Wall clock time and date at job start Fri Apr 10 2020 17:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99883 * 2 1 4 4 H 1.48495 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47081 * 300.00032 * 3 2 1 6 6 H 1.48496 * 109.47315 * 59.99967 * 3 2 1 7 7 C 1.38698 * 120.00417 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00037 * 180.02562 * 7 2 1 9 9 O 1.34815 * 119.99396 * 0.02562 * 7 2 1 10 10 C 1.35523 * 116.99815 * 185.35591 * 9 7 2 11 11 C 1.38842 * 120.16016 * 6.18684 * 10 9 7 12 12 C 1.38018 * 120.06949 * 180.25016 * 11 10 9 13 13 C 1.38570 * 120.40473 * 359.76699 * 12 11 10 14 14 C 1.37831 * 120.32420 * 359.97438 * 13 12 11 15 15 C 1.39665 * 119.91772 * 359.97438 * 14 13 12 16 16 C 1.47532 * 120.19756 * 180.02562 * 15 14 13 17 17 O 1.21596 * 120.00250 * 226.15908 * 16 15 14 18 18 N 1.34780 * 119.99754 * 46.16732 * 16 15 14 19 19 C 1.47014 * 125.64914 * 356.04877 * 18 16 15 20 20 C 1.54330 * 107.27189 * 178.96558 * 19 18 16 21 21 C 1.55161 * 102.93914 * 337.80741 * 20 19 18 22 22 H 1.09004 * 111.00193 * 277.42522 * 21 20 19 23 23 C 1.50698 * 111.00088 * 153.57676 * 21 20 19 24 24 N 1.34769 * 120.00153 * 179.97438 * 23 21 20 25 25 O 1.21287 * 120.00292 * 0.02562 * 23 21 20 26 26 C 1.47427 * 125.64573 * 176.08189 * 18 16 15 27 27 H 0.96997 * 120.00054 * 359.97438 * 1 2 3 28 28 H 1.07994 * 119.96076 * 359.97438 * 11 10 9 29 29 H 1.08002 * 119.80196 * 179.74312 * 12 11 10 30 30 H 1.07997 * 119.84262 * 179.97438 * 13 12 11 31 31 H 1.07997 * 120.04394 * 179.97438 * 14 13 12 32 32 H 1.09004 * 109.88177 * 59.54924 * 19 18 16 33 33 H 1.09003 * 110.01324 * 298.45507 * 19 18 16 34 34 H 1.09000 * 110.71786 * 219.44353 * 20 19 18 35 35 H 1.08994 * 110.87314 * 96.24540 * 20 19 18 36 36 H 0.97005 * 120.00203 * 0.02562 * 24 23 21 37 37 H 0.96997 * 120.00541 * 179.97438 * 24 23 21 38 38 H 1.08989 * 110.37225 * 85.26386 * 26 18 16 39 39 H 1.09004 * 110.36495 * 322.93886 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0088 -1.2011 0.0005 8 1 3.0887 -1.2010 0.0010 9 8 1.3347 -2.3686 0.0005 10 6 2.0682 -3.5025 0.1138 11 6 3.4341 -3.4289 0.3517 12 6 4.1802 -4.5849 0.4616 13 6 3.5739 -5.8250 0.3406 14 6 2.2182 -5.9174 0.1097 15 6 1.4501 -4.7563 -0.0028 16 6 -0.0016 -4.8480 -0.2494 17 8 -0.5198 -4.1467 -1.0968 18 7 -0.7534 -5.7090 0.4648 19 6 -0.2477 -6.6688 1.4570 20 6 -1.4678 -7.4180 2.0329 21 6 -2.6413 -6.4448 1.7441 22 1 -2.7041 -5.6707 2.5090 23 6 -3.9451 -7.1911 1.6255 24 7 -5.0861 -6.5187 1.3756 25 8 -3.9679 -8.3967 1.7560 26 6 -2.2189 -5.8447 0.3799 27 1 -0.4850 0.8400 0.0004 28 1 3.9139 -2.4661 0.4464 29 1 5.2431 -4.5225 0.6425 30 1 4.1665 -6.7237 0.4278 31 1 1.7505 -6.8862 0.0158 32 1 0.2719 -6.1381 2.2548 33 1 0.4303 -7.3763 0.9797 34 1 -1.3525 -7.5757 3.1053 35 1 -1.6187 -8.3673 1.5191 36 1 -5.0680 -5.5544 1.2716 37 1 -5.9253 -6.9990 1.2989 38 1 -2.4911 -6.5191 -0.4318 39 1 -2.6825 -4.8688 0.2350 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919815404.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:27 Heat of formation + Delta-G solvation = -66.567319 kcal Electronic energy + Delta-G solvation = -24694.256865 eV Core-core repulsion = 20988.729183 eV Total energy + Delta-G solvation = -3705.527682 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.38510 -39.47503 -38.34540 -36.53676 -36.37271 -33.87758 -32.38651 -31.81623 -30.28219 -29.00160 -28.96131 -25.49170 -24.71472 -22.75331 -22.03529 -21.47889 -20.08020 -19.31904 -18.10718 -17.69912 -17.35125 -16.88735 -16.33990 -15.64867 -15.21933 -14.97704 -14.66465 -14.48636 -14.02474 -13.77453 -13.61948 -13.55345 -13.36536 -13.24069 -12.64949 -12.48136 -12.19246 -11.77863 -11.58495 -11.38327 -11.35843 -11.11308 -10.95049 -10.93587 -10.66574 -10.45706 -10.16633 -9.89955 -9.65568 -9.10342 -8.90964 -8.34915 -8.23944 -7.35939 -6.51014 -4.10013 1.76829 2.27552 2.39652 3.09211 3.09913 3.15015 3.15891 3.46919 3.54136 3.90047 4.26614 4.46294 4.54293 4.77990 5.03613 5.05245 5.07924 5.20838 5.27946 5.32679 5.48722 5.67920 5.68996 5.81615 5.82887 5.90360 6.00241 6.10665 6.14562 6.49996 6.55310 6.57027 6.71508 6.92800 7.03237 7.10117 7.22059 7.25692 7.65532 7.86685 7.95141 8.04845 8.84629 8.92044 9.60544 10.64939 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.014989 B = 0.004325 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.630492 B = 6472.035263 C = 7980.307856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.397 4.397 8 H 0.095 0.905 9 O -0.147 6.147 10 C 0.189 3.811 11 C -0.235 4.235 12 C -0.054 4.054 13 C -0.224 4.224 14 C -0.044 4.044 15 C -0.216 4.216 16 C 0.591 3.409 17 O -0.513 6.513 18 N -0.624 5.624 19 C 0.101 3.899 20 C -0.111 4.111 21 C -0.131 4.131 22 H 0.113 0.887 23 C 0.534 3.466 24 N -0.854 5.854 25 O -0.543 6.543 26 C 0.124 3.876 27 H 0.271 0.729 28 H 0.132 0.868 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.405 0.595 37 H 0.401 0.599 38 H 0.066 0.934 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.881 -10.866 5.097 12.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.473 4.473 8 H 0.112 0.888 9 O -0.047 6.047 10 C 0.131 3.869 11 C -0.254 4.254 12 C -0.072 4.072 13 C -0.243 4.243 14 C -0.062 4.062 15 C -0.221 4.221 16 C 0.382 3.618 17 O -0.387 6.387 18 N -0.361 5.361 19 C -0.022 4.022 20 C -0.150 4.150 21 C -0.153 4.153 22 H 0.131 0.869 23 C 0.318 3.682 24 N -0.417 5.417 25 O -0.419 6.419 26 C 0.001 3.999 27 H 0.081 0.919 28 H 0.150 0.850 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.135 0.865 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.234 0.766 37 H 0.232 0.768 38 H 0.084 0.916 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.382 -10.920 4.647 12.340 hybrid contribution 0.165 1.140 0.034 1.152 sum -3.217 -9.780 4.681 11.309 Atomic orbital electron populations 1.70078 1.06052 1.27729 1.43938 1.25358 0.95831 0.98967 0.96151 0.85631 0.79201 0.80152 0.78351 1.18943 1.19976 1.20051 1.21469 0.91901 0.80761 1.53171 0.88776 1.84037 1.34093 1.11353 1.75209 1.19205 0.90066 0.86918 0.90686 1.21141 0.93805 0.99333 1.11109 1.20901 0.98564 0.92281 0.95492 1.20487 0.94565 0.96972 1.12281 1.20855 0.93865 0.95775 0.95735 1.18647 0.92300 0.92027 1.19081 1.17887 0.86243 0.77646 0.80071 1.90823 1.73707 1.41799 1.32378 1.48325 1.06312 1.39084 1.42413 1.22155 0.96480 0.91554 0.91982 1.22565 0.91687 0.98305 1.02400 1.22578 0.92773 0.99636 1.00318 0.86872 1.20267 0.85538 0.87541 0.74837 1.43902 1.10066 1.12412 1.75302 1.90736 1.86888 1.14378 1.49930 1.21922 0.82333 1.01339 0.94317 0.91900 0.85016 0.87120 0.87141 0.86476 0.90925 0.90951 0.89608 0.89221 0.76595 0.76846 0.91558 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.89 13.67 55.48 0.76 -24.13 16 2 C 0.04 1.19 5.49 -17.52 -0.10 1.09 16 3 Si 0.94 20.24 29.55 -169.99 -5.02 15.22 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 5 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.40 -11.07 9.44 30.90 0.29 -10.78 16 8 H 0.09 2.39 5.31 -52.49 -0.28 2.12 16 9 O -0.15 -4.26 8.71 -11.26 -0.10 -4.36 16 10 C 0.19 4.62 6.63 -38.59 -0.26 4.36 16 11 C -0.23 -4.96 9.12 -39.44 -0.36 -5.32 16 12 C -0.05 -0.93 10.03 -39.54 -0.40 -1.33 16 13 C -0.22 -3.62 10.02 -39.61 -0.40 -4.02 16 14 C -0.04 -0.76 8.51 -39.20 -0.33 -1.09 16 15 C -0.22 -4.67 5.45 -104.81 -0.57 -5.24 16 16 C 0.59 13.06 7.17 -12.47 -0.09 12.97 16 17 O -0.51 -13.68 16.69 -6.77 -0.11 -13.79 16 18 N -0.62 -10.55 3.33 -171.74 -0.57 -11.12 16 19 C 0.10 1.31 5.63 -3.07 -0.02 1.30 16 20 C -0.11 -1.22 6.08 -24.89 -0.15 -1.37 16 21 C -0.13 -1.45 3.43 -89.62 -0.31 -1.76 16 22 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 23 C 0.53 5.96 7.42 -10.99 -0.08 5.88 16 24 N -0.85 -6.58 8.87 31.22 0.28 -6.30 16 25 O -0.54 -7.93 16.55 5.55 0.09 -7.84 16 26 C 0.12 1.74 6.35 -2.53 -0.02 1.73 16 27 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.13 2.75 5.72 -52.49 -0.30 2.45 16 29 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.12 1.68 5.84 -52.49 -0.31 1.37 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.85 5.91 -51.93 -0.31 0.54 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.02 7.38 -51.93 -0.38 0.64 16 36 H 0.41 2.37 8.83 -40.82 -0.36 2.01 16 37 H 0.40 2.56 8.93 -40.82 -0.36 2.20 16 38 H 0.07 0.90 8.03 -51.93 -0.42 0.49 16 39 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 LS Contribution 332.34 15.07 5.01 5.01 Total: -1.00 -36.47 332.34 -6.84 -43.30 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -4.39 Total: 7.58 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -2.78 Total: -3.58 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.46 Total: -41.55 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.12 Total: -25.99 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.47 -6.84 -43.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919815404.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.264 kcal (2) G-P(sol) polarization free energy of solvation -36.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds