Wall clock time and date at job start Fri Apr 10 2020 17:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21230 * 120.00301 * 2 1 4 4 C 1.47397 * 120.00303 * 179.97438 * 2 1 3 5 5 C 1.39825 * 120.02282 * 353.97466 * 4 2 1 6 6 C 1.37749 * 119.97147 * 179.97438 * 5 4 2 7 7 C 1.39591 * 120.02844 * 0.02562 * 6 5 4 8 8 C 1.48068 * 119.97307 * 180.02562 * 7 6 5 9 9 O 1.21526 * 120.00214 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00096 * 359.97438 * 8 7 6 11 11 C 1.46493 * 119.99835 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.47061 * 180.02562 * 11 10 8 13 13 O 1.21294 * 119.99737 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00383 * 180.02562 * 12 11 10 15 15 C 1.37100 * 120.00126 * 179.97438 * 14 12 11 16 16 H 1.07995 * 120.00232 * 0.02562 * 15 14 12 17 17 C 1.38955 * 119.99840 * 179.97438 * 15 14 12 18 18 N 1.31405 * 119.99897 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00074 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47205 * 89.99391 * 19 17 15 21 21 H 1.48493 * 109.47052 * 209.99889 * 19 17 15 22 22 H 1.48500 * 109.47249 * 329.99677 * 19 17 15 23 23 C 1.39549 * 120.05542 * 359.97325 * 7 6 5 24 24 C 1.37793 * 120.03128 * 359.79270 * 23 7 6 25 25 C 1.50695 * 120.02097 * 180.24512 * 24 23 7 26 26 H 1.08996 * 109.47227 * 240.00218 * 1 2 3 27 27 H 1.08994 * 109.47215 * 119.99994 * 1 2 3 28 28 H 1.09005 * 109.46783 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.01803 * 359.97438 * 5 4 2 30 30 H 1.07996 * 119.99199 * 180.02562 * 6 5 4 31 31 H 0.97001 * 119.99776 * 0.02562 * 10 8 7 32 32 H 1.08997 * 109.47424 * 300.00383 * 11 10 8 33 33 H 1.08997 * 109.47287 * 60.00679 * 11 10 8 34 34 H 0.96999 * 119.99637 * 0.02562 * 14 12 11 35 35 H 0.97003 * 119.99789 * 180.02562 * 18 17 15 36 36 H 1.07999 * 119.98951 * 180.02562 * 23 7 6 37 37 H 1.08995 * 109.47711 * 263.53283 * 25 24 23 38 38 H 1.09008 * 109.46888 * 23.53617 * 25 24 23 39 39 H 1.09006 * 109.46927 * 143.52887 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0499 0.0000 4 6 2.2440 -1.2765 0.0006 5 6 1.5512 -2.4843 0.1282 6 6 2.2411 -3.6766 0.1281 7 6 3.6312 -3.6794 0.0011 8 6 4.3714 -4.9617 0.0006 9 8 5.5817 -4.9647 -0.1094 10 7 3.7030 -6.1257 0.1231 11 6 4.4355 -7.3944 0.1231 12 6 3.4629 -8.5359 0.2716 13 8 2.2747 -8.3117 0.3675 14 7 3.9132 -9.8059 0.2979 15 6 3.0284 -10.8444 0.4335 16 1 1.9705 -10.6448 0.5189 17 6 3.4928 -12.1538 0.4601 18 7 2.6447 -13.1491 0.5896 19 14 5.3226 -12.4991 0.3117 20 1 5.9342 -12.5173 1.6647 21 1 5.5262 -13.8171 -0.3414 22 1 5.9620 -11.4373 -0.5062 23 6 4.3238 -2.4746 -0.1263 24 6 3.6357 -1.2808 -0.1313 25 6 4.3833 0.0198 -0.2745 26 1 -0.3633 -0.5138 0.8900 27 1 -0.3633 -0.5138 -0.8899 28 1 -0.3633 1.0277 0.0005 29 1 0.4757 -2.4825 0.2268 30 1 1.7063 -4.6097 0.2262 31 1 2.7370 -6.1233 0.2113 32 1 4.9788 -7.5003 -0.8158 33 1 5.1405 -7.4069 0.9543 34 1 4.8635 -9.9852 0.2216 35 1 2.9689 -14.0632 0.6085 36 1 5.3992 -2.4780 -0.2249 37 1 4.5571 0.4496 0.7119 38 1 5.3396 -0.1630 -0.7649 39 1 3.7941 0.7134 -0.8745 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908175531.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:14 Heat of formation + Delta-G solvation = -105.137477 kcal Electronic energy + Delta-G solvation = -23291.975424 eV Core-core repulsion = 19584.775214 eV Total energy + Delta-G solvation = -3707.200210 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.68397 -40.89460 -40.10353 -38.82282 -36.34587 -35.51295 -33.94710 -33.80430 -33.22184 -30.49651 -29.61603 -27.88573 -26.62720 -25.08875 -22.99131 -21.86238 -21.50515 -20.79348 -20.51420 -18.95095 -17.82979 -17.55942 -17.24191 -16.86075 -16.69268 -16.39343 -16.18773 -15.81420 -15.59934 -15.31641 -15.10340 -14.91268 -14.42469 -14.38906 -14.20403 -14.01957 -13.73818 -13.69514 -13.26955 -13.01961 -13.00506 -12.93594 -12.81892 -12.44910 -12.14922 -12.00760 -11.58567 -11.30959 -10.67724 -10.53425 -10.40793 -10.31740 -10.06963 -9.86904 -8.45848 -6.07782 -0.76984 0.24261 1.03632 1.30970 1.33937 1.43691 1.76589 1.85733 1.86489 2.20201 2.72197 2.82974 3.01870 3.10516 3.53747 3.64577 3.74515 3.97070 4.07528 4.14881 4.24504 4.34965 4.37930 4.50110 4.57555 4.69817 4.72708 4.75921 4.86568 5.05314 5.11440 5.14619 5.16943 5.23456 5.44937 5.47608 5.69533 5.87714 6.36335 6.47540 6.50887 6.77599 6.98076 7.28428 7.76338 8.70350 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.032567 B = 0.002500 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.550154 B =11197.196062 C =12029.503635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.393 3.607 3 O -0.482 6.482 4 C -0.161 4.161 5 C -0.060 4.060 6 C -0.107 4.107 7 C -0.109 4.109 8 C 0.556 3.444 9 O -0.569 6.569 10 N -0.701 5.701 11 C 0.115 3.885 12 C 0.445 3.555 13 O -0.612 6.612 14 N -0.577 5.577 15 C -0.331 4.331 16 H 0.066 0.934 17 C -0.008 4.008 18 N -0.925 5.925 19 Si 0.957 3.043 20 H -0.257 1.257 21 H -0.274 1.274 22 H -0.232 1.232 23 C -0.085 4.085 24 C -0.046 4.046 25 C -0.117 4.117 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.086 0.914 29 H 0.179 0.821 30 H 0.147 0.853 31 H 0.415 0.585 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.392 0.608 35 H 0.281 0.719 36 H 0.136 0.864 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.725 23.954 -1.766 24.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.274 3.726 3 O -0.360 6.360 4 C -0.163 4.163 5 C -0.077 4.077 6 C -0.125 4.125 7 C -0.112 4.112 8 C 0.344 3.656 9 O -0.450 6.450 10 N -0.355 5.355 11 C -0.012 4.012 12 C 0.233 3.767 13 O -0.498 6.498 14 N -0.217 5.217 15 C -0.460 4.460 16 H 0.084 0.916 17 C -0.208 4.208 18 N -0.564 5.564 19 Si 0.777 3.223 20 H -0.181 1.181 21 H -0.199 1.199 22 H -0.156 1.156 23 C -0.104 4.104 24 C -0.046 4.046 25 C -0.173 4.173 26 H 0.135 0.865 27 H 0.134 0.866 28 H 0.105 0.895 29 H 0.196 0.804 30 H 0.165 0.835 31 H 0.255 0.745 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.228 0.772 35 H 0.091 0.909 36 H 0.154 0.846 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.039 24.369 -1.764 24.455 hybrid contribution 0.470 -1.156 0.047 1.249 sum 1.509 23.213 -1.717 23.325 Atomic orbital electron populations 1.22313 0.90199 1.06109 1.06689 1.23052 0.93370 0.86432 0.69773 1.90499 1.72572 1.35353 1.37611 1.20838 0.93791 0.96238 1.05391 1.21718 1.02089 0.89470 0.94455 1.21571 0.92235 1.00298 0.98414 1.20059 0.94819 0.92382 1.03901 1.18602 0.86851 0.84114 0.76033 1.90741 1.14842 1.87933 1.51480 1.45626 1.12401 1.04457 1.73035 1.20956 0.93381 0.81493 1.05376 1.20427 0.89451 0.84280 0.82567 1.90522 1.18631 1.84342 1.56326 1.41930 1.09122 1.05155 1.65502 1.19032 0.91399 0.85561 1.49962 0.91631 1.26053 1.04688 0.94234 0.95794 1.69773 1.37496 1.00267 1.48896 0.85464 0.76959 0.79704 0.80130 1.18145 1.19918 1.15576 1.21157 1.00891 0.90271 0.98037 1.20350 0.93396 0.95763 0.95124 1.21057 0.99788 0.93241 1.03262 0.86450 0.86632 0.89495 0.80406 0.83506 0.74492 0.87490 0.87410 0.77219 0.90920 0.84578 0.90518 0.90965 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.27 9.01 71.24 0.64 -0.63 16 2 C 0.39 5.89 7.16 28.10 0.20 6.09 16 3 O -0.48 -10.25 14.06 -2.88 -0.04 -10.29 16 4 C -0.16 -2.69 5.87 -20.11 -0.12 -2.81 16 5 C -0.06 -0.80 9.45 22.54 0.21 -0.59 16 6 C -0.11 -1.94 9.52 22.48 0.21 -1.73 16 7 C -0.11 -2.56 5.88 -20.03 -0.12 -2.68 16 8 C 0.56 16.11 7.78 86.85 0.68 16.79 16 9 O -0.57 -19.52 16.33 -3.80 -0.06 -19.58 16 10 N -0.70 -20.53 5.48 -469.50 -2.57 -23.10 16 11 C 0.12 3.60 6.15 85.64 0.53 4.13 16 12 C 0.45 18.58 7.85 87.66 0.69 19.27 16 13 O -0.61 -30.03 15.24 -3.07 -0.05 -30.08 16 14 N -0.58 -25.68 5.09 -306.98 -1.56 -27.24 16 15 C -0.33 -18.29 10.16 84.04 0.85 -17.43 16 16 H 0.07 4.28 7.39 -2.91 -0.02 4.26 16 17 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 18 N -0.92 -53.40 13.96 21.66 0.30 -53.10 16 19 Si 0.96 37.29 27.74 68.60 1.90 39.20 16 20 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 21 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 22 H -0.23 -7.69 6.52 99.48 0.65 -7.04 16 23 C -0.08 -1.91 9.20 22.48 0.21 -1.70 16 24 C -0.05 -0.92 5.91 -19.60 -0.12 -1.04 16 25 C -0.12 -2.14 8.71 71.23 0.62 -1.52 16 26 H 0.12 0.30 7.90 -2.39 -0.02 0.28 16 27 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.09 0.60 8.12 -2.38 -0.02 0.58 16 29 H 0.18 0.98 6.97 -2.91 -0.02 0.96 16 30 H 0.15 2.41 6.38 -2.91 -0.02 2.40 16 31 H 0.42 11.81 5.46 -92.71 -0.51 11.30 16 32 H 0.11 3.01 8.14 -2.39 -0.02 3.00 16 33 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 34 H 0.39 14.60 5.76 -92.71 -0.53 14.07 16 35 H 0.28 14.85 8.31 -92.71 -0.77 14.08 16 36 H 0.14 3.14 7.63 -2.91 -0.02 3.12 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.07 1.15 8.04 -2.38 -0.02 1.13 16 39 H 0.08 1.67 5.85 -2.38 -0.01 1.66 16 Total: -1.00 -75.22 337.18 2.90 -72.32 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: 0.02 Total: 35.67 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 4.96 Total: 16.22 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -3.83 Total: -103.44 kcal Atomic # 8 Polarization: -59.81 SS G_CDS: -0.15 Total: -59.96 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 1.90 Total: 39.20 kcal Total: -75.22 2.90 -72.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908175531.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.817 kcal (2) G-P(sol) polarization free energy of solvation -75.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds