Wall clock time and date at job start Fri Apr 10 2020 17:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99883 * 2 1 4 4 H 1.48495 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47081 * 300.00032 * 3 2 1 6 6 H 1.48496 * 109.47315 * 59.99967 * 3 2 1 7 7 C 1.38698 * 120.00417 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00037 * 180.02562 * 7 2 1 9 9 O 1.34815 * 119.99396 * 0.02562 * 7 2 1 10 10 C 1.35523 * 116.99815 * 185.35591 * 9 7 2 11 11 C 1.38842 * 120.16016 * 6.18684 * 10 9 7 12 12 C 1.38018 * 120.06949 * 180.25016 * 11 10 9 13 13 C 1.38570 * 120.40473 * 359.76699 * 12 11 10 14 14 C 1.37831 * 120.32420 * 359.97438 * 13 12 11 15 15 C 1.39665 * 119.91772 * 359.97438 * 14 13 12 16 16 C 1.47532 * 120.19756 * 180.02562 * 15 14 13 17 17 O 1.21596 * 120.00250 * 226.15908 * 16 15 14 18 18 N 1.34780 * 119.99754 * 46.16732 * 16 15 14 19 19 C 1.47014 * 125.64914 * 356.04877 * 18 16 15 20 20 C 1.54330 * 107.27189 * 178.96558 * 19 18 16 21 21 C 1.55161 * 102.93914 * 337.80741 * 20 19 18 22 22 H 1.09004 * 111.00193 * 277.42522 * 21 20 19 23 23 C 1.50698 * 111.00088 * 153.57676 * 21 20 19 24 24 N 1.34769 * 120.00153 * 179.97438 * 23 21 20 25 25 O 1.21287 * 120.00292 * 0.02562 * 23 21 20 26 26 C 1.47427 * 125.64573 * 176.08189 * 18 16 15 27 27 H 0.96997 * 120.00054 * 359.97438 * 1 2 3 28 28 H 1.07994 * 119.96076 * 359.97438 * 11 10 9 29 29 H 1.08002 * 119.80196 * 179.74312 * 12 11 10 30 30 H 1.07997 * 119.84262 * 179.97438 * 13 12 11 31 31 H 1.07997 * 120.04394 * 179.97438 * 14 13 12 32 32 H 1.09004 * 109.88177 * 59.54924 * 19 18 16 33 33 H 1.09003 * 110.01324 * 298.45507 * 19 18 16 34 34 H 1.09000 * 110.71786 * 219.44353 * 20 19 18 35 35 H 1.08994 * 110.87314 * 96.24540 * 20 19 18 36 36 H 0.97005 * 120.00203 * 0.02562 * 24 23 21 37 37 H 0.96997 * 120.00541 * 179.97438 * 24 23 21 38 38 H 1.08989 * 110.37225 * 85.26386 * 26 18 16 39 39 H 1.09004 * 110.36495 * 322.93886 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0088 -1.2011 0.0005 8 1 3.0887 -1.2010 0.0010 9 8 1.3347 -2.3686 0.0005 10 6 2.0682 -3.5025 0.1138 11 6 3.4341 -3.4289 0.3517 12 6 4.1802 -4.5849 0.4616 13 6 3.5739 -5.8250 0.3406 14 6 2.2182 -5.9174 0.1097 15 6 1.4501 -4.7563 -0.0028 16 6 -0.0016 -4.8480 -0.2494 17 8 -0.5198 -4.1467 -1.0968 18 7 -0.7534 -5.7090 0.4648 19 6 -0.2477 -6.6688 1.4570 20 6 -1.4678 -7.4180 2.0329 21 6 -2.6413 -6.4448 1.7441 22 1 -2.7041 -5.6707 2.5090 23 6 -3.9451 -7.1911 1.6255 24 7 -5.0861 -6.5187 1.3756 25 8 -3.9679 -8.3967 1.7560 26 6 -2.2189 -5.8447 0.3799 27 1 -0.4850 0.8400 0.0004 28 1 3.9139 -2.4661 0.4464 29 1 5.2431 -4.5225 0.6425 30 1 4.1665 -6.7237 0.4278 31 1 1.7505 -6.8862 0.0158 32 1 0.2719 -6.1381 2.2548 33 1 0.4303 -7.3763 0.9797 34 1 -1.3525 -7.5757 3.1053 35 1 -1.6187 -8.3673 1.5191 36 1 -5.0680 -5.5544 1.2716 37 1 -5.9253 -6.9990 1.2989 38 1 -2.4911 -6.5191 -0.4318 39 1 -2.6825 -4.8688 0.2350 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919815404.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:26 Heat of formation + Delta-G solvation = -95.212629 kcal Electronic energy + Delta-G solvation = -24695.499019 eV Core-core repulsion = 20988.729183 eV Total energy + Delta-G solvation = -3706.769836 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.66327 -40.84851 -39.84530 -38.05469 -37.95454 -34.73049 -34.33967 -33.18690 -31.66808 -30.61096 -30.08768 -27.42812 -26.07656 -23.99655 -23.28370 -23.06697 -21.01590 -20.78557 -19.91446 -18.96490 -18.50175 -18.02268 -17.76026 -16.97003 -16.70580 -16.44336 -16.18484 -15.84139 -15.54552 -15.48429 -15.06621 -14.82462 -14.53875 -14.46406 -14.25259 -13.89642 -13.57854 -13.56226 -13.04040 -12.78140 -12.60359 -12.51414 -12.35039 -12.26097 -12.09693 -11.80637 -11.48456 -11.16211 -10.86100 -10.76084 -10.69611 -9.87875 -9.65483 -9.05259 -8.48172 -6.17463 0.21074 0.70800 1.33543 1.43230 1.44111 1.52788 1.77700 2.02322 2.15502 2.57366 2.82126 3.15832 3.26352 3.40490 3.51064 3.83882 3.87623 4.05095 4.19720 4.22914 4.27877 4.30445 4.52656 4.54333 4.63702 4.73809 4.78185 4.93144 4.99358 5.08265 5.14149 5.15991 5.35829 5.51445 5.60653 5.70134 5.85718 5.95836 6.16081 6.35038 6.44616 6.93883 7.22069 7.25321 7.75524 8.74229 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.014989 B = 0.004325 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.630492 B = 6472.035263 C = 7980.307856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.021 4.021 3 Si 1.021 2.979 4 H -0.247 1.247 5 H -0.272 1.272 6 H -0.266 1.266 7 C -0.420 4.420 8 H 0.106 0.894 9 O -0.209 6.209 10 C 0.148 3.852 11 C -0.250 4.250 12 C -0.044 4.044 13 C -0.192 4.192 14 C -0.038 4.038 15 C -0.230 4.230 16 C 0.580 3.420 17 O -0.579 6.579 18 N -0.619 5.619 19 C 0.095 3.905 20 C -0.101 4.101 21 C -0.120 4.120 22 H 0.126 0.874 23 C 0.537 3.463 24 N -0.836 5.836 25 O -0.576 6.576 26 C 0.119 3.881 27 H 0.272 0.728 28 H 0.124 0.876 29 H 0.155 0.845 30 H 0.164 0.836 31 H 0.154 0.846 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.416 0.584 37 H 0.411 0.589 38 H 0.071 0.929 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.552 -13.594 6.471 15.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.220 4.220 3 Si 0.840 3.160 4 H -0.170 1.170 5 H -0.197 1.197 6 H -0.191 1.191 7 C -0.495 4.495 8 H 0.124 0.876 9 O -0.113 6.113 10 C 0.095 3.905 11 C -0.269 4.269 12 C -0.062 4.062 13 C -0.210 4.210 14 C -0.056 4.056 15 C -0.235 4.235 16 C 0.372 3.628 17 O -0.458 6.458 18 N -0.354 5.354 19 C -0.026 4.026 20 C -0.139 4.139 21 C -0.142 4.142 22 H 0.144 0.856 23 C 0.321 3.679 24 N -0.400 5.400 25 O -0.456 6.456 26 C -0.004 4.004 27 H 0.081 0.919 28 H 0.142 0.858 29 H 0.172 0.828 30 H 0.182 0.818 31 H 0.171 0.829 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.128 0.872 35 H 0.108 0.892 36 H 0.246 0.754 37 H 0.243 0.757 38 H 0.089 0.911 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.043 -13.728 6.065 15.044 hybrid contribution -0.463 1.561 -0.361 1.668 sum -1.506 -12.167 5.704 13.522 Atomic orbital electron populations 1.70245 1.08298 1.28691 1.47729 1.26690 0.96779 1.02964 0.95534 0.84502 0.78434 0.74531 0.78517 1.16964 1.19686 1.19056 1.21979 0.92641 0.81421 1.53495 0.87645 1.84016 1.35750 1.12534 1.79036 1.19912 0.91698 0.86935 0.91992 1.21292 0.92817 1.00906 1.11910 1.21415 1.00458 0.91203 0.93154 1.21164 0.94117 0.98379 1.07376 1.21307 0.94461 0.95608 0.94249 1.19046 0.92709 0.92680 1.19051 1.18170 0.87042 0.77726 0.79905 1.90778 1.74867 1.44636 1.35534 1.48320 1.07421 1.38083 1.41545 1.22453 0.97906 0.91071 0.91193 1.22552 0.90091 0.97573 1.03721 1.22510 0.93266 0.99912 0.98515 0.85634 1.20164 0.86061 0.86983 0.74658 1.43785 1.09691 1.13037 1.73459 1.90728 1.87365 1.15627 1.51872 1.22053 0.80830 1.00948 0.96587 0.91896 0.85783 0.82767 0.81845 0.82874 0.90842 0.88858 0.87224 0.89180 0.75383 0.75724 0.91077 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.89 13.67 21.62 0.30 -57.59 16 2 C -0.02 -1.23 5.49 84.85 0.47 -0.76 16 3 Si 1.02 43.30 29.55 68.60 2.03 45.33 16 4 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 6 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.42 -24.90 9.44 67.93 0.64 -24.26 16 8 H 0.11 5.64 5.31 -2.91 -0.02 5.63 16 9 O -0.21 -13.05 8.71 -8.58 -0.07 -13.12 16 10 C 0.15 7.52 6.63 22.91 0.15 7.67 16 11 C -0.25 -10.48 9.12 22.36 0.20 -10.27 16 12 C -0.04 -1.35 10.03 22.30 0.22 -1.13 16 13 C -0.19 -5.11 10.02 22.25 0.22 -4.88 16 14 C -0.04 -1.18 8.51 22.52 0.19 -0.99 16 15 C -0.23 -10.02 5.45 -19.99 -0.11 -10.12 16 16 C 0.58 26.68 7.17 86.69 0.62 27.30 16 17 O -0.58 -33.23 16.69 7.50 0.13 -33.11 16 18 N -0.62 -20.95 3.33 -815.53 -2.71 -23.67 16 19 C 0.10 2.24 5.63 86.73 0.49 2.73 16 20 C -0.10 -1.94 6.08 31.79 0.19 -1.75 16 21 C -0.12 -2.50 3.43 -10.15 -0.03 -2.53 16 22 H 0.13 2.33 8.14 -2.38 -0.02 2.31 16 23 C 0.54 11.20 7.42 87.66 0.65 11.85 16 24 N -0.84 -11.80 8.87 -173.54 -1.54 -13.34 16 25 O -0.58 -15.92 16.55 -3.05 -0.05 -15.97 16 26 C 0.12 3.37 6.35 86.85 0.55 3.92 16 27 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 28 H 0.12 5.27 5.72 -2.91 -0.02 5.26 16 29 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 30 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 31 H 0.15 3.62 5.84 -2.91 -0.02 3.60 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.09 1.81 5.91 -2.39 -0.01 1.80 16 34 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.09 1.79 7.38 -2.39 -0.02 1.78 16 36 H 0.42 4.45 8.83 -92.70 -0.82 3.64 16 37 H 0.41 4.63 8.93 -92.71 -0.83 3.80 16 38 H 0.07 1.95 8.03 -2.39 -0.02 1.93 16 39 H 0.07 2.17 8.08 -2.39 -0.02 2.15 16 Total: -1.00 -89.58 332.34 2.01 -87.57 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: -0.52 Total: 27.14 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 4.46 Total: -3.23 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -3.96 Total: -94.60 kcal Atomic # 8 Polarization: -62.20 SS G_CDS: 0.00 Total: -62.20 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -89.58 2.01 -87.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919815404.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.645 kcal (2) G-P(sol) polarization free energy of solvation -89.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds