Wall clock time and date at job start Fri Apr 10 2020 17:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21230 * 120.00301 * 2 1 4 4 C 1.47397 * 120.00303 * 179.97438 * 2 1 3 5 5 C 1.39825 * 120.02282 * 353.97466 * 4 2 1 6 6 C 1.37749 * 119.97147 * 179.97438 * 5 4 2 7 7 C 1.39591 * 120.02844 * 0.02562 * 6 5 4 8 8 C 1.48068 * 119.97307 * 180.02562 * 7 6 5 9 9 O 1.21526 * 120.00214 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00096 * 359.97438 * 8 7 6 11 11 C 1.46493 * 119.99835 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.47061 * 180.02562 * 11 10 8 13 13 O 1.21294 * 119.99737 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00383 * 180.02562 * 12 11 10 15 15 C 1.37100 * 120.00126 * 179.97438 * 14 12 11 16 16 H 1.07995 * 120.00232 * 0.02562 * 15 14 12 17 17 C 1.38955 * 119.99840 * 179.97438 * 15 14 12 18 18 N 1.31405 * 119.99897 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00074 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47205 * 89.99391 * 19 17 15 21 21 H 1.48493 * 109.47052 * 209.99889 * 19 17 15 22 22 H 1.48500 * 109.47249 * 329.99677 * 19 17 15 23 23 C 1.39549 * 120.05542 * 359.97325 * 7 6 5 24 24 C 1.37793 * 120.03128 * 359.79270 * 23 7 6 25 25 C 1.50695 * 120.02097 * 180.24512 * 24 23 7 26 26 H 1.08996 * 109.47227 * 240.00218 * 1 2 3 27 27 H 1.08994 * 109.47215 * 119.99994 * 1 2 3 28 28 H 1.09005 * 109.46783 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.01803 * 359.97438 * 5 4 2 30 30 H 1.07996 * 119.99199 * 180.02562 * 6 5 4 31 31 H 0.97001 * 119.99776 * 0.02562 * 10 8 7 32 32 H 1.08997 * 109.47424 * 300.00383 * 11 10 8 33 33 H 1.08997 * 109.47287 * 60.00679 * 11 10 8 34 34 H 0.96999 * 119.99637 * 0.02562 * 14 12 11 35 35 H 0.97003 * 119.99789 * 180.02562 * 18 17 15 36 36 H 1.07999 * 119.98951 * 180.02562 * 23 7 6 37 37 H 1.08995 * 109.47711 * 263.53283 * 25 24 23 38 38 H 1.09008 * 109.46888 * 23.53617 * 25 24 23 39 39 H 1.09006 * 109.46927 * 143.52887 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0499 0.0000 4 6 2.2440 -1.2765 0.0006 5 6 1.5512 -2.4843 0.1282 6 6 2.2411 -3.6766 0.1281 7 6 3.6312 -3.6794 0.0011 8 6 4.3714 -4.9617 0.0006 9 8 5.5817 -4.9647 -0.1094 10 7 3.7030 -6.1257 0.1231 11 6 4.4355 -7.3944 0.1231 12 6 3.4629 -8.5359 0.2716 13 8 2.2747 -8.3117 0.3675 14 7 3.9132 -9.8059 0.2979 15 6 3.0284 -10.8444 0.4335 16 1 1.9705 -10.6448 0.5189 17 6 3.4928 -12.1538 0.4601 18 7 2.6447 -13.1491 0.5896 19 14 5.3226 -12.4991 0.3117 20 1 5.9342 -12.5173 1.6647 21 1 5.5262 -13.8171 -0.3414 22 1 5.9620 -11.4373 -0.5062 23 6 4.3238 -2.4746 -0.1263 24 6 3.6357 -1.2808 -0.1313 25 6 4.3833 0.0198 -0.2745 26 1 -0.3633 -0.5138 0.8900 27 1 -0.3633 -0.5138 -0.8899 28 1 -0.3633 1.0277 0.0005 29 1 0.4757 -2.4825 0.2268 30 1 1.7063 -4.6097 0.2262 31 1 2.7370 -6.1233 0.2113 32 1 4.9788 -7.5003 -0.8158 33 1 5.1405 -7.4069 0.9543 34 1 4.8635 -9.9852 0.2216 35 1 2.9689 -14.0632 0.6085 36 1 5.3992 -2.4780 -0.2249 37 1 4.5571 0.4496 0.7119 38 1 5.3396 -0.1630 -0.7649 39 1 3.7941 0.7134 -0.8745 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908175531.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:15 Heat of formation + Delta-G solvation = -81.645873 kcal Electronic energy + Delta-G solvation = -23290.956751 eV Core-core repulsion = 19584.775214 eV Total energy + Delta-G solvation = -3706.181537 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.78558 -39.78731 -38.57649 -37.85129 -34.72157 -33.95322 -33.09691 -32.44705 -31.85350 -29.87565 -28.24421 -27.10154 -25.11944 -23.84222 -22.17753 -20.94237 -19.88724 -19.69609 -18.81962 -17.69738 -16.97243 -16.50215 -15.77218 -15.61419 -15.42262 -15.27443 -15.08326 -14.74451 -14.36790 -14.16892 -14.15114 -13.63285 -13.52551 -13.22010 -12.90595 -12.66054 -12.57044 -12.51423 -12.38516 -12.24861 -12.22455 -12.03748 -11.39868 -11.28315 -10.68905 -10.15373 -10.10217 -9.81474 -9.75757 -9.36878 -9.11296 -8.98438 -8.85480 -8.36539 -6.46120 -3.99009 0.04746 1.01277 1.81696 2.80756 2.95385 3.00135 3.05691 3.10541 3.47855 3.59730 3.65053 3.98819 4.36474 4.42626 4.45806 4.55890 4.70471 4.88882 4.93525 4.99948 5.08555 5.10691 5.22656 5.37687 5.49343 5.53972 5.58735 5.62301 5.69248 5.71925 5.85845 5.89576 6.00223 6.18759 6.37611 6.47860 7.14572 7.37684 7.56009 7.93636 8.16915 8.38879 8.75704 9.23703 9.56144 10.65838 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.032567 B = 0.002500 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.550154 B =11197.196062 C =12029.503635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.393 3.607 3 O -0.451 6.451 4 C -0.159 4.159 5 C -0.074 4.074 6 C -0.105 4.105 7 C -0.090 4.090 8 C 0.552 3.448 9 O -0.540 6.540 10 N -0.699 5.699 11 C 0.105 3.895 12 C 0.436 3.564 13 O -0.580 6.580 14 N -0.574 5.574 15 C -0.311 4.311 16 H 0.122 0.878 17 C 0.046 3.954 18 N -0.872 5.872 19 Si 0.879 3.121 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.267 1.267 23 C -0.077 4.077 24 C -0.034 4.034 25 C -0.121 4.121 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.412 0.588 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.375 0.625 35 H 0.276 0.724 36 H 0.143 0.857 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.047 22.676 -1.534 22.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.272 3.728 3 O -0.327 6.327 4 C -0.160 4.160 5 C -0.092 4.092 6 C -0.124 4.124 7 C -0.094 4.094 8 C 0.338 3.662 9 O -0.419 6.419 10 N -0.354 5.354 11 C -0.022 4.022 12 C 0.222 3.778 13 O -0.465 6.465 14 N -0.211 5.211 15 C -0.440 4.440 16 H 0.140 0.860 17 C -0.159 4.159 18 N -0.511 5.511 19 Si 0.705 3.295 20 H -0.193 1.193 21 H -0.199 1.199 22 H -0.192 1.192 23 C -0.096 4.096 24 C -0.035 4.035 25 C -0.177 4.177 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.104 0.896 29 H 0.158 0.842 30 H 0.157 0.843 31 H 0.252 0.748 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.208 0.792 35 H 0.087 0.913 36 H 0.161 0.839 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.277 23.065 -1.529 23.117 hybrid contribution 0.866 -0.883 -0.037 1.237 sum 1.142 22.182 -1.566 22.266 Atomic orbital electron populations 1.22266 0.93477 1.05253 1.04799 1.22562 0.91721 0.87462 0.71097 1.90498 1.71599 1.34529 1.36075 1.20521 0.94050 0.95080 1.06386 1.21358 1.00352 0.90902 0.96628 1.21413 0.93112 0.99093 0.98789 1.20195 0.93910 0.93686 1.01570 1.18256 0.87128 0.83610 0.77163 1.90763 1.13571 1.87510 1.50029 1.45621 1.12290 1.04703 1.72756 1.21031 0.94582 0.83057 1.03574 1.19583 0.89162 0.83672 0.85338 1.90534 1.16547 1.83603 1.55783 1.42120 1.08873 1.05629 1.64513 1.19441 0.92883 0.83591 1.48063 0.86029 1.25075 0.98523 0.95234 0.97036 1.69613 1.34416 0.99526 1.47544 0.86670 0.84548 0.79116 0.79162 1.19349 1.19924 1.19212 1.21181 1.01031 0.89989 0.97387 1.20180 0.92499 0.95931 0.94871 1.21097 0.99530 0.93788 1.03333 0.88622 0.88649 0.89634 0.84248 0.84306 0.74807 0.89405 0.89393 0.79196 0.91314 0.83946 0.90434 0.91796 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.00 9.01 36.00 0.32 -0.68 16 2 C 0.39 3.37 7.16 -30.58 -0.22 3.15 16 3 O -0.45 -5.03 14.06 5.60 0.08 -4.95 16 4 C -0.16 -1.49 5.87 -105.00 -0.62 -2.10 16 5 C -0.07 -0.61 9.45 -39.17 -0.37 -0.98 16 6 C -0.11 -1.06 9.52 -39.26 -0.37 -1.44 16 7 C -0.09 -1.11 5.88 -104.87 -0.62 -1.73 16 8 C 0.55 8.28 7.78 -12.23 -0.10 8.18 16 9 O -0.54 -9.50 16.33 5.34 0.09 -9.41 16 10 N -0.70 -10.71 5.48 -62.36 -0.34 -11.05 16 11 C 0.11 1.75 6.15 -5.20 -0.03 1.71 16 12 C 0.44 9.25 7.85 -10.99 -0.09 9.16 16 13 O -0.58 -14.06 15.24 5.55 0.08 -13.98 16 14 N -0.57 -12.97 5.09 -10.96 -0.06 -13.02 16 15 C -0.31 -8.38 10.16 -14.93 -0.15 -8.54 16 16 H 0.12 3.73 7.39 -52.49 -0.39 3.34 16 17 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 18 N -0.87 -24.47 13.96 55.50 0.77 -23.70 16 19 Si 0.88 18.61 27.74 -169.99 -4.71 13.89 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.27 -5.16 6.52 56.52 0.37 -4.79 16 23 C -0.08 -0.89 9.20 -39.26 -0.36 -1.25 16 24 C -0.03 -0.36 5.91 -104.21 -0.62 -0.98 16 25 C -0.12 -1.13 8.71 36.00 0.31 -0.82 16 26 H 0.10 0.33 7.90 -51.93 -0.41 -0.08 16 27 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 29 H 0.14 0.71 6.97 -52.49 -0.37 0.35 16 30 H 0.14 1.28 6.38 -52.49 -0.34 0.94 16 31 H 0.41 6.08 5.46 -40.82 -0.22 5.86 16 32 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.37 7.45 5.76 -40.82 -0.24 7.22 16 35 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.14 1.62 7.63 -52.49 -0.40 1.22 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.51 8.04 -51.92 -0.42 0.10 16 39 H 0.09 0.90 5.85 -51.93 -0.30 0.60 16 LS Contribution 337.18 15.07 5.08 5.08 Total: -1.00 -32.94 337.18 -6.36 -39.30 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -4.36 Total: 13.02 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -3.00 Total: 4.81 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.38 Total: -47.77 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: 0.25 Total: -28.34 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -4.71 Total: 13.89 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.94 -6.36 -39.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908175531.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.343 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds