.03021 -13.48614 -13.15487 -12.94570 -12.61281 -12.45613 -12.38808 -12.32892 -12.23354 -11.86936 -11.67118 -11.55655 -11.15584 -11.05026 -10.97973 -10.61715 -10.47937 -10.26926 -9.92441 -9.52084 -9.24021 -9.03865 -8.44929 -8.21324 -6.05742 -4.08183 -0.39533 2.12275 2.94158 3.16030 3.34547 3.37823 3.41806 3.53344 3.62259 3.78959 3.99317 4.03376 4.19875 4.35365 4.42851 4.54454 4.66498 4.73935 4.83463 4.96721 5.03378 5.17890 5.25048 5.26744 5.31276 5.35527 5.61047 5.71896 6.33638 6.44784 6.55680 6.82376 7.04104 7.24751 7.60468 7.67513 7.93570 8.29616 8.46446 8.96227 9.03028 9.56299 11.05930 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.042304 B = 0.002171 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.713031 B =12894.965019 C =13140.915930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.139 3.861 11 N -0.737 5.737 12 C 0.698 3.302 13 O -0.595 6.595 14 N -0.751 5.751 15 C 0.127 3.873 16 C -0.113 4.113 17 C -0.545 4.545 18 H 0.149 0.851 19 C -0.118 4.118 20 C -0.115 4.115 21 C -0.600 4.600 22 S 2.377 3.623 23 O -0.926 6.926 24 O -0.931 6.931 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.393 0.607 31 H 0.396 0.604 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.137 0.863 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.169 -31.740 -0.796 31.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.017 3.983 11 N -0.391 5.391 12 C 0.397 3.603 13 O -0.474 6.474 14 N -0.409 5.409 15 C 0.002 3.998 16 C -0.151 4.151 17 C -0.655 4.655 18 H 0.166 0.834 19 C -0.156 4.156 20 C -0.153 4.153 21 C -0.729 4.729 22 S 2.559 3.441 23 O -0.923 6.923 24 O -0.928 6.928 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.226 0.774 31 H 0.230 0.770 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.155 0.845 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.704 -30.966 -0.147 30.974 hybrid contribution -0.838 0.279 -0.510 1.020 sum -1.542 -30.687 -0.657 30.733 Atomic orbital electron populations 1.69945 1.06083 1.26936 1.50457 1.24997 0.94903 0.99401 0.95034 0.86560 0.79491 0.82607 0.78792 1.20124 1.21295 1.20094 1.21024 0.93262 0.90376 1.51267 0.92248 1.19321 0.94251 0.91054 0.97798 1.21610 0.95664 0.80351 1.00722 1.45517 1.09853 1.05258 1.78477 1.16056 0.85665 0.80475 0.78089 1.90904 1.11743 1.86606 1.58122 1.44951 1.09440 1.04395 1.82088 1.21225 0.94074 0.81829 1.02667 1.21523 0.98421 0.89501 1.05674 1.30404 1.10489 1.01924 1.22717 0.83352 1.22332 0.97721 0.90249 1.05319 1.21906 1.00508 0.99311 0.93606 1.30574 1.10838 1.25326 1.06202 1.09664 0.76308 0.79170 0.78933 1.93637 1.72715 1.72104 1.53852 1.93649 1.29000 1.83711 1.86448 0.92834 0.95980 0.95945 0.92714 0.92747 0.77350 0.76996 0.92277 0.90762 0.88650 0.88825 0.88084 0.89197 0.88880 0.89608 0.84516 0.84445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.19 16 10 C 0.14 3.10 5.61 -4.04 -0.02 3.07 16 11 N -0.74 -13.56 5.56 -65.22 -0.36 -13.92 16 12 C 0.70 12.91 8.57 -86.92 -0.74 12.17 16 13 O -0.60 -13.60 16.34 5.29 0.09 -13.52 16 14 N -0.75 -9.94 5.56 -65.23 -0.36 -10.30 16 15 C 0.13 1.49 5.58 -4.04 -0.02 1.47 16 16 C -0.11 -0.77 4.71 -26.73 -0.13 -0.90 16 17 C -0.55 -2.85 3.14 -25.65 -0.08 -2.93 16 18 H 0.15 0.58 8.14 -51.92 -0.42 0.16 16 19 C -0.12 -0.29 5.90 -25.19 -0.15 -0.44 16 20 C -0.11 -0.25 6.40 -25.67 -0.16 -0.41 16 21 C -0.60 -2.27 7.26 37.77 0.27 -1.99 16 22 S 2.38 19.23 5.15 -107.50 -0.55 18.68 16 23 O -0.93 -10.79 17.16 -57.73 -0.99 -11.78 16 24 O -0.93 -11.52 18.15 -57.73 -1.05 -12.57 16 25 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.39 6.11 8.49 -40.82 -0.35 5.76 16 31 H 0.40 3.85 8.49 -40.82 -0.35 3.50 16 32 H 0.06 0.81 7.57 -51.93 -0.39 0.42 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.63 7.47 -51.93 -0.39 0.24 16 36 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 37 H 0.09 0.17 8.08 -51.93 -0.42 -0.25 16 38 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 39 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 40 H 0.14 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.14 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 352.75 15.07 5.32 5.32 Total: -1.00 -39.32 352.75 -10.30 -49.61 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.51 Total: 0.72 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -1.59 Total: -3.23 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.01 Total: -49.91 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -1.95 Total: -37.87 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 19.23 SS G_CDS: -0.55 Total: 18.68 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -39.32 -10.30 -49.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883605772.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.389 kcal (2) G-P(sol) polarization free energy of solvation -39.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds