Wall clock time and date at job start Fri Apr 10 2020 17:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46096 * 118.73021 * 2 1 4 4 C 1.53020 * 109.92740 * 198.38159 * 3 2 1 5 5 O 1.43235 * 108.68147 * 310.85858 * 4 3 2 6 6 C 1.42962 * 112.99626 * 68.34365 * 5 4 3 7 7 H 1.09003 * 109.40891 * 70.50495 * 6 5 4 8 8 C 1.50691 * 109.36200 * 190.33091 * 6 5 4 9 9 O 1.21287 * 120.00146 * 5.17744 * 8 6 5 10 10 N 1.34777 * 120.00158 * 185.17199 * 8 6 5 11 11 C 1.39244 * 120.00040 * 175.71938 * 10 8 6 12 12 C 1.39484 * 119.82985 * 214.99129 * 11 10 8 13 13 C 1.36371 * 120.16376 * 179.71587 * 12 11 10 14 14 C 1.40875 * 119.82998 * 0.55869 * 13 12 11 15 15 C 1.41150 * 120.16595 * 179.73872 * 14 13 12 16 16 H 1.07997 * 120.00258 * 214.78339 * 15 14 13 17 17 C 1.39907 * 119.99850 * 34.78087 * 15 14 13 18 18 N 1.30873 * 120.00044 * 355.51430 * 17 15 14 19 19 Si 1.86798 * 119.99859 * 175.51636 * 17 15 14 20 20 H 1.48501 * 109.47125 * 90.00016 * 19 17 15 21 21 H 1.48500 * 109.46858 * 209.99787 * 19 17 15 22 22 H 1.48494 * 109.47285 * 329.99823 * 19 17 15 23 23 C 1.40868 * 119.66812 * 359.71638 * 14 13 12 24 24 C 1.36370 * 119.83180 * 0.02562 * 23 14 13 25 25 C 1.33872 * 118.73073 * 180.02562 * 2 1 3 26 26 O 1.21278 * 118.83539 * 358.09383 * 25 2 1 27 27 H 1.09002 * 109.47277 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47224 * 299.97417 * 1 2 3 29 29 H 1.09002 * 109.47490 * 59.97334 * 1 2 3 30 30 H 1.08993 * 109.39516 * 318.52305 * 3 2 1 31 31 H 1.09000 * 109.39125 * 78.24928 * 3 2 1 32 32 H 1.09009 * 109.60182 * 70.59076 * 4 3 2 33 33 H 1.08994 * 109.60914 * 190.92007 * 4 3 2 34 34 H 0.97001 * 119.99988 * 355.72096 * 10 8 6 35 35 H 1.07996 * 119.91555 * 0.02562 * 12 11 10 36 36 H 1.08001 * 120.08459 * 180.26988 * 13 12 11 37 37 H 0.97001 * 120.00083 * 180.02562 * 18 17 15 38 38 H 1.08010 * 120.07978 * 180.02562 * 23 14 13 39 39 H 1.07997 * 119.91622 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1672 1.2811 0.0000 4 6 3.6150 1.0822 -0.4536 5 8 4.1835 -0.0028 0.2888 6 6 3.6083 -1.2687 -0.0433 7 1 3.9246 -1.5586 -1.0454 8 6 4.0733 -2.3042 0.9478 9 8 4.7454 -1.9723 1.9014 10 7 3.7423 -3.5992 0.7749 11 6 4.2451 -4.5679 1.6396 12 6 4.5575 -5.8373 1.1532 13 6 5.0557 -6.7893 1.9929 14 6 5.2437 -6.4916 3.3569 15 6 5.7538 -7.4734 4.2334 16 1 5.4096 -7.5156 5.2562 17 6 6.7054 -8.3920 3.7772 18 7 7.0577 -8.3977 2.5167 19 14 7.4730 -9.6103 4.9671 20 1 6.6565 -10.8502 5.0014 21 1 8.8510 -9.9373 4.5203 22 1 7.5219 -9.0120 6.3252 23 6 4.9205 -5.2091 3.8417 24 6 4.4280 -4.2658 2.9889 25 6 2.1084 -1.1739 -0.0005 26 8 1.4585 -2.1972 0.0344 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5134 0.8902 29 1 -0.3634 0.5142 -0.8897 30 1 1.6657 1.9687 -0.6809 31 1 2.1575 1.6991 1.0066 32 1 3.6358 0.8471 -1.5179 33 1 4.1845 1.9930 -0.2692 34 1 3.1537 -3.8564 0.0480 35 1 4.4090 -6.0652 0.1081 36 1 5.3013 -7.7704 1.6140 37 1 7.7171 -9.0348 2.2003 38 1 5.0623 -4.9736 4.8862 39 1 4.1794 -3.2822 3.3592 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899987939.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:05 Heat of formation + Delta-G solvation = -94.029898 kcal Electronic energy + Delta-G solvation = -24486.197808 eV Core-core repulsion = 20779.479259 eV Total energy + Delta-G solvation = -3706.718549 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.31478 -40.82293 -39.19392 -38.79176 -36.54482 -36.19455 -34.74137 -31.86147 -31.49790 -30.89364 -29.97848 -27.52015 -26.30155 -24.82353 -23.54953 -22.76461 -21.62034 -20.35109 -19.35102 -19.10053 -18.94068 -18.01753 -17.80832 -17.08170 -16.81059 -16.67245 -16.02550 -15.74489 -15.57263 -15.33033 -14.99986 -14.78782 -14.51122 -14.21783 -14.03519 -13.65797 -13.61861 -13.42139 -13.27283 -13.11533 -12.87773 -12.78092 -12.49135 -12.38687 -11.89294 -11.72718 -11.41754 -11.23944 -10.88834 -10.66130 -10.62043 -9.90963 -9.50545 -8.77911 -8.51425 -6.34705 0.65221 1.04038 1.11912 1.32463 1.40159 1.50444 1.56009 1.83810 1.90231 2.24615 2.77436 2.84779 3.07930 3.45973 3.66228 3.70870 3.83099 4.12231 4.28788 4.36627 4.42090 4.47220 4.57436 4.67253 4.80844 4.89169 4.90896 5.07701 5.11684 5.17143 5.29936 5.38778 5.63787 5.67286 5.86281 5.97369 6.06238 6.10594 6.35047 6.55714 6.65264 6.74048 6.94725 6.95847 7.20626 8.41596 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.036868 B = 0.002957 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.284823 B = 9467.925058 C = 9653.027898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.601 5.601 3 C 0.072 3.928 4 C 0.031 3.969 5 O -0.368 6.368 6 C 0.073 3.927 7 H 0.151 0.849 8 C 0.511 3.489 9 O -0.551 6.551 10 N -0.626 5.626 11 C 0.015 3.985 12 C -0.115 4.115 13 C -0.157 4.157 14 C 0.071 3.929 15 C -0.497 4.497 16 H 0.074 0.926 17 C 0.028 3.972 18 N -0.839 5.839 19 Si 0.991 3.009 20 H -0.259 1.259 21 H -0.268 1.268 22 H -0.263 1.263 23 C -0.220 4.220 24 C -0.097 4.097 25 C 0.492 3.508 26 O -0.559 6.559 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.133 0.867 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.150 0.850 34 H 0.418 0.582 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.286 0.714 38 H 0.098 0.902 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.778 18.343 -11.576 23.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.334 5.334 3 C -0.049 4.049 4 C -0.045 4.045 5 O -0.286 6.286 6 C 0.009 3.991 7 H 0.168 0.832 8 C 0.296 3.704 9 O -0.428 6.428 10 N -0.272 5.272 11 C -0.078 4.078 12 C -0.134 4.134 13 C -0.177 4.177 14 C 0.069 3.931 15 C -0.527 4.527 16 H 0.092 0.908 17 C -0.184 4.184 18 N -0.467 5.467 19 Si 0.812 3.188 20 H -0.184 1.184 21 H -0.193 1.193 22 H -0.187 1.187 23 C -0.240 4.240 24 C -0.117 4.117 25 C 0.278 3.722 26 O -0.439 6.439 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.151 0.849 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.168 0.832 34 H 0.256 0.744 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.352 18.029 -10.944 23.071 hybrid contribution 0.021 -0.636 0.189 0.664 sum -9.330 17.393 -10.755 22.477 Atomic orbital electron populations 1.21969 0.77320 1.04153 1.03753 1.47473 1.08736 1.05905 1.71302 1.22529 0.93402 0.84284 1.04704 1.23552 0.93073 0.90966 0.96883 1.88347 1.61211 1.13730 1.65324 1.22008 0.89721 0.86841 1.00547 0.83193 1.20171 0.80382 0.83442 0.86383 1.90702 1.39804 1.80652 1.31691 1.42782 1.47498 1.04941 1.31977 1.17351 1.10822 0.90249 0.89426 1.20554 1.01049 0.92520 0.99326 1.21191 1.02457 0.99688 0.94376 1.18040 0.89682 0.91697 0.93725 1.19732 1.21917 1.12806 0.98254 0.90822 1.26771 0.96012 0.98191 0.97469 1.69821 1.27278 1.33172 1.16381 0.85070 0.77792 0.77654 0.78329 1.18357 1.19271 1.18700 1.20919 1.10315 0.93933 0.98846 1.20474 1.00540 0.98191 0.92486 1.20413 0.90137 0.84636 0.77062 1.90741 1.67190 1.34837 1.51099 0.91238 0.90617 0.88533 0.84931 0.90287 0.89312 0.83248 0.74419 0.85627 0.85917 0.90343 0.88396 0.88009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 10.58 127.77 1.35 2.30 16 2 N -0.60 -10.67 3.23 -849.58 -2.75 -13.41 16 3 C 0.07 0.70 6.69 86.46 0.58 1.28 16 4 C 0.03 0.34 6.90 71.99 0.50 0.84 16 5 O -0.37 -9.16 10.02 -129.94 -1.30 -10.46 16 6 C 0.07 1.95 3.32 28.99 0.10 2.05 16 7 H 0.15 2.92 8.14 -2.39 -0.02 2.90 16 8 C 0.51 19.79 6.89 87.65 0.60 20.39 16 9 O -0.55 -26.31 13.92 15.98 0.22 -26.09 16 10 N -0.63 -24.63 4.92 -303.11 -1.49 -26.12 16 11 C 0.01 0.71 6.31 38.56 0.24 0.95 16 12 C -0.11 -5.49 9.90 22.13 0.22 -5.27 16 13 C -0.16 -8.54 8.61 22.48 0.19 -8.35 16 14 C 0.07 4.07 5.55 -21.28 -0.12 3.95 16 15 C -0.50 -28.04 9.02 23.39 0.21 -27.83 16 16 H 0.07 4.02 7.85 -2.91 -0.02 3.99 16 17 C 0.03 1.45 5.42 85.24 0.46 1.91 16 18 N -0.84 -45.01 10.59 21.82 0.23 -44.78 16 19 Si 0.99 39.86 29.56 68.60 2.03 41.89 16 20 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 21 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 22 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 23 C -0.22 -12.13 9.74 22.48 0.22 -11.91 16 24 C -0.10 -5.09 8.61 22.13 0.19 -4.90 16 25 C 0.49 12.69 7.13 87.69 0.62 13.31 16 26 O -0.56 -17.86 14.27 -3.02 -0.04 -17.91 16 27 H 0.07 1.34 6.71 -2.39 -0.02 1.32 16 28 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.13 0.21 8.13 -2.39 -0.02 0.19 16 31 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 0.61 8.10 -2.38 -0.02 0.59 16 33 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.42 13.99 7.71 -92.71 -0.71 13.27 16 35 H 0.13 5.08 8.06 -2.91 -0.02 5.06 16 36 H 0.12 6.85 6.13 -2.91 -0.02 6.83 16 37 H 0.29 13.87 8.30 -92.71 -0.77 13.11 16 38 H 0.10 5.16 8.06 -2.91 -0.02 5.14 16 39 H 0.10 5.38 6.22 -2.91 -0.02 5.36 16 Total: -1.00 -78.41 328.47 2.65 -75.76 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: 0.38 Total: 32.37 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 5.37 Total: -11.26 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -4.00 Total: -84.31 kcal Atomic # 8 Polarization: -53.33 SS G_CDS: -1.12 Total: -54.46 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -78.41 2.65 -75.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899987939.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.268 kcal (2) G-P(sol) polarization free energy of solvation -78.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds