Wall clock time and date at job start Fri Apr 10 2020 17:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99498 * 2 1 4 4 H 1.48498 * 109.47140 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47083 * 300.00226 * 3 2 1 6 6 H 1.48494 * 109.47204 * 60.00021 * 3 2 1 7 7 C 1.37873 * 120.00572 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00130 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99779 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47054 * 179.97438 * 9 7 2 11 11 C 1.46902 * 111.00106 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47222 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.46969 * 304.99913 * 12 11 10 14 14 O 1.42900 * 109.46891 * 65.00202 * 12 11 10 15 15 C 1.53000 * 109.47044 * 184.99864 * 12 11 10 16 16 N 1.46503 * 109.47142 * 179.97438 * 15 12 11 17 17 C 1.34526 * 124.46451 * 269.97988 * 16 15 12 18 18 O 1.21448 * 125.70569 * 0.02562 * 17 16 15 19 19 C 1.47812 * 108.58074 * 179.80134 * 17 16 15 20 20 C 1.38563 * 134.29583 * 179.46509 * 19 17 16 21 21 C 1.38614 * 119.71631 * 180.41241 * 20 19 17 22 22 C 1.38227 * 120.46345 * 0.30607 * 21 20 19 23 23 C 1.38608 * 120.45787 * 359.97438 * 22 21 20 24 24 C 1.38567 * 119.72027 * 359.97438 * 23 22 21 25 25 C 1.34525 * 124.45316 * 90.00021 * 16 15 12 26 26 O 1.21446 * 125.71669 * 0.02562 * 25 16 15 27 27 H 0.97001 * 120.00427 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47144 * 59.99745 * 9 7 2 29 29 H 1.09004 * 109.47120 * 299.99755 * 9 7 2 30 30 H 1.00898 * 111.00129 * 303.95200 * 10 9 7 31 31 H 1.08999 * 109.46984 * 60.00131 * 11 10 9 32 32 H 1.09003 * 109.47207 * 300.00002 * 11 10 9 33 33 H 0.96698 * 114.00459 * 59.99979 * 14 12 11 34 34 H 1.09000 * 109.47021 * 60.00381 * 15 12 11 35 35 H 1.08990 * 109.47429 * 300.00143 * 15 12 11 36 36 H 1.08002 * 120.14336 * 0.69465 * 20 19 17 37 37 H 1.08003 * 119.76764 * 180.27324 * 21 20 19 38 38 H 1.07996 * 119.76953 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.13979 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2059 -3.6155 0.0005 11 6 1.5057 -4.9069 0.0011 12 6 2.5307 -6.0429 0.0005 13 1 3.2111 -5.9178 -0.8418 14 8 3.2734 -6.0150 1.2210 15 6 1.8054 -7.3842 -0.1246 16 7 2.7869 -8.4719 -0.1258 17 6 3.3671 -8.9724 -1.2315 18 8 3.1638 -8.5997 -2.3693 19 6 4.2975 -10.0482 -0.8293 20 6 5.1412 -10.9053 -1.5173 21 6 5.8967 -11.8337 -0.8182 22 6 5.8093 -11.9141 0.5589 23 6 4.9653 -11.0672 1.2600 24 6 4.2048 -10.1334 0.5746 25 6 3.2262 -9.1018 0.9787 26 8 2.8773 -8.8631 2.1171 27 1 -0.4851 0.8400 0.0004 28 1 0.6249 -2.5570 -0.8896 29 1 0.6242 -2.5567 0.8903 30 1 2.8407 -3.5485 -0.7808 31 1 0.8805 -4.9817 -0.8886 32 1 0.8811 -4.9812 0.8914 33 1 2.7306 -6.1209 2.0143 34 1 1.2389 -7.4055 -1.0556 35 1 1.1250 -7.5093 0.7177 36 1 5.2134 -10.8473 -2.5934 37 1 6.5579 -12.4992 -1.3533 38 1 6.4027 -12.6419 1.0923 39 1 4.9013 -11.1342 2.3361 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886461299.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:57 Heat of formation + Delta-G solvation = -64.562386 kcal Electronic energy + Delta-G solvation = -23876.599534 eV Core-core repulsion = 20171.158792 eV Total energy + Delta-G solvation = -3705.440742 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.56385 -38.98882 -38.80711 -37.61446 -35.90019 -34.66125 -32.67913 -32.29693 -31.57850 -29.80954 -27.24407 -25.39320 -25.05325 -23.13531 -22.51025 -21.55459 -21.37680 -20.14182 -18.10677 -17.62507 -17.00332 -16.88893 -16.34622 -15.85412 -15.58650 -15.38520 -14.91704 -14.71294 -14.68680 -14.44517 -14.16586 -14.05910 -13.98140 -13.14602 -12.95710 -12.77630 -12.33463 -12.16953 -12.12450 -11.56349 -11.31791 -11.07595 -10.85596 -10.76811 -10.67545 -10.54533 -10.32279 -10.02532 -9.72287 -9.66992 -9.42777 -9.09655 -8.48217 -7.29759 -6.03118 -4.04778 -0.28843 0.52957 1.69342 2.06760 2.72836 3.18139 3.29669 3.32256 3.39305 3.45348 3.99555 4.17564 4.39063 4.41576 4.49471 4.59246 4.62636 4.76670 4.82089 4.96586 5.08927 5.26316 5.31035 5.33122 5.47880 5.50715 5.51761 5.65447 5.67617 5.72606 6.04955 6.12349 6.22330 6.46564 6.97287 7.20065 7.38763 7.43785 7.78060 7.88646 8.11435 8.36318 8.59185 9.04754 9.60265 11.08130 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.030246 B = 0.002554 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.513504 B =10962.670574 C =11090.003076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.679 5.679 11 C 0.033 3.967 12 C 0.096 3.904 13 H 0.099 0.901 14 O -0.542 6.542 15 C 0.077 3.923 16 N -0.567 5.567 17 C 0.573 3.427 18 O -0.462 6.462 19 C -0.138 4.138 20 C -0.046 4.046 21 C -0.099 4.099 22 C -0.097 4.097 23 C -0.047 4.047 24 C -0.135 4.135 25 C 0.579 3.421 26 O -0.457 6.457 27 H 0.261 0.739 28 H -0.014 1.014 29 H 0.028 0.972 30 H 0.330 0.670 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.375 0.625 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.390 -28.740 -0.764 30.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.082 0.918 9 C 0.067 3.933 10 N -0.310 5.310 11 C -0.099 4.099 12 C 0.035 3.965 13 H 0.117 0.883 14 O -0.347 6.347 15 C -0.044 4.044 16 N -0.308 5.308 17 C 0.362 3.638 18 O -0.333 6.333 19 C -0.142 4.142 20 C -0.065 4.065 21 C -0.117 4.117 22 C -0.115 4.115 23 C -0.065 4.065 24 C -0.139 4.139 25 C 0.367 3.633 26 O -0.327 6.327 27 H 0.070 0.930 28 H 0.004 0.996 29 H 0.046 0.954 30 H 0.146 0.854 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.222 0.778 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.159 0.841 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.431 -28.103 -0.479 29.647 hybrid contribution -0.583 0.928 -0.615 1.257 sum 8.849 -27.175 -1.094 28.600 Atomic orbital electron populations 1.69970 1.06094 1.26707 1.51090 1.24998 0.94896 0.99436 0.95332 0.86408 0.80108 0.83228 0.77484 1.19609 1.21091 1.20974 1.21219 0.93624 0.90155 1.50107 0.91839 1.19583 0.90556 0.87415 0.95733 1.60566 1.20814 1.00471 1.49145 1.22477 0.95178 0.91429 1.00779 1.22305 0.94271 0.90835 0.89050 0.88302 1.86588 1.37387 1.95745 1.14978 1.22649 0.90317 0.85723 1.05724 1.46398 1.41251 1.34541 1.08615 1.18384 0.79763 0.81479 0.84181 1.90823 1.61467 1.61440 1.19602 1.20602 1.00178 0.98780 0.94646 1.20819 0.92608 0.92172 1.00919 1.21464 0.98150 0.97600 0.94463 1.21469 0.97387 0.98266 0.94428 1.20822 0.92783 0.92005 1.00932 1.20629 0.99926 0.98777 0.94559 1.18255 0.80232 0.80622 0.84147 1.90791 1.57396 1.65218 1.19314 0.92964 0.99623 0.95408 0.85362 0.95264 0.91050 0.77777 0.87639 0.88022 0.84027 0.84097 0.84089 0.83983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.51 -14.89 9.32 -34.44 -0.32 -15.21 16 8 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 9 C 0.19 5.17 5.44 -4.98 -0.03 5.14 16 10 N -0.68 -14.95 6.44 -115.06 -0.74 -15.70 16 11 C 0.03 0.56 5.32 -3.82 -0.02 0.54 16 12 C 0.10 1.42 3.42 -26.73 -0.09 1.33 16 13 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 14 O -0.54 -8.80 12.61 -35.23 -0.44 -9.24 16 15 C 0.08 0.92 5.43 -4.04 -0.02 0.90 16 16 N -0.57 -7.02 2.55 -117.62 -0.30 -7.32 16 17 C 0.57 7.15 8.02 -12.46 -0.10 7.05 16 18 O -0.46 -6.78 17.68 5.41 0.10 -6.69 16 19 C -0.14 -1.37 6.40 -104.83 -0.67 -2.04 16 20 C -0.05 -0.32 10.09 -39.32 -0.40 -0.72 16 21 C -0.10 -0.46 10.03 -39.45 -0.40 -0.85 16 22 C -0.10 -0.45 10.04 -39.45 -0.40 -0.85 16 23 C -0.05 -0.33 10.09 -39.32 -0.40 -0.72 16 24 C -0.14 -1.34 6.41 -104.83 -0.67 -2.01 16 25 C 0.58 7.16 7.57 -12.45 -0.09 7.06 16 26 O -0.46 -6.47 17.55 5.41 0.09 -6.38 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H -0.01 -0.39 8.14 -51.93 -0.42 -0.82 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.33 7.08 8.72 -39.29 -0.34 6.74 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.37 5.33 9.05 45.56 0.41 5.75 16 34 H 0.11 1.17 7.96 -51.93 -0.41 0.75 16 35 H 0.10 1.10 7.97 -51.93 -0.41 0.68 16 36 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.14 0.24 8.06 -52.48 -0.42 -0.18 16 38 H 0.14 0.24 8.06 -52.49 -0.42 -0.18 16 39 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 346.77 15.07 5.23 5.23 Total: -1.00 -35.05 346.77 -8.16 -43.22 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -4.11 Total: 5.16 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -3.70 Total: 1.11 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.30 Total: -49.51 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.25 Total: -22.31 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.05 -8.16 -43.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886461299.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.347 kcal (2) G-P(sol) polarization free energy of solvation -35.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds