Wall clock time and date at job start Fri Apr 10 2020 17:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99498 * 2 1 4 4 H 1.48498 * 109.47140 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47083 * 300.00226 * 3 2 1 6 6 H 1.48494 * 109.47204 * 60.00021 * 3 2 1 7 7 C 1.37873 * 120.00572 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00130 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99779 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47054 * 179.97438 * 9 7 2 11 11 C 1.46902 * 111.00106 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47222 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.46969 * 304.99913 * 12 11 10 14 14 O 1.42900 * 109.46891 * 65.00202 * 12 11 10 15 15 C 1.53000 * 109.47044 * 184.99864 * 12 11 10 16 16 N 1.46503 * 109.47142 * 179.97438 * 15 12 11 17 17 C 1.34526 * 124.46451 * 269.97988 * 16 15 12 18 18 O 1.21448 * 125.70569 * 0.02562 * 17 16 15 19 19 C 1.47812 * 108.58074 * 179.80134 * 17 16 15 20 20 C 1.38563 * 134.29583 * 179.46509 * 19 17 16 21 21 C 1.38614 * 119.71631 * 180.41241 * 20 19 17 22 22 C 1.38227 * 120.46345 * 0.30607 * 21 20 19 23 23 C 1.38608 * 120.45787 * 359.97438 * 22 21 20 24 24 C 1.38567 * 119.72027 * 359.97438 * 23 22 21 25 25 C 1.34525 * 124.45316 * 90.00021 * 16 15 12 26 26 O 1.21446 * 125.71669 * 0.02562 * 25 16 15 27 27 H 0.97001 * 120.00427 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47144 * 59.99745 * 9 7 2 29 29 H 1.09004 * 109.47120 * 299.99755 * 9 7 2 30 30 H 1.00898 * 111.00129 * 303.95200 * 10 9 7 31 31 H 1.08999 * 109.46984 * 60.00131 * 11 10 9 32 32 H 1.09003 * 109.47207 * 300.00002 * 11 10 9 33 33 H 0.96698 * 114.00459 * 59.99979 * 14 12 11 34 34 H 1.09000 * 109.47021 * 60.00381 * 15 12 11 35 35 H 1.08990 * 109.47429 * 300.00143 * 15 12 11 36 36 H 1.08002 * 120.14336 * 0.69465 * 20 19 17 37 37 H 1.08003 * 119.76764 * 180.27324 * 21 20 19 38 38 H 1.07996 * 119.76953 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.13979 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2059 -3.6155 0.0005 11 6 1.5057 -4.9069 0.0011 12 6 2.5307 -6.0429 0.0005 13 1 3.2111 -5.9178 -0.8418 14 8 3.2734 -6.0150 1.2210 15 6 1.8054 -7.3842 -0.1246 16 7 2.7869 -8.4719 -0.1258 17 6 3.3671 -8.9724 -1.2315 18 8 3.1638 -8.5997 -2.3693 19 6 4.2975 -10.0482 -0.8293 20 6 5.1412 -10.9053 -1.5173 21 6 5.8967 -11.8337 -0.8182 22 6 5.8093 -11.9141 0.5589 23 6 4.9653 -11.0672 1.2600 24 6 4.2048 -10.1334 0.5746 25 6 3.2262 -9.1018 0.9787 26 8 2.8773 -8.8631 2.1171 27 1 -0.4851 0.8400 0.0004 28 1 0.6249 -2.5570 -0.8896 29 1 0.6242 -2.5567 0.8903 30 1 2.8407 -3.5485 -0.7808 31 1 0.8805 -4.9817 -0.8886 32 1 0.8811 -4.9812 0.8914 33 1 2.7306 -6.1209 2.0143 34 1 1.2389 -7.4055 -1.0556 35 1 1.1250 -7.5093 0.7177 36 1 5.2134 -10.8473 -2.5934 37 1 6.5579 -12.4992 -1.3533 38 1 6.4027 -12.6419 1.0923 39 1 4.9013 -11.1342 2.3361 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886461299.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:57 Heat of formation + Delta-G solvation = -92.038652 kcal Electronic energy + Delta-G solvation = -23877.790994 eV Core-core repulsion = 20171.158792 eV Total energy + Delta-G solvation = -3706.632202 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.41270 -39.79304 -39.71347 -38.82597 -36.94678 -36.41245 -34.47687 -33.41675 -32.09886 -31.06890 -28.89171 -26.51893 -26.19618 -24.22240 -23.27618 -23.21989 -22.76811 -20.96204 -18.85990 -18.82723 -18.40964 -17.99998 -17.54980 -17.15810 -16.66611 -16.50254 -16.38729 -15.75545 -15.52921 -15.51708 -15.38336 -15.16810 -15.01489 -14.75537 -14.26455 -13.70700 -13.49180 -13.31793 -13.21858 -13.02865 -12.74137 -12.67021 -12.62353 -12.32921 -12.11495 -11.76815 -11.53194 -11.45360 -11.31311 -10.70425 -10.63430 -10.19894 -10.15571 -9.15672 -8.26168 -6.37272 -1.00477 0.00953 0.99435 1.17282 1.38935 1.39840 1.54102 1.81652 2.37736 2.58715 2.64887 3.07078 3.14518 3.23661 3.42746 3.61685 3.69870 3.92440 3.96354 4.07977 4.20297 4.21716 4.23550 4.31935 4.45675 4.50514 4.61641 4.85149 4.86292 4.97350 5.03106 5.21004 5.23323 5.29109 5.53483 5.57364 5.72217 5.97251 6.06987 6.36612 6.50908 6.59940 6.72327 6.83650 7.33636 8.85633 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.030246 B = 0.002554 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.513504 B =10962.670574 C =11090.003076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.209 3.791 10 N -0.683 5.683 11 C 0.034 3.966 12 C 0.110 3.890 13 H 0.088 0.912 14 O -0.557 6.557 15 C 0.081 3.919 16 N -0.572 5.572 17 C 0.569 3.431 18 O -0.496 6.496 19 C -0.162 4.162 20 C -0.047 4.047 21 C -0.084 4.084 22 C -0.082 4.082 23 C -0.047 4.047 24 C -0.159 4.159 25 C 0.574 3.426 26 O -0.485 6.485 27 H 0.266 0.734 28 H -0.036 1.036 29 H 0.003 0.997 30 H 0.332 0.668 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.382 0.618 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.154 0.846 37 H 0.181 0.819 38 H 0.181 0.819 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.663 -30.717 -0.743 32.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.575 4.575 8 H 0.079 0.921 9 C 0.081 3.919 10 N -0.314 5.314 11 C -0.097 4.097 12 C 0.049 3.951 13 H 0.106 0.894 14 O -0.363 6.363 15 C -0.040 4.040 16 N -0.313 5.313 17 C 0.360 3.640 18 O -0.370 6.370 19 C -0.166 4.166 20 C -0.065 4.065 21 C -0.101 4.101 22 C -0.100 4.100 23 C -0.066 4.066 24 C -0.163 4.163 25 C 0.365 3.635 26 O -0.358 6.358 27 H 0.075 0.925 28 H -0.019 1.019 29 H 0.021 0.979 30 H 0.149 0.851 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.231 0.769 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.171 0.829 37 H 0.198 0.802 38 H 0.199 0.801 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 11.714 -30.116 -0.453 32.318 hybrid contribution -1.233 1.392 -0.611 1.957 sum 10.482 -28.724 -1.064 30.595 Atomic orbital electron populations 1.70085 1.07725 1.28040 1.51463 1.25957 0.95849 1.03406 0.94491 0.85261 0.78802 0.78187 0.77899 1.18912 1.20062 1.20191 1.21553 0.93719 0.91546 1.50720 0.92092 1.19228 0.90533 0.88740 0.93391 1.60440 1.20292 1.01246 1.49382 1.22546 0.95797 0.89970 1.01344 1.22089 0.93293 0.91398 0.88275 0.89442 1.86554 1.38238 1.95852 1.15696 1.22519 0.90253 0.84420 1.06821 1.46472 1.41299 1.34413 1.09085 1.18887 0.79707 0.81765 0.83605 1.90789 1.62806 1.62791 1.20605 1.20533 1.01596 0.99579 0.94885 1.21177 0.91832 0.91722 1.01788 1.21960 0.97025 0.96504 0.94658 1.21967 0.95955 0.97458 0.94611 1.21179 0.92269 0.91323 1.01800 1.20571 1.01090 0.99861 0.94770 1.18740 0.80258 0.80866 0.83611 1.90760 1.58612 1.66319 1.20112 0.92507 1.01883 0.97896 0.85071 0.94385 0.90640 0.76891 0.86701 0.86729 0.82855 0.80159 0.80148 0.82799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 45.50 29.54 68.60 2.03 47.52 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.54 -31.78 9.32 25.60 0.24 -31.55 16 8 H 0.06 3.56 7.81 -2.91 -0.02 3.53 16 9 C 0.21 11.54 5.44 85.56 0.47 12.00 16 10 N -0.68 -30.92 6.44 -517.93 -3.33 -34.25 16 11 C 0.03 1.20 5.32 86.30 0.46 1.66 16 12 C 0.11 3.35 3.42 30.60 0.10 3.45 16 13 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 14 O -0.56 -18.48 12.61 -148.98 -1.88 -20.36 16 15 C 0.08 2.00 5.43 86.38 0.47 2.47 16 16 N -0.57 -14.62 2.55 -762.96 -1.95 -16.57 16 17 C 0.57 14.63 8.02 86.82 0.70 15.33 16 18 O -0.50 -15.12 17.68 -3.55 -0.06 -15.18 16 19 C -0.16 -3.13 6.40 -20.00 -0.13 -3.26 16 20 C -0.05 -0.54 10.09 22.44 0.23 -0.32 16 21 C -0.08 -0.41 10.03 22.36 0.22 -0.18 16 22 C -0.08 -0.40 10.04 22.36 0.22 -0.17 16 23 C -0.05 -0.55 10.09 22.44 0.23 -0.32 16 24 C -0.16 -3.06 6.41 -20.00 -0.13 -3.19 16 25 C 0.57 14.52 7.57 86.82 0.66 15.18 16 26 O -0.49 -14.12 17.55 -3.55 -0.06 -14.18 16 27 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 28 H -0.04 -2.14 8.14 -2.39 -0.02 -2.16 16 29 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 30 H 0.33 14.67 8.72 -89.70 -0.78 13.89 16 31 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.38 11.17 9.05 -74.06 -0.67 10.50 16 34 H 0.11 2.61 7.96 -2.39 -0.02 2.59 16 35 H 0.11 2.51 7.97 -2.39 -0.02 2.50 16 36 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 37 H 0.18 -0.48 8.06 -2.91 -0.02 -0.51 16 38 H 0.18 -0.49 8.06 -2.91 -0.02 -0.51 16 39 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -78.22 346.77 -1.13 -79.35 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -0.35 Total: 19.06 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 4.20 Total: 11.64 kcal Atomic # 7 Polarization: -102.85 SS G_CDS: -5.00 Total: -107.85 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -2.00 Total: -49.72 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -78.22 -1.13 -79.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886461299.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.694 kcal (2) G-P(sol) polarization free energy of solvation -78.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds