Wall clock time and date at job start Fri Apr 10 2020 17:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46089 * 118.72943 * 2 1 4 4 C 1.53018 * 109.92353 * 161.66798 * 3 2 1 5 5 O 1.43247 * 108.67083 * 49.16165 * 4 3 2 6 6 C 1.42966 * 112.98688 * 291.63844 * 5 4 3 7 7 H 1.09001 * 109.41426 * 289.56435 * 6 5 4 8 8 C 1.50692 * 109.41327 * 169.70455 * 6 5 4 9 9 O 1.21286 * 120.00516 * 354.85816 * 8 6 5 10 10 N 1.34781 * 119.99932 * 174.86239 * 8 6 5 11 11 C 1.39242 * 120.00083 * 186.10273 * 10 8 6 12 12 C 1.39482 * 119.83187 * 216.67484 * 11 10 8 13 13 C 1.36367 * 120.16558 * 179.97438 * 12 11 10 14 14 C 1.40867 * 119.83200 * 0.02562 * 13 12 11 15 15 C 1.41150 * 120.16577 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99623 * 340.05297 * 15 14 13 17 17 C 1.39908 * 120.00514 * 160.06424 * 15 14 13 18 18 N 1.30877 * 119.99339 * 329.04982 * 17 15 14 19 19 Si 1.86790 * 120.00305 * 148.77979 * 17 15 14 20 20 H 1.48501 * 109.47244 * 265.28308 * 19 17 15 21 21 H 1.48499 * 109.47481 * 25.28542 * 19 17 15 22 22 H 1.48507 * 109.47302 * 145.28707 * 19 17 15 23 23 C 1.40871 * 119.67092 * 0.27409 * 14 13 12 24 24 C 1.36379 * 119.82781 * 359.41979 * 23 14 13 25 25 C 1.33769 * 118.75570 * 180.08776 * 2 1 3 26 26 O 1.21277 * 118.76301 * 1.84165 * 25 2 1 27 27 H 1.08998 * 109.47278 * 89.99553 * 1 2 3 28 28 H 1.08992 * 109.46998 * 210.00117 * 1 2 3 29 29 H 1.09009 * 109.46869 * 330.00105 * 1 2 3 30 30 H 1.08994 * 109.39540 * 41.52366 * 3 2 1 31 31 H 1.09008 * 109.39779 * 281.80048 * 3 2 1 32 32 H 1.08997 * 109.60303 * 289.40277 * 4 3 2 33 33 H 1.09004 * 109.60439 * 168.91608 * 4 3 2 34 34 H 0.97002 * 120.00137 * 6.10248 * 10 8 6 35 35 H 1.08004 * 119.91604 * 359.97438 * 12 11 10 36 36 H 1.08012 * 120.08552 * 179.97438 * 13 12 11 37 37 H 0.96996 * 119.99798 * 179.72422 * 18 17 15 38 38 H 1.08002 * 120.08453 * 179.72747 * 23 14 13 39 39 H 1.07995 * 119.91694 * 180.29923 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1672 1.2811 0.0000 4 6 3.6154 1.0819 0.4525 5 8 4.1832 -0.0026 -0.2914 6 6 3.6084 -1.2688 0.0406 7 1 3.9247 -1.5588 1.0426 8 6 4.0722 -2.3048 -0.9505 9 8 4.7443 -1.9737 -1.9043 10 7 3.7401 -3.5995 -0.7772 11 6 4.2719 -4.5734 -1.6184 12 6 3.4875 -5.6600 -2.0049 13 6 4.0012 -6.6174 -2.8290 14 6 5.3279 -6.5071 -3.2896 15 6 5.8666 -7.4937 -4.1432 16 1 5.4118 -8.4721 -4.1924 17 6 6.9899 -7.2044 -4.9256 18 7 7.1901 -5.9852 -5.3573 19 14 8.2076 -8.5565 -5.3475 20 1 9.3212 -8.5441 -4.3651 21 1 7.5216 -9.8727 -5.3015 22 1 8.7485 -8.3277 -6.7115 23 6 6.1160 -5.4101 -2.8898 24 6 5.5864 -4.4572 -2.0703 25 6 2.1086 -1.1727 -0.0018 26 8 1.4578 -2.1955 -0.0375 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5139 30 1 1.6663 1.9684 0.6815 31 1 2.1569 1.6996 -1.0065 32 1 3.6369 0.8465 1.5165 33 1 4.1855 1.9919 0.2652 34 1 3.1307 -3.8530 -0.0663 35 1 2.4706 -5.7433 -1.6506 36 1 3.3927 -7.4585 -3.1272 37 1 7.9709 -5.7838 -5.8963 38 1 7.1353 -5.3212 -3.2354 39 1 6.1877 -3.6131 -1.7668 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899987938.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:02 Heat of formation + Delta-G solvation = -97.614703 kcal Electronic energy + Delta-G solvation = -24529.902502 eV Core-core repulsion = 20823.028504 eV Total energy + Delta-G solvation = -3706.873998 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.29271 -40.76818 -39.17708 -38.78256 -36.55309 -36.24240 -34.81117 -31.89432 -31.42649 -30.98540 -30.00985 -27.52863 -26.31009 -24.83105 -23.39306 -23.02154 -21.47094 -20.38982 -19.33796 -19.11918 -18.98101 -17.99254 -17.75559 -17.12781 -16.79488 -16.67549 -15.89847 -15.86691 -15.67700 -15.34491 -14.98396 -14.77664 -14.44404 -14.21509 -13.97474 -13.87666 -13.63774 -13.46997 -13.32677 -13.18918 -12.85039 -12.71718 -12.33059 -12.29555 -11.89761 -11.77593 -11.68040 -11.17881 -10.91558 -10.63942 -10.50928 -9.92885 -9.50784 -9.05260 -8.73436 -6.25648 0.71618 1.00198 1.10894 1.31819 1.38718 1.53132 1.56950 1.85422 1.92165 2.18694 2.63658 2.85516 3.09991 3.50883 3.69452 3.70790 3.83150 4.12111 4.25166 4.39095 4.40796 4.43123 4.55297 4.66260 4.80355 4.88467 4.89896 5.06275 5.13650 5.18190 5.23555 5.39358 5.59906 5.65852 5.83426 6.01997 6.05251 6.07694 6.28367 6.57590 6.62517 6.74628 6.86910 6.95912 7.26293 8.20511 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.031860 B = 0.003145 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.637936 B = 8901.009420 C = 9453.745258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.601 5.601 3 C 0.071 3.929 4 C 0.031 3.969 5 O -0.370 6.370 6 C 0.073 3.927 7 H 0.152 0.848 8 C 0.508 3.492 9 O -0.556 6.556 10 N -0.625 5.625 11 C -0.014 4.014 12 C -0.089 4.089 13 C -0.232 4.232 14 C 0.082 3.918 15 C -0.496 4.496 16 H 0.085 0.915 17 C 0.042 3.958 18 N -0.805 5.805 19 Si 0.982 3.018 20 H -0.262 1.262 21 H -0.251 1.251 22 H -0.266 1.266 23 C -0.195 4.195 24 C -0.085 4.085 25 C 0.491 3.509 26 O -0.558 6.558 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.136 0.864 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.149 0.851 34 H 0.417 0.583 35 H 0.123 0.877 36 H 0.110 0.890 37 H 0.293 0.707 38 H 0.093 0.907 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.064 15.342 14.492 22.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.334 5.334 3 C -0.050 4.050 4 C -0.045 4.045 5 O -0.288 6.288 6 C 0.009 3.991 7 H 0.168 0.832 8 C 0.293 3.707 9 O -0.434 6.434 10 N -0.271 5.271 11 C -0.107 4.107 12 C -0.108 4.108 13 C -0.252 4.252 14 C 0.080 3.920 15 C -0.523 4.523 16 H 0.103 0.897 17 C -0.177 4.177 18 N -0.428 5.428 19 Si 0.801 3.199 20 H -0.187 1.187 21 H -0.175 1.175 22 H -0.191 1.191 23 C -0.215 4.215 24 C -0.105 4.105 25 C 0.277 3.723 26 O -0.438 6.438 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.133 0.867 30 H 0.154 0.846 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.167 0.833 34 H 0.255 0.745 35 H 0.141 0.859 36 H 0.128 0.872 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.660 15.305 13.535 22.191 hybrid contribution 0.172 -0.488 -0.156 0.541 sum -8.488 14.817 13.379 21.693 Atomic orbital electron populations 1.21930 0.77162 1.04814 1.02562 1.47477 1.08746 1.05925 1.71222 1.22578 0.93491 0.84300 1.04665 1.23569 0.93103 0.90932 0.96904 1.88358 1.61318 1.13824 1.65303 1.22013 0.89813 0.86806 1.00479 0.83160 1.20203 0.81085 0.83394 0.85978 1.90738 1.40224 1.80776 1.31652 1.42758 1.46654 1.04388 1.33288 1.17163 0.93494 0.93993 1.06049 1.20381 0.97988 0.94491 0.97985 1.20731 0.95584 1.02178 1.06733 1.17942 0.91251 0.91880 0.90954 1.19824 1.11946 0.99585 1.20965 0.89651 1.26935 0.99297 0.98668 0.92758 1.70001 1.25951 1.23733 1.23128 0.85216 0.77696 0.78729 0.78252 1.18682 1.17472 1.19109 1.20680 0.99606 0.98130 1.03096 1.20330 0.93978 0.97413 0.98786 1.20385 0.90112 0.84600 0.77239 1.90729 1.67212 1.34931 1.50904 0.92949 0.91300 0.86735 0.84650 0.90485 0.89165 0.83342 0.74518 0.85876 0.87171 0.89649 0.88933 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 10.31 127.77 1.32 2.40 16 2 N -0.60 -11.14 3.23 -849.74 -2.74 -13.89 16 3 C 0.07 0.75 6.67 86.46 0.58 1.32 16 4 C 0.03 0.37 6.90 71.99 0.50 0.86 16 5 O -0.37 -9.71 10.03 -129.97 -1.30 -11.02 16 6 C 0.07 2.04 3.32 28.99 0.10 2.14 16 7 H 0.15 3.05 8.14 -2.39 -0.02 3.03 16 8 C 0.51 20.56 6.75 87.65 0.59 21.15 16 9 O -0.56 -28.21 14.43 15.96 0.23 -27.98 16 10 N -0.62 -25.21 4.94 -303.10 -1.50 -26.71 16 11 C -0.01 -0.69 6.22 38.56 0.24 -0.45 16 12 C -0.09 -4.20 9.90 22.13 0.22 -3.98 16 13 C -0.23 -11.97 9.74 22.48 0.22 -11.76 16 14 C 0.08 4.70 5.59 -21.28 -0.12 4.58 16 15 C -0.50 -27.50 8.96 23.39 0.21 -27.29 16 16 H 0.09 4.50 8.01 -2.91 -0.02 4.48 16 17 C 0.04 2.20 4.84 85.24 0.41 2.61 16 18 N -0.80 -44.24 11.55 21.82 0.25 -43.99 16 19 Si 0.98 38.74 29.65 68.60 2.03 40.78 16 20 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 21 H -0.25 -9.50 7.11 99.48 0.71 -8.80 16 22 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 23 C -0.20 -11.29 8.73 22.48 0.20 -11.10 16 24 C -0.08 -4.61 8.57 22.14 0.19 -4.42 16 25 C 0.49 13.13 7.12 87.70 0.62 13.76 16 26 O -0.56 -18.16 14.49 -3.02 -0.04 -18.20 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 1.19 7.29 -2.39 -0.02 1.17 16 29 H 0.11 0.64 7.93 -2.38 -0.02 0.62 16 30 H 0.14 0.23 7.99 -2.39 -0.02 0.21 16 31 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.09 0.67 8.10 -2.39 -0.02 0.65 16 33 H 0.15 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.42 14.21 7.65 -92.71 -0.71 13.50 16 35 H 0.12 4.99 8.06 -2.91 -0.02 4.96 16 36 H 0.11 5.22 8.06 -2.90 -0.02 5.20 16 37 H 0.29 14.42 8.30 -92.71 -0.77 13.65 16 38 H 0.09 5.54 6.34 -2.91 -0.02 5.52 16 39 H 0.09 4.94 6.67 -2.91 -0.02 4.92 16 Total: -1.00 -80.62 330.21 2.58 -78.04 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: 0.38 Total: 33.11 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 5.27 Total: -10.16 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -3.99 Total: -84.59 kcal Atomic # 8 Polarization: -56.08 SS G_CDS: -1.12 Total: -57.19 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.78 kcal Total: -80.62 2.58 -78.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899987938.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.573 kcal (2) G-P(sol) polarization free energy of solvation -80.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds