Wall clock time and date at job start Fri Apr 10 2020 17:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86796 * 120.00397 * 2 1 4 4 H 1.48495 * 109.47293 * 270.00763 * 3 2 1 5 5 H 1.48508 * 109.46826 * 30.00001 * 3 2 1 6 6 H 1.48492 * 109.47175 * 149.99955 * 3 2 1 7 7 C 1.38701 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99672 * 180.02562 * 7 2 1 9 9 O 1.34813 * 119.99955 * 359.97438 * 7 2 1 10 10 C 1.35521 * 117.00074 * 174.95867 * 9 7 2 11 11 C 1.38835 * 120.16084 * 5.42636 * 10 9 7 12 12 C 1.38024 * 120.07514 * 180.02562 * 11 10 9 13 13 C 1.38572 * 120.40092 * 359.95279 * 12 11 10 14 14 C 1.37836 * 120.32191 * 359.79169 * 13 12 11 15 15 C 1.39661 * 119.91698 * 0.48460 * 14 13 12 16 16 C 1.47534 * 120.19634 * 179.76780 * 15 14 13 17 17 O 1.21596 * 120.00373 * 187.17090 * 16 15 14 18 18 N 1.34778 * 120.00136 * 7.17037 * 16 15 14 19 19 C 1.47419 * 125.65313 * 174.34366 * 18 16 15 20 20 C 1.54905 * 104.83515 * 155.90844 * 19 18 16 21 21 C 1.55155 * 101.61688 * 36.99194 * 20 19 18 22 22 H 1.08994 * 110.71977 * 82.88125 * 21 20 19 23 23 C 1.50703 * 110.72269 * 206.15442 * 21 20 19 24 24 N 1.34774 * 120.00150 * 179.97438 * 23 21 20 25 25 O 1.21287 * 119.99486 * 0.02562 * 23 21 20 26 26 C 1.47023 * 125.64350 * 354.38581 * 18 16 15 27 27 H 0.97007 * 119.99480 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.96243 * 359.97438 * 11 10 9 29 29 H 1.08001 * 119.79869 * 179.97438 * 12 11 10 30 30 H 1.07999 * 119.84040 * 180.02562 * 13 12 11 31 31 H 1.07997 * 120.04230 * 180.25441 * 14 13 12 32 32 H 1.09004 * 110.36434 * 37.06972 * 19 18 16 33 33 H 1.09003 * 110.46386 * 274.79521 * 19 18 16 34 34 H 1.09003 * 111.00789 * 155.08481 * 20 19 18 35 35 H 1.09005 * 111.00366 * 278.89749 * 20 19 18 36 36 H 0.97002 * 119.99684 * 0.02562 * 24 23 21 37 37 H 0.96998 * 119.99694 * 180.02562 * 24 23 21 38 38 H 1.08994 * 109.88269 * 300.43607 * 26 18 16 39 39 H 1.08997 * 109.88296 * 61.45658 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0087 -1.2012 -0.0005 8 1 3.0886 -1.2012 -0.0001 9 8 1.3346 -2.3687 -0.0005 10 6 2.0685 -3.5030 -0.1072 11 6 3.4554 -3.4400 -0.0969 12 6 4.2011 -4.5963 -0.2062 13 6 3.5743 -5.8263 -0.3257 14 6 2.1984 -5.9084 -0.3324 15 6 1.4307 -4.7464 -0.2285 16 6 -0.0424 -4.8267 -0.2403 17 8 -0.7065 -3.8089 -0.2812 18 7 -0.6521 -6.0281 -0.2056 19 6 -2.1050 -6.2515 -0.0941 20 6 -2.3383 -7.6561 -0.7043 21 6 -1.0749 -8.4186 -0.2252 22 1 -1.2094 -8.7872 0.7917 23 6 -0.7466 -9.5501 -1.1649 24 7 0.3205 -10.3376 -0.9247 25 8 -1.4422 -9.7515 -2.1379 26 6 0.0218 -7.3331 -0.2717 27 1 -0.4850 0.8402 0.0004 28 1 3.9513 -2.4850 -0.0042 29 1 5.2797 -4.5420 -0.1981 30 1 4.1666 -6.7254 -0.4102 31 1 1.7146 -6.8698 -0.4217 32 1 -2.6495 -5.4963 -0.6611 33 1 -2.4139 -6.2359 0.9511 34 1 -3.2444 -8.1106 -0.3036 35 1 -2.3764 -7.6078 -1.7926 36 1 0.8769 -10.1762 -0.1467 37 1 0.5319 -11.0656 -1.5298 38 1 0.5829 -7.4138 -1.2026 39 1 0.6951 -7.4461 0.5779 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919815405.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:29 Heat of formation + Delta-G solvation = -73.180131 kcal Electronic energy + Delta-G solvation = -24834.894831 eV Core-core repulsion = 21129.080395 eV Total energy + Delta-G solvation = -3705.814435 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.77016 -40.77784 -39.79076 -38.08807 -37.87653 -34.64344 -34.34139 -33.32508 -31.76084 -30.65296 -29.95402 -27.38367 -26.14911 -24.16108 -23.44361 -22.73725 -21.06753 -20.87623 -19.85160 -18.75750 -18.42240 -17.94731 -17.71976 -17.18390 -16.53175 -16.36335 -16.04138 -15.91273 -15.59285 -15.42607 -14.98122 -14.89224 -14.39226 -14.34823 -14.25048 -13.86519 -13.55156 -13.47333 -13.00970 -12.80120 -12.65013 -12.53487 -12.46893 -12.14677 -11.93802 -11.68441 -11.34834 -11.06739 -10.84077 -10.62155 -10.58842 -9.86337 -9.66904 -9.01412 -8.45390 -6.16688 0.12224 0.72847 1.31471 1.43460 1.50832 1.56994 1.97460 2.04655 2.15357 2.61487 2.86296 3.19704 3.26753 3.44350 3.46510 3.92746 3.95571 4.08347 4.19387 4.24949 4.28776 4.31994 4.45488 4.56601 4.60343 4.77797 4.80705 4.88927 4.96453 5.07112 5.12910 5.17865 5.38535 5.51135 5.62169 5.70418 5.95254 5.96699 6.19082 6.50068 6.51261 6.93745 7.35534 7.39419 7.79864 8.75374 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.021771 B = 0.003956 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.833174 B = 7076.448760 C = 8195.185156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.023 4.023 3 Si 1.023 2.977 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.246 1.246 7 C -0.428 4.428 8 H 0.107 0.893 9 O -0.192 6.192 10 C 0.147 3.853 11 C -0.259 4.259 12 C -0.041 4.041 13 C -0.198 4.198 14 C -0.068 4.068 15 C -0.242 4.242 16 C 0.560 3.440 17 O -0.571 6.571 18 N -0.623 5.623 19 C 0.100 3.900 20 C -0.104 4.104 21 C -0.115 4.115 22 H 0.155 0.845 23 C 0.531 3.469 24 N -0.831 5.831 25 O -0.587 6.587 26 C 0.099 3.901 27 H 0.271 0.729 28 H 0.122 0.878 29 H 0.154 0.846 30 H 0.170 0.830 31 H 0.189 0.811 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.066 0.934 36 H 0.421 0.579 37 H 0.410 0.590 38 H 0.082 0.918 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.475 -22.456 2.656 23.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.222 4.222 3 Si 0.841 3.159 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.169 1.169 7 C -0.504 4.504 8 H 0.125 0.875 9 O -0.094 6.094 10 C 0.092 3.908 11 C -0.278 4.278 12 C -0.059 4.059 13 C -0.217 4.217 14 C -0.085 4.085 15 C -0.247 4.247 16 C 0.353 3.647 17 O -0.450 6.450 18 N -0.358 5.358 19 C -0.023 4.023 20 C -0.142 4.142 21 C -0.137 4.137 22 H 0.172 0.828 23 C 0.315 3.685 24 N -0.394 5.394 25 O -0.467 6.467 26 C -0.023 4.023 27 H 0.080 0.920 28 H 0.140 0.860 29 H 0.172 0.828 30 H 0.187 0.813 31 H 0.205 0.795 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.132 0.868 35 H 0.085 0.915 36 H 0.253 0.747 37 H 0.241 0.759 38 H 0.100 0.900 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.190 -21.621 2.115 22.336 hybrid contribution 0.184 1.313 -0.035 1.326 sum 5.375 -20.308 2.080 21.110 Atomic orbital electron populations 1.70335 1.08425 1.28576 1.46903 1.26785 0.96737 1.03174 0.95499 0.84550 0.77943 0.74101 0.79280 1.18827 1.19662 1.16910 1.22048 0.92706 0.81807 1.53846 0.87536 1.84170 1.35292 1.12237 1.77742 1.20109 0.91767 0.87484 0.91452 1.21291 0.92179 1.01050 1.13258 1.21484 1.00713 0.91409 0.92308 1.21270 0.93904 0.98448 1.08039 1.22667 0.94907 0.97562 0.93346 1.19218 0.91894 0.93082 1.20506 1.18349 0.88272 0.81953 0.76119 1.90930 1.67310 1.35744 1.51011 1.48261 1.08281 1.04964 1.74324 1.22359 0.80713 0.97668 1.01516 1.22623 0.98399 0.91919 1.01274 1.22511 0.95942 0.92834 1.02378 0.82771 1.20329 0.80453 0.82904 0.84816 1.43705 1.29344 1.34418 1.31982 1.90765 1.51901 1.72745 1.31284 1.22663 0.95211 0.80816 1.03615 0.92042 0.86027 0.82832 0.81290 0.79512 0.93189 0.89960 0.86832 0.91485 0.74697 0.75857 0.90039 0.86425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -60.19 13.67 21.62 0.30 -59.89 16 2 C -0.02 -1.38 5.49 84.85 0.47 -0.91 16 3 Si 1.02 44.70 29.55 68.60 2.03 46.73 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 6 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 7 C -0.43 -26.26 9.49 67.93 0.64 -25.62 16 8 H 0.11 5.84 5.20 -2.91 -0.02 5.82 16 9 O -0.19 -12.42 7.87 0.72 0.01 -12.41 16 10 C 0.15 7.67 6.65 22.91 0.15 7.83 16 11 C -0.26 -11.05 9.16 22.36 0.20 -10.85 16 12 C -0.04 -1.24 10.03 22.30 0.22 -1.02 16 13 C -0.20 -4.97 10.03 22.25 0.22 -4.75 16 14 C -0.07 -1.98 8.60 22.52 0.19 -1.79 16 15 C -0.24 -10.68 5.89 -19.99 -0.12 -10.79 16 16 C 0.56 26.45 7.80 86.69 0.68 27.12 16 17 O -0.57 -35.04 15.43 16.75 0.26 -34.78 16 18 N -0.62 -20.52 3.33 -828.74 -2.76 -23.28 16 19 C 0.10 2.86 6.94 86.85 0.60 3.46 16 20 C -0.10 -2.13 6.18 31.98 0.20 -1.93 16 21 C -0.12 -1.64 3.34 -10.33 -0.03 -1.67 16 22 H 0.15 1.03 8.14 -2.39 -0.02 1.01 16 23 C 0.53 8.33 7.27 87.66 0.64 8.97 16 24 N -0.83 -5.18 8.87 -173.53 -1.54 -6.72 16 25 O -0.59 -15.40 16.54 -3.05 -0.05 -15.45 16 26 C 0.10 1.88 4.46 86.75 0.39 2.27 16 27 H 0.27 16.43 8.31 -92.70 -0.77 15.66 16 28 H 0.12 5.29 5.64 -2.91 -0.02 5.28 16 29 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 30 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.19 3.64 2.74 -8.02 -0.02 3.62 16 32 H 0.05 1.75 7.99 -2.38 -0.02 1.74 16 33 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 1.73 7.40 -2.38 -0.02 1.71 16 36 H 0.42 -0.28 8.83 -92.71 -0.82 -1.10 16 37 H 0.41 2.07 8.93 -92.71 -0.83 1.24 16 38 H 0.08 1.53 6.40 -2.39 -0.02 1.52 16 39 H 0.12 1.53 6.74 -2.39 -0.02 1.51 16 Total: -1.00 -100.09 326.62 2.17 -97.92 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -0.52 Total: 17.58 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: 4.46 Total: -9.68 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -4.00 Total: -89.89 kcal Atomic # 8 Polarization: -62.86 SS G_CDS: 0.21 Total: -62.65 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -100.09 2.17 -97.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919815405.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.736 kcal (2) G-P(sol) polarization free energy of solvation -100.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds