Wall clock time and date at job start Fri Apr 10 2020 17:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46096 * 118.73021 * 2 1 4 4 C 1.53020 * 109.92740 * 198.38159 * 3 2 1 5 5 O 1.43235 * 108.68147 * 310.85858 * 4 3 2 6 6 C 1.42962 * 112.99626 * 68.34365 * 5 4 3 7 7 H 1.09003 * 109.40891 * 70.50495 * 6 5 4 8 8 C 1.50691 * 109.36200 * 190.33091 * 6 5 4 9 9 O 1.21287 * 120.00146 * 5.17744 * 8 6 5 10 10 N 1.34777 * 120.00158 * 185.17199 * 8 6 5 11 11 C 1.39244 * 120.00040 * 175.71938 * 10 8 6 12 12 C 1.39484 * 119.82985 * 214.99129 * 11 10 8 13 13 C 1.36371 * 120.16376 * 179.71587 * 12 11 10 14 14 C 1.40875 * 119.82998 * 0.55869 * 13 12 11 15 15 C 1.41150 * 120.16595 * 179.73872 * 14 13 12 16 16 H 1.07997 * 120.00258 * 214.78339 * 15 14 13 17 17 C 1.39907 * 119.99850 * 34.78087 * 15 14 13 18 18 N 1.30873 * 120.00044 * 355.51430 * 17 15 14 19 19 Si 1.86798 * 119.99859 * 175.51636 * 17 15 14 20 20 H 1.48501 * 109.47125 * 90.00016 * 19 17 15 21 21 H 1.48500 * 109.46858 * 209.99787 * 19 17 15 22 22 H 1.48494 * 109.47285 * 329.99823 * 19 17 15 23 23 C 1.40868 * 119.66812 * 359.71638 * 14 13 12 24 24 C 1.36370 * 119.83180 * 0.02562 * 23 14 13 25 25 C 1.33872 * 118.73073 * 180.02562 * 2 1 3 26 26 O 1.21278 * 118.83539 * 358.09383 * 25 2 1 27 27 H 1.09002 * 109.47277 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47224 * 299.97417 * 1 2 3 29 29 H 1.09002 * 109.47490 * 59.97334 * 1 2 3 30 30 H 1.08993 * 109.39516 * 318.52305 * 3 2 1 31 31 H 1.09000 * 109.39125 * 78.24928 * 3 2 1 32 32 H 1.09009 * 109.60182 * 70.59076 * 4 3 2 33 33 H 1.08994 * 109.60914 * 190.92007 * 4 3 2 34 34 H 0.97001 * 119.99988 * 355.72096 * 10 8 6 35 35 H 1.07996 * 119.91555 * 0.02562 * 12 11 10 36 36 H 1.08001 * 120.08459 * 180.26988 * 13 12 11 37 37 H 0.97001 * 120.00083 * 180.02562 * 18 17 15 38 38 H 1.08010 * 120.07978 * 180.02562 * 23 14 13 39 39 H 1.07997 * 119.91622 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1672 1.2811 0.0000 4 6 3.6150 1.0822 -0.4536 5 8 4.1835 -0.0028 0.2888 6 6 3.6083 -1.2687 -0.0433 7 1 3.9246 -1.5586 -1.0454 8 6 4.0733 -2.3042 0.9478 9 8 4.7454 -1.9723 1.9014 10 7 3.7423 -3.5992 0.7749 11 6 4.2451 -4.5679 1.6396 12 6 4.5575 -5.8373 1.1532 13 6 5.0557 -6.7893 1.9929 14 6 5.2437 -6.4916 3.3569 15 6 5.7538 -7.4734 4.2334 16 1 5.4096 -7.5156 5.2562 17 6 6.7054 -8.3920 3.7772 18 7 7.0577 -8.3977 2.5167 19 14 7.4730 -9.6103 4.9671 20 1 6.6565 -10.8502 5.0014 21 1 8.8510 -9.9373 4.5203 22 1 7.5219 -9.0120 6.3252 23 6 4.9205 -5.2091 3.8417 24 6 4.4280 -4.2658 2.9889 25 6 2.1084 -1.1739 -0.0005 26 8 1.4585 -2.1972 0.0344 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5134 0.8902 29 1 -0.3634 0.5142 -0.8897 30 1 1.6657 1.9687 -0.6809 31 1 2.1575 1.6991 1.0066 32 1 3.6358 0.8471 -1.5179 33 1 4.1845 1.9930 -0.2692 34 1 3.1537 -3.8564 0.0480 35 1 4.4090 -6.0652 0.1081 36 1 5.3013 -7.7704 1.6140 37 1 7.7171 -9.0348 2.2003 38 1 5.0623 -4.9736 4.8862 39 1 4.1794 -3.2822 3.3592 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899987939.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:06 Heat of formation + Delta-G solvation = -70.382299 kcal Electronic energy + Delta-G solvation = -24485.172371 eV Core-core repulsion = 20779.479259 eV Total energy + Delta-G solvation = -3705.693112 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.25140 -39.29013 -38.04683 -37.14737 -35.64183 -34.37255 -32.87707 -30.84199 -29.76085 -29.44143 -28.53555 -26.40000 -24.61569 -24.14198 -21.74048 -20.90612 -19.99935 -19.38720 -18.17197 -17.64415 -17.22833 -17.05291 -16.30061 -15.96160 -15.58936 -15.09069 -14.88490 -14.53261 -14.17482 -13.95042 -13.73429 -13.46647 -13.05804 -12.84207 -12.68778 -12.46259 -12.42041 -12.05856 -11.71153 -11.64348 -11.31376 -11.11931 -10.98923 -10.94113 -10.67796 -9.98479 -9.73122 -9.44787 -9.39218 -9.16518 -9.09285 -8.82018 -7.49266 -6.81313 -6.57486 -4.29665 2.03199 2.30643 2.63668 2.96704 3.04806 3.12425 3.14628 3.17600 3.38248 3.93579 3.95162 4.02127 4.30719 4.59782 4.69558 4.73821 4.81106 4.95775 5.01591 5.10317 5.13948 5.32472 5.53390 5.70398 5.88161 6.25341 6.40649 6.49496 6.80011 6.89462 6.97896 7.11271 7.24526 7.34407 7.65154 7.69087 7.79532 7.90018 8.10838 8.30177 8.36145 8.65497 8.74802 8.97230 9.04478 10.33517 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.036868 B = 0.002957 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.284823 B = 9467.925058 C = 9653.027898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.607 5.607 3 C 0.078 3.922 4 C 0.040 3.960 5 O -0.337 6.337 6 C 0.060 3.940 7 H 0.118 0.882 8 C 0.516 3.484 9 O -0.505 6.505 10 N -0.630 5.630 11 C 0.006 3.994 12 C -0.117 4.117 13 C -0.141 4.141 14 C 0.101 3.899 15 C -0.460 4.460 16 H 0.076 0.924 17 C 0.069 3.931 18 N -0.812 5.812 19 Si 0.916 3.084 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.204 4.204 24 C -0.085 4.085 25 C 0.498 3.502 26 O -0.522 6.522 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.123 0.877 34 H 0.403 0.597 35 H 0.092 0.908 36 H 0.133 0.867 37 H 0.277 0.723 38 H 0.096 0.904 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.298 16.704 -9.924 21.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.342 5.342 3 C -0.045 4.045 4 C -0.037 4.037 5 O -0.254 6.254 6 C -0.004 4.004 7 H 0.135 0.865 8 C 0.299 3.701 9 O -0.379 6.379 10 N -0.275 5.275 11 C -0.086 4.086 12 C -0.138 4.138 13 C -0.161 4.161 14 C 0.098 3.902 15 C -0.491 4.491 16 H 0.094 0.906 17 C -0.146 4.146 18 N -0.439 5.439 19 Si 0.741 3.259 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.225 4.225 24 C -0.105 4.105 25 C 0.284 3.716 26 O -0.398 6.398 27 H 0.112 0.888 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.140 0.860 34 H 0.239 0.761 35 H 0.111 0.889 36 H 0.151 0.849 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.829 16.319 -9.247 20.731 hybrid contribution -0.052 -0.358 -0.238 0.432 sum -8.880 15.961 -9.484 20.581 Atomic orbital electron populations 1.21802 0.78618 1.05004 1.01481 1.47287 1.07728 1.05791 1.73371 1.22222 0.93522 0.85365 1.03401 1.23097 0.92614 0.91925 0.96100 1.88380 1.60307 1.13115 1.63581 1.22259 0.89228 0.87593 1.01355 0.86462 1.19237 0.81710 0.82991 0.86206 1.90732 1.37898 1.79851 1.29467 1.42819 1.47361 1.05041 1.32273 1.17258 1.12547 0.89386 0.89424 1.20307 1.02332 0.93094 0.98025 1.21190 1.01282 0.99367 0.94251 1.17727 0.88659 0.91050 0.92759 1.19496 1.20234 1.11283 0.98114 0.90611 1.25879 0.96250 0.96814 0.95614 1.69765 1.26903 1.32421 1.14824 0.86193 0.78462 0.80223 0.81063 1.19558 1.20330 1.18743 1.20802 1.09501 0.93730 0.98420 1.20395 0.99955 0.98629 0.91504 1.20487 0.90486 0.83905 0.76697 1.90758 1.66729 1.33407 1.48928 0.88802 0.91888 0.91905 0.89295 0.90259 0.91636 0.85955 0.76124 0.88937 0.84941 0.91175 0.88541 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 10.58 59.84 0.63 1.23 16 2 N -0.61 -6.22 3.23 -182.30 -0.59 -6.80 16 3 C 0.08 0.53 6.69 -4.25 -0.03 0.50 16 4 C 0.04 0.29 6.90 37.17 0.26 0.55 16 5 O -0.34 -4.51 10.02 -55.14 -0.55 -5.07 16 6 C 0.06 0.85 3.32 -29.21 -0.10 0.76 16 7 H 0.12 1.30 8.14 -51.93 -0.42 0.87 16 8 C 0.52 10.02 6.89 -10.99 -0.08 9.94 16 9 O -0.50 -11.81 13.92 -14.36 -0.20 -12.01 16 10 N -0.63 -12.45 4.92 -9.74 -0.05 -12.50 16 11 C 0.01 0.14 6.31 -83.57 -0.53 -0.39 16 12 C -0.12 -2.80 9.90 -39.79 -0.39 -3.19 16 13 C -0.14 -3.73 8.61 -39.26 -0.34 -4.06 16 14 C 0.10 2.77 5.55 -106.80 -0.59 2.18 16 15 C -0.46 -12.56 9.02 -37.85 -0.34 -12.90 16 16 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 17 C 0.07 1.79 5.42 -17.34 -0.09 1.69 16 18 N -0.81 -21.46 10.59 55.55 0.59 -20.87 16 19 Si 0.92 19.36 29.56 -169.99 -5.03 14.33 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 23 C -0.20 -5.38 9.74 -39.26 -0.38 -5.77 16 24 C -0.08 -2.15 8.61 -39.79 -0.34 -2.50 16 25 C 0.50 6.81 7.13 -11.56 -0.08 6.73 16 26 O -0.52 -8.49 14.27 5.56 0.08 -8.41 16 27 H 0.09 0.95 6.71 -51.93 -0.35 0.60 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.32 8.13 -51.93 -0.42 -0.10 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.37 8.10 -51.92 -0.42 -0.05 16 33 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.40 6.91 7.71 -40.82 -0.31 6.59 16 35 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 36 H 0.13 3.59 6.13 -52.49 -0.32 3.27 16 37 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 38 H 0.10 2.40 8.06 -52.48 -0.42 1.98 16 39 H 0.11 2.68 6.22 -52.49 -0.33 2.36 16 LS Contribution 328.47 15.07 4.95 4.95 Total: -1.00 -34.23 328.47 -7.86 -42.10 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -4.66 Total: 9.52 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -2.41 Total: -5.23 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: -0.05 Total: -40.18 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.67 Total: -25.49 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.23 -7.86 -42.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899987939.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.287 kcal (2) G-P(sol) polarization free energy of solvation -34.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds