Wall clock time and date at job start Fri Apr 10 2020 17:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46089 * 118.72943 * 2 1 4 4 C 1.53018 * 109.92353 * 161.66798 * 3 2 1 5 5 O 1.43247 * 108.67083 * 49.16165 * 4 3 2 6 6 C 1.42966 * 112.98688 * 291.63844 * 5 4 3 7 7 H 1.09001 * 109.41426 * 289.56435 * 6 5 4 8 8 C 1.50692 * 109.41327 * 169.70455 * 6 5 4 9 9 O 1.21286 * 120.00516 * 354.85816 * 8 6 5 10 10 N 1.34781 * 119.99932 * 174.86239 * 8 6 5 11 11 C 1.39242 * 120.00083 * 186.10273 * 10 8 6 12 12 C 1.39482 * 119.83187 * 216.67484 * 11 10 8 13 13 C 1.36367 * 120.16558 * 179.97438 * 12 11 10 14 14 C 1.40867 * 119.83200 * 0.02562 * 13 12 11 15 15 C 1.41150 * 120.16577 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99623 * 340.05297 * 15 14 13 17 17 C 1.39908 * 120.00514 * 160.06424 * 15 14 13 18 18 N 1.30877 * 119.99339 * 329.04982 * 17 15 14 19 19 Si 1.86790 * 120.00305 * 148.77979 * 17 15 14 20 20 H 1.48501 * 109.47244 * 265.28308 * 19 17 15 21 21 H 1.48499 * 109.47481 * 25.28542 * 19 17 15 22 22 H 1.48507 * 109.47302 * 145.28707 * 19 17 15 23 23 C 1.40871 * 119.67092 * 0.27409 * 14 13 12 24 24 C 1.36379 * 119.82781 * 359.41979 * 23 14 13 25 25 C 1.33769 * 118.75570 * 180.08776 * 2 1 3 26 26 O 1.21277 * 118.76301 * 1.84165 * 25 2 1 27 27 H 1.08998 * 109.47278 * 89.99553 * 1 2 3 28 28 H 1.08992 * 109.46998 * 210.00117 * 1 2 3 29 29 H 1.09009 * 109.46869 * 330.00105 * 1 2 3 30 30 H 1.08994 * 109.39540 * 41.52366 * 3 2 1 31 31 H 1.09008 * 109.39779 * 281.80048 * 3 2 1 32 32 H 1.08997 * 109.60303 * 289.40277 * 4 3 2 33 33 H 1.09004 * 109.60439 * 168.91608 * 4 3 2 34 34 H 0.97002 * 120.00137 * 6.10248 * 10 8 6 35 35 H 1.08004 * 119.91604 * 359.97438 * 12 11 10 36 36 H 1.08012 * 120.08552 * 179.97438 * 13 12 11 37 37 H 0.96996 * 119.99798 * 179.72422 * 18 17 15 38 38 H 1.08002 * 120.08453 * 179.72747 * 23 14 13 39 39 H 1.07995 * 119.91694 * 180.29923 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1672 1.2811 0.0000 4 6 3.6154 1.0819 0.4525 5 8 4.1832 -0.0026 -0.2914 6 6 3.6084 -1.2688 0.0406 7 1 3.9247 -1.5588 1.0426 8 6 4.0722 -2.3048 -0.9505 9 8 4.7443 -1.9737 -1.9043 10 7 3.7401 -3.5995 -0.7772 11 6 4.2719 -4.5734 -1.6184 12 6 3.4875 -5.6600 -2.0049 13 6 4.0012 -6.6174 -2.8290 14 6 5.3279 -6.5071 -3.2896 15 6 5.8666 -7.4937 -4.1432 16 1 5.4118 -8.4721 -4.1924 17 6 6.9899 -7.2044 -4.9256 18 7 7.1901 -5.9852 -5.3573 19 14 8.2076 -8.5565 -5.3475 20 1 9.3212 -8.5441 -4.3651 21 1 7.5216 -9.8727 -5.3015 22 1 8.7485 -8.3277 -6.7115 23 6 6.1160 -5.4101 -2.8898 24 6 5.5864 -4.4572 -2.0703 25 6 2.1086 -1.1727 -0.0018 26 8 1.4578 -2.1955 -0.0375 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5139 30 1 1.6663 1.9684 0.6815 31 1 2.1569 1.6996 -1.0065 32 1 3.6369 0.8465 1.5165 33 1 4.1855 1.9919 0.2652 34 1 3.1307 -3.8530 -0.0663 35 1 2.4706 -5.7433 -1.6506 36 1 3.3927 -7.4585 -3.1272 37 1 7.9709 -5.7838 -5.8963 38 1 7.1353 -5.3212 -3.2354 39 1 6.1877 -3.6131 -1.7668 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899987938.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:03 Heat of formation + Delta-G solvation = -73.137001 kcal Electronic energy + Delta-G solvation = -24528.841069 eV Core-core repulsion = 20823.028504 eV Total energy + Delta-G solvation = -3705.812565 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.20281 -39.19164 -37.99803 -37.11713 -35.61427 -34.38641 -32.95023 -30.81614 -29.73729 -29.39686 -28.62996 -26.39698 -24.61280 -24.11803 -21.58921 -21.11270 -19.83924 -19.37450 -18.11707 -17.63133 -17.26660 -17.00182 -16.22933 -15.94818 -15.55194 -15.17020 -14.82500 -14.49740 -14.18473 -13.87543 -13.69065 -13.40477 -13.02194 -12.93981 -12.62278 -12.49386 -12.42070 -11.99002 -11.96038 -11.60563 -11.39020 -11.11556 -10.97682 -10.88814 -10.49200 -9.96534 -9.74542 -9.69645 -9.33653 -9.16297 -9.10629 -8.59758 -7.47528 -7.09237 -6.80476 -4.22080 2.10128 2.33276 2.66470 3.00426 3.05872 3.09699 3.13295 3.16126 3.40698 3.93275 3.98268 4.01206 4.33940 4.57758 4.62909 4.70068 4.84675 4.94348 5.04332 5.14943 5.19064 5.36139 5.52118 5.74155 5.91758 6.27079 6.42240 6.46176 6.85417 6.93419 7.03296 7.08982 7.17331 7.34388 7.61861 7.68533 7.75195 7.98755 8.08481 8.25542 8.36198 8.63016 8.80101 8.89422 9.05454 10.09616 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.031860 B = 0.003145 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.637936 B = 8901.009420 C = 9453.745258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.607 5.607 3 C 0.077 3.923 4 C 0.040 3.960 5 O -0.337 6.337 6 C 0.060 3.940 7 H 0.117 0.883 8 C 0.513 3.487 9 O -0.503 6.503 10 N -0.630 5.630 11 C -0.018 4.018 12 C -0.090 4.090 13 C -0.222 4.222 14 C 0.111 3.889 15 C -0.463 4.463 16 H 0.082 0.918 17 C 0.084 3.916 18 N -0.765 5.765 19 Si 0.900 3.100 20 H -0.266 1.266 21 H -0.260 1.260 22 H -0.278 1.278 23 C -0.172 4.172 24 C -0.075 4.075 25 C 0.498 3.502 26 O -0.522 6.522 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.122 0.878 34 H 0.401 0.599 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.284 0.716 38 H 0.110 0.890 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.056 14.098 12.930 20.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.342 5.342 3 C -0.046 4.046 4 C -0.037 4.037 5 O -0.254 6.254 6 C -0.004 4.004 7 H 0.134 0.866 8 C 0.296 3.704 9 O -0.377 6.377 10 N -0.276 5.276 11 C -0.110 4.110 12 C -0.110 4.110 13 C -0.242 4.242 14 C 0.108 3.892 15 C -0.491 4.491 16 H 0.100 0.900 17 C -0.138 4.138 18 N -0.388 5.388 19 Si 0.724 3.276 20 H -0.191 1.191 21 H -0.184 1.184 22 H -0.203 1.203 23 C -0.192 4.192 24 C -0.095 4.095 25 C 0.284 3.716 26 O -0.399 6.399 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.140 0.860 34 H 0.237 0.763 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.128 0.872 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.606 14.003 11.931 19.907 hybrid contribution -0.040 -0.315 0.277 0.422 sum -7.646 13.688 12.208 19.871 Atomic orbital electron populations 1.21749 0.78541 1.03338 1.02528 1.47299 1.07690 1.05831 1.73349 1.22262 0.93589 0.85336 1.03404 1.23105 0.92628 0.91953 0.96051 1.88390 1.60355 1.13151 1.63497 1.22260 0.89264 0.87620 1.01290 0.86567 1.19232 0.82628 0.82771 0.85765 1.90769 1.38019 1.79821 1.29110 1.42801 1.46681 1.04550 1.33519 1.17059 0.94189 0.93208 1.06521 1.20089 0.96720 0.95344 0.98850 1.20474 0.96085 1.01229 1.06458 1.17609 0.90161 0.91454 0.89950 1.19544 1.10119 0.99437 1.19988 0.90026 1.25979 0.98083 0.96135 0.93576 1.69966 1.24984 1.21430 1.22435 0.86433 0.80760 0.82238 0.78174 1.19116 1.18365 1.20319 1.20746 0.99994 0.96860 1.01562 1.20294 0.92846 0.97928 0.98475 1.20451 0.90476 0.83804 0.76870 1.90753 1.66781 1.33536 1.48782 0.92273 0.89984 0.90985 0.89302 0.90261 0.91643 0.85993 0.76329 0.89037 0.88624 0.90534 0.87184 0.88470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 10.31 59.85 0.62 1.30 16 2 N -0.61 -6.47 3.23 -182.33 -0.59 -7.06 16 3 C 0.08 0.56 6.67 -4.26 -0.03 0.53 16 4 C 0.04 0.31 6.90 37.17 0.26 0.57 16 5 O -0.34 -4.68 10.03 -55.11 -0.55 -5.23 16 6 C 0.06 0.88 3.32 -29.21 -0.10 0.78 16 7 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 8 C 0.51 10.31 6.75 -10.99 -0.07 10.24 16 9 O -0.50 -12.35 14.43 -14.33 -0.21 -12.56 16 10 N -0.63 -12.71 4.94 -9.74 -0.05 -12.76 16 11 C -0.02 -0.43 6.22 -83.57 -0.52 -0.95 16 12 C -0.09 -2.14 9.90 -39.79 -0.39 -2.53 16 13 C -0.22 -5.65 9.74 -39.26 -0.38 -6.03 16 14 C 0.11 3.06 5.59 -106.80 -0.60 2.46 16 15 C -0.46 -12.49 8.96 -37.85 -0.34 -12.83 16 16 H 0.08 2.11 8.01 -52.48 -0.42 1.69 16 17 C 0.08 2.15 4.84 -17.33 -0.08 2.06 16 18 N -0.77 -20.36 11.55 55.55 0.64 -19.72 16 19 Si 0.90 18.71 29.65 -169.99 -5.04 13.67 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 23 C -0.17 -4.73 8.73 -39.26 -0.34 -5.07 16 24 C -0.08 -1.96 8.57 -39.79 -0.34 -2.30 16 25 C 0.50 7.05 7.12 -11.61 -0.08 6.97 16 26 O -0.52 -8.72 14.49 5.56 0.08 -8.64 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.78 7.29 -51.93 -0.38 0.40 16 29 H 0.07 0.37 7.93 -51.92 -0.41 -0.05 16 30 H 0.09 0.34 7.99 -51.93 -0.42 -0.08 16 31 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.07 0.39 8.10 -51.93 -0.42 -0.04 16 33 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.40 6.99 7.65 -40.82 -0.31 6.68 16 35 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 36 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 37 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 38 H 0.11 3.09 6.34 -52.49 -0.33 2.76 16 39 H 0.10 2.50 6.67 -52.49 -0.35 2.15 16 LS Contribution 330.21 15.07 4.98 4.98 Total: -1.00 -34.83 330.21 -7.86 -42.69 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -4.71 Total: 9.45 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -2.41 Total: -4.81 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.00 Total: -39.54 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.68 Total: -26.43 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.04 Total: 13.67 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.83 -7.86 -42.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899987938.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.452 kcal (2) G-P(sol) polarization free energy of solvation -34.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds