Wall clock time and date at job start Fri Apr 10 2020 17:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38102 * 119.92551 * 179.72299 * 11 10 9 13 13 C 1.38304 * 120.07256 * 0.53125 * 12 11 10 14 14 C 1.50699 * 119.93206 * 179.74744 * 13 12 11 15 15 N 1.46505 * 109.46837 * 270.01794 * 14 13 12 16 16 C 1.34769 * 119.99695 * 180.02562 * 15 14 13 17 17 O 1.21584 * 120.00538 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99947 * 180.02562 * 16 15 14 19 19 C 1.46507 * 120.00323 * 180.02562 * 18 16 15 20 20 C 1.47193 * 109.47292 * 180.02562 * 19 18 16 21 21 C 9.69311 * 125.68119 * 228.24013 * 11 1 2 22 22 C 9.82511 * 122.87904 * 242.65327 * 12 1 2 23 23 O 1.42898 * 109.46990 * 85.45018 * 22 21 20 24 24 C 1.38305 * 120.13385 * 359.76794 * 13 12 11 25 25 C 1.38101 * 120.07071 * 359.95556 * 24 13 12 26 26 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 28 28 H 1.07997 * 119.96688 * 180.27743 * 12 11 10 29 29 H 1.08986 * 109.47504 * 30.02088 * 14 13 12 30 30 H 1.09005 * 109.46821 * 150.02396 * 14 13 12 31 31 H 0.96998 * 119.99976 * 0.02562 * 15 14 13 32 32 H 0.96998 * 119.99724 * 359.97438 * 18 16 15 33 33 H 1.09004 * 109.46776 * 299.99985 * 19 18 16 34 34 H 1.08996 * 109.46808 * 59.99668 * 19 18 16 35 35 H 1.08999 * 109.46783 * 205.44933 * 22 21 20 36 36 H 1.08992 * 109.46901 * 325.44923 * 22 21 20 37 37 H 0.96693 * 113.99986 * 179.97438 * 23 22 21 38 38 H 1.07999 * 119.96326 * 179.97438 * 24 13 12 39 39 H 1.07997 * 120.03156 * 180.02562 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9789 -3.6994 0.3397 13 6 5.2292 -4.8615 0.3269 14 6 5.9132 -6.1990 0.4463 15 7 6.2546 -6.6939 -0.8897 16 6 6.8769 -7.8811 -1.0298 17 8 7.1546 -8.5416 -0.0476 18 7 7.1914 -8.3362 -2.2588 19 6 7.8674 -9.6271 -2.4113 20 6 8.0985 -9.8942 -3.8402 21 6 8.2795 -10.1110 -4.9766 22 6 8.5089 -10.3788 -6.4070 23 8 7.6536 -9.5446 -7.1908 24 6 3.8531 -4.7987 0.2042 25 6 3.2232 -3.5745 0.0950 26 1 -0.4849 0.8401 0.0004 27 1 5.9419 -1.5655 0.2316 28 1 7.0534 -3.7517 0.4353 29 1 6.8228 -6.0905 1.0369 30 1 5.2443 -6.9068 0.9360 31 1 6.0326 -6.1672 -1.6734 32 1 6.9694 -7.8095 -3.0425 33 1 8.8231 -9.6007 -1.8877 34 1 7.2439 -10.4156 -1.9900 35 1 9.5491 -10.1668 -6.6540 36 1 8.2908 -11.4252 -6.6202 37 1 7.7513 -9.6673 -8.1450 38 1 3.2703 -5.7080 0.1940 39 1 2.1486 -3.5262 -0.0003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923783436.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:32 Heat of formation + Delta-G solvation = -52.400063 kcal Electronic energy + Delta-G solvation = -22343.835543 eV Core-core repulsion = 18638.922199 eV Total energy + Delta-G solvation = -3704.913344 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.21663 -40.77279 -38.67940 -38.01445 -36.59174 -35.61235 -34.45341 -33.87543 -31.88532 -31.54169 -29.31070 -27.70895 -26.56034 -25.49283 -23.71398 -22.16702 -21.95104 -19.96073 -19.78540 -19.13605 -18.52743 -18.13956 -17.19675 -16.93107 -16.61791 -16.27732 -15.97653 -15.84839 -15.68763 -15.61007 -15.42419 -14.97292 -14.85237 -14.42266 -14.36818 -14.24063 -14.05153 -13.35481 -13.22378 -13.10147 -12.58507 -12.47001 -12.30813 -11.93884 -11.93465 -11.73736 -11.31395 -11.29524 -10.91491 -10.74662 -10.33418 -9.84769 -9.76874 -9.10667 -8.50963 -6.24038 0.45455 0.54920 1.04810 1.32386 1.36208 1.52010 1.53507 2.07394 2.12727 2.27411 2.75650 2.91854 3.00660 3.15045 3.44453 3.85545 3.89876 4.02262 4.14536 4.34389 4.42287 4.46069 4.48927 4.54815 4.59258 4.62574 4.74590 4.82776 4.96206 5.22578 5.31650 5.34086 5.46296 5.53857 5.71281 5.78856 5.88258 5.94043 6.19469 6.37793 6.83045 6.88495 7.01350 7.51814 7.56016 8.60266 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.017627 B = 0.002191 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.059844 B =12777.533740 C =13719.814820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.009 3.991 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.261 1.261 7 C -0.399 4.399 8 H 0.083 0.917 9 O -0.242 6.242 10 C 0.129 3.871 11 C -0.192 4.192 12 C -0.044 4.044 13 C -0.173 4.173 14 C 0.202 3.798 15 N -0.730 5.730 16 C 0.706 3.294 17 O -0.630 6.630 18 N -0.738 5.738 19 C 0.255 3.745 20 C -0.193 4.193 21 C -0.168 4.168 22 C 0.184 3.816 23 O -0.593 6.593 24 C -0.049 4.049 25 C -0.239 4.239 26 H 0.285 0.715 27 H 0.131 0.869 28 H 0.155 0.845 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.408 0.592 32 H 0.409 0.591 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.411 0.589 38 H 0.134 0.866 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.085 -18.703 -11.168 28.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.476 4.476 8 H 0.100 0.900 9 O -0.149 6.149 10 C 0.079 3.921 11 C -0.211 4.211 12 C -0.062 4.062 13 C -0.174 4.174 14 C 0.078 3.922 15 N -0.385 5.385 16 C 0.406 3.594 17 O -0.511 6.511 18 N -0.394 5.394 19 C 0.133 3.867 20 C -0.194 4.194 21 C -0.169 4.169 22 C 0.108 3.892 23 O -0.404 6.404 24 C -0.068 4.068 25 C -0.258 4.258 26 H 0.094 0.906 27 H 0.149 0.851 28 H 0.172 0.828 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.243 0.757 32 H 0.245 0.755 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.263 0.737 38 H 0.152 0.848 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 19.046 -18.769 -9.694 28.443 hybrid contribution -0.680 0.958 -1.153 1.646 sum 18.366 -17.811 -10.847 27.789 Atomic orbital electron populations 1.69731 1.06932 1.29643 1.49882 1.25306 0.95896 1.02246 0.95489 0.85204 0.78813 0.77349 0.79298 1.19023 1.19416 1.18557 1.20712 0.78044 0.96150 1.52658 0.89984 1.83519 1.21286 1.27542 1.82554 1.19750 0.93285 0.85045 0.93994 1.20521 0.90462 0.99849 1.10293 1.20962 1.00371 0.89841 0.95021 1.19545 0.92966 0.94622 1.10307 1.19776 0.98984 0.90514 0.82896 1.45228 1.62903 1.20053 1.10310 1.15937 0.78595 0.81588 0.83297 1.90906 1.61917 1.59603 1.38704 1.44969 1.64608 1.22834 1.07006 1.17854 0.98495 0.84972 0.85429 1.22204 1.00782 1.01947 0.94422 1.22734 1.01025 0.98740 0.94403 1.19073 0.94956 0.95151 0.80032 1.86475 1.64758 1.65193 1.24020 1.20932 0.94468 0.96213 0.95188 1.21270 1.00315 0.93069 1.11176 0.90552 0.85086 0.82773 0.90482 0.91444 0.75659 0.75509 0.88640 0.89010 0.88514 0.88492 0.73703 0.84847 0.87296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.45 13.96 21.61 0.30 -54.15 16 2 C 0.01 0.53 5.49 84.83 0.47 1.00 16 3 Si 0.97 44.67 28.62 68.60 1.96 46.63 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.40 -23.06 9.95 67.92 0.68 -22.39 16 8 H 0.08 4.96 5.44 -2.91 -0.02 4.95 16 9 O -0.24 -12.75 8.59 -22.72 -0.20 -12.94 16 10 C 0.13 5.74 6.65 22.58 0.15 5.89 16 11 C -0.19 -6.80 9.99 22.39 0.22 -6.58 16 12 C -0.04 -1.21 9.69 22.25 0.22 -0.99 16 13 C -0.17 -4.74 5.25 -19.83 -0.10 -4.84 16 14 C 0.20 4.74 5.80 85.63 0.50 5.23 16 15 N -0.73 -15.59 5.55 -482.31 -2.68 -18.26 16 16 C 0.71 16.98 8.57 179.06 1.53 18.51 16 17 O -0.63 -19.81 16.34 -3.98 -0.07 -19.88 16 18 N -0.74 -13.73 5.54 -487.69 -2.70 -16.43 16 19 C 0.26 4.40 6.15 84.57 0.52 4.92 16 20 C -0.19 -3.34 13.44 31.16 0.42 -2.92 16 21 C -0.17 -2.70 13.72 31.19 0.43 -2.27 16 22 C 0.18 1.55 7.52 70.21 0.53 2.08 16 23 O -0.59 -6.68 13.62 -148.98 -2.03 -8.71 16 24 C -0.05 -1.60 9.69 22.25 0.22 -1.38 16 25 C -0.24 -9.99 9.17 22.39 0.21 -9.78 16 26 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 27 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 28 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 29 H 0.08 1.75 8.08 -2.39 -0.02 1.73 16 30 H 0.07 1.66 8.08 -2.38 -0.02 1.64 16 31 H 0.41 7.43 8.48 -92.71 -0.79 6.64 16 32 H 0.41 6.28 8.46 -92.71 -0.78 5.49 16 33 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.41 0.08 9.12 -74.06 -0.68 -0.60 16 38 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 39 H 0.11 5.08 5.64 -2.91 -0.02 5.06 16 Total: -1.00 -75.41 352.98 -0.55 -75.95 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -1.11 Total: 21.31 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 5.97 Total: -13.52 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -5.08 Total: -88.84 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -2.29 Total: -41.53 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.96 Total: 46.63 kcal Total: -75.41 -0.55 -75.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923783436.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.553 kcal (2) G-P(sol) polarization free energy of solvation -75.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds