Wall clock time and date at job start Fri Apr 10 2020 17:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38102 * 119.92551 * 179.72299 * 11 10 9 13 13 C 1.38304 * 120.07256 * 0.53125 * 12 11 10 14 14 C 1.50699 * 119.93206 * 179.74744 * 13 12 11 15 15 N 1.46505 * 109.46837 * 270.01794 * 14 13 12 16 16 C 1.34769 * 119.99695 * 180.02562 * 15 14 13 17 17 O 1.21584 * 120.00538 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99947 * 180.02562 * 16 15 14 19 19 C 1.46507 * 120.00323 * 180.02562 * 18 16 15 20 20 C 1.47193 * 109.47292 * 180.02562 * 19 18 16 21 21 C 9.69311 * 125.68119 * 228.24013 * 11 1 2 22 22 C 9.82511 * 122.87904 * 242.65327 * 12 1 2 23 23 O 1.42898 * 109.46990 * 85.45018 * 22 21 20 24 24 C 1.38305 * 120.13385 * 359.76794 * 13 12 11 25 25 C 1.38101 * 120.07071 * 359.95556 * 24 13 12 26 26 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 28 28 H 1.07997 * 119.96688 * 180.27743 * 12 11 10 29 29 H 1.08986 * 109.47504 * 30.02088 * 14 13 12 30 30 H 1.09005 * 109.46821 * 150.02396 * 14 13 12 31 31 H 0.96998 * 119.99976 * 0.02562 * 15 14 13 32 32 H 0.96998 * 119.99724 * 359.97438 * 18 16 15 33 33 H 1.09004 * 109.46776 * 299.99985 * 19 18 16 34 34 H 1.08996 * 109.46808 * 59.99668 * 19 18 16 35 35 H 1.08999 * 109.46783 * 205.44933 * 22 21 20 36 36 H 1.08992 * 109.46901 * 325.44923 * 22 21 20 37 37 H 0.96693 * 113.99986 * 179.97438 * 23 22 21 38 38 H 1.07999 * 119.96326 * 179.97438 * 24 13 12 39 39 H 1.07997 * 120.03156 * 180.02562 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9789 -3.6994 0.3397 13 6 5.2292 -4.8615 0.3269 14 6 5.9132 -6.1990 0.4463 15 7 6.2546 -6.6939 -0.8897 16 6 6.8769 -7.8811 -1.0298 17 8 7.1546 -8.5416 -0.0476 18 7 7.1914 -8.3362 -2.2588 19 6 7.8674 -9.6271 -2.4113 20 6 8.0985 -9.8942 -3.8402 21 6 8.2795 -10.1110 -4.9766 22 6 8.5089 -10.3788 -6.4070 23 8 7.6536 -9.5446 -7.1908 24 6 3.8531 -4.7987 0.2042 25 6 3.2232 -3.5745 0.0950 26 1 -0.4849 0.8401 0.0004 27 1 5.9419 -1.5655 0.2316 28 1 7.0534 -3.7517 0.4353 29 1 6.8228 -6.0905 1.0369 30 1 5.2443 -6.9068 0.9360 31 1 6.0326 -6.1672 -1.6734 32 1 6.9694 -7.8095 -3.0425 33 1 8.8231 -9.6007 -1.8877 34 1 7.2439 -10.4156 -1.9900 35 1 9.5491 -10.1668 -6.6540 36 1 8.2908 -11.4252 -6.6202 37 1 7.7513 -9.6673 -8.1450 38 1 3.2703 -5.7080 0.1940 39 1 2.1486 -3.5262 -0.0003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923783436.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:32 Heat of formation + Delta-G solvation = -26.086752 kcal Electronic energy + Delta-G solvation = -22342.694512 eV Core-core repulsion = 18638.922199 eV Total energy + Delta-G solvation = -3703.772313 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.07601 -39.24269 -37.59441 -37.12270 -35.71205 -34.40055 -33.15228 -32.46308 -30.41887 -30.20291 -28.53125 -26.27456 -25.46255 -24.22563 -22.17721 -21.01808 -20.60245 -18.95992 -18.11529 -17.98203 -17.54149 -17.17465 -16.37124 -15.93321 -15.53198 -14.98649 -14.96114 -14.79439 -14.30245 -14.16624 -13.93240 -13.83367 -13.70540 -13.34904 -12.85380 -12.75937 -12.70222 -12.26548 -12.00021 -11.47638 -11.35932 -10.99926 -10.94665 -10.85889 -10.75494 -10.27174 -10.21633 -10.17231 -9.48183 -9.37552 -8.95157 -8.82957 -8.37121 -7.48086 -6.49528 -4.16489 1.66691 2.00845 2.03555 2.18585 2.99806 3.16784 3.18331 3.20689 3.34957 3.46514 4.17000 4.18861 4.29958 4.50142 4.68759 4.74388 4.82343 5.03185 5.05615 5.15915 5.23905 5.27375 5.38037 5.57462 5.75160 5.87397 6.03813 6.18027 6.25977 6.45875 6.53052 6.68558 6.80149 6.95246 6.98010 7.07617 7.13597 7.19907 7.50564 7.71143 7.94310 7.95899 8.53301 8.84969 9.45680 10.57618 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.017627 B = 0.002191 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.059844 B =12777.533740 C =13719.814820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.391 4.391 8 H 0.108 0.892 9 O -0.213 6.213 10 C 0.167 3.833 11 C -0.196 4.196 12 C -0.055 4.055 13 C -0.206 4.206 14 C 0.196 3.804 15 N -0.736 5.736 16 C 0.705 3.295 17 O -0.595 6.595 18 N -0.749 5.749 19 C 0.254 3.746 20 C -0.167 4.167 21 C -0.165 4.165 22 C 0.191 3.809 23 O -0.566 6.566 24 C -0.051 4.051 25 C -0.225 4.225 26 H 0.281 0.719 27 H 0.118 0.882 28 H 0.115 0.885 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.399 0.601 32 H 0.401 0.599 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.390 0.610 38 H 0.111 0.889 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.043 -17.445 -10.322 25.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.125 0.875 9 O -0.117 6.117 10 C 0.114 3.886 11 C -0.215 4.215 12 C -0.074 4.074 13 C -0.207 4.207 14 C 0.074 3.926 15 N -0.391 5.391 16 C 0.405 3.595 17 O -0.474 6.474 18 N -0.406 5.406 19 C 0.130 3.870 20 C -0.167 4.167 21 C -0.167 4.167 22 C 0.114 3.886 23 O -0.373 6.373 24 C -0.070 4.070 25 C -0.244 4.244 26 H 0.091 0.909 27 H 0.136 0.864 28 H 0.133 0.867 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.233 0.767 32 H 0.235 0.765 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.238 0.762 38 H 0.130 0.870 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 15.971 -17.473 -8.789 25.251 hybrid contribution 0.038 0.950 -1.368 1.666 sum 16.009 -16.522 -10.157 25.148 Atomic orbital electron populations 1.69645 1.05596 1.28657 1.47342 1.24497 0.95059 0.98940 0.95502 0.86165 0.80334 0.81317 0.79012 1.19820 1.20719 1.18307 1.20791 0.76766 0.96725 1.52380 0.87487 1.83571 1.22766 1.25854 1.79536 1.19188 0.91745 0.85505 0.92195 1.20212 0.91950 0.97930 1.11389 1.20547 0.98439 0.91218 0.97207 1.19294 0.93750 0.93473 1.14232 1.19865 0.98733 0.91954 0.82091 1.45471 1.63061 1.20081 1.10476 1.15903 0.78782 0.81776 0.83056 1.90922 1.60460 1.58635 1.37353 1.45059 1.65400 1.22525 1.07608 1.17852 0.98450 0.85604 0.85059 1.22136 0.99682 1.00784 0.94130 1.21781 1.01933 0.99733 0.93218 1.18749 0.93859 0.94056 0.81953 1.86549 1.64172 1.64593 1.22004 1.20716 0.93396 0.96862 0.96034 1.21283 1.01258 0.91769 1.10060 0.90914 0.86373 0.86732 0.91518 0.91499 0.76741 0.76526 0.88995 0.88979 0.90879 0.90852 0.76208 0.87046 0.84790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.77 13.96 55.48 0.77 -24.00 16 2 C 0.06 1.76 5.49 -17.51 -0.10 1.66 16 3 Si 0.91 21.18 28.62 -169.99 -4.86 16.31 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.39 -10.72 9.95 30.89 0.31 -10.42 16 8 H 0.11 2.99 5.44 -52.48 -0.29 2.71 16 9 O -0.21 -5.44 8.59 0.05 0.00 -5.44 16 10 C 0.17 3.67 6.65 -39.11 -0.26 3.41 16 11 C -0.20 -3.65 9.99 -39.39 -0.39 -4.04 16 12 C -0.06 -0.87 9.69 -39.61 -0.38 -1.26 16 13 C -0.21 -3.16 5.25 -104.57 -0.55 -3.71 16 14 C 0.20 2.67 5.80 -5.19 -0.03 2.64 16 15 N -0.74 -9.07 5.55 -66.42 -0.37 -9.43 16 16 C 0.70 9.35 8.57 -86.92 -0.74 8.61 16 17 O -0.60 -9.98 16.34 5.29 0.09 -9.89 16 18 N -0.75 -7.74 5.54 -68.12 -0.38 -8.12 16 19 C 0.25 2.36 6.15 -6.83 -0.04 2.32 16 20 C -0.17 -1.56 13.44 -37.16 -0.50 -2.06 16 21 C -0.17 -1.48 13.72 -37.10 -0.51 -1.99 16 22 C 0.19 1.04 7.52 34.42 0.26 1.30 16 23 O -0.57 -3.79 13.62 -35.23 -0.48 -4.27 16 24 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 25 C -0.22 -4.59 9.17 -39.40 -0.36 -4.95 16 26 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.12 2.07 8.06 -52.49 -0.42 1.64 16 28 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.07 0.91 8.08 -51.94 -0.42 0.49 16 30 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 31 H 0.40 4.32 8.48 -40.82 -0.35 3.98 16 32 H 0.40 3.53 8.46 -40.82 -0.35 3.18 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.39 0.46 9.12 45.56 0.42 0.88 16 38 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 39 H 0.13 2.91 5.64 -52.49 -0.30 2.61 16 LS Contribution 352.98 15.07 5.32 5.32 Total: -1.00 -33.56 352.98 -7.39 -40.95 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -3.79 Total: 8.31 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -3.69 Total: -9.74 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.03 Total: -41.55 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.39 Total: -19.60 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.86 Total: 16.31 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.56 -7.39 -40.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923783436.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.863 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds