Wall clock time and date at job start Fri Apr 10 2020 17:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00099 * 2 1 4 4 H 1.48501 * 109.46999 * 270.57052 * 3 2 1 5 5 H 1.48499 * 109.47203 * 30.56740 * 3 2 1 6 6 H 1.48504 * 109.47292 * 150.56956 * 3 2 1 7 7 C 1.38809 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00594 * 343.44004 * 7 2 1 9 9 N 1.36944 * 119.99702 * 163.43836 * 7 2 1 10 10 C 1.46966 * 120.59379 * 326.46176 * 9 7 2 11 11 C 1.53368 * 108.63308 * 235.20630 * 10 9 7 12 12 N 1.46965 * 108.63704 * 310.57260 * 11 10 9 13 13 C 1.34776 * 120.59404 * 235.20659 * 12 11 10 14 14 O 1.21494 * 119.99623 * 175.76877 * 13 12 11 15 15 C 1.48336 * 119.99972 * 355.77304 * 13 12 11 16 16 C 1.39308 * 119.56942 * 168.42444 * 15 13 12 17 17 C 1.38447 * 119.18767 * 179.97438 * 16 15 13 18 18 C 1.39866 * 118.36031 * 359.73231 * 17 16 15 19 19 C 1.48009 * 120.46648 * 180.25998 * 18 17 16 20 20 N 1.34771 * 120.00165 * 180.28824 * 19 18 17 21 21 O 1.21528 * 119.99663 * 0.29146 * 19 18 17 22 22 C 1.39729 * 119.07261 * 0.54946 * 18 17 16 23 23 N 1.31415 * 120.71943 * 359.43382 * 22 18 17 24 24 C 1.46963 * 118.80931 * 55.47795 * 12 11 10 25 25 C 1.46965 * 120.59694 * 146.44054 * 9 7 2 26 26 H 0.97008 * 120.00189 * 0.02562 * 1 2 3 27 27 H 1.08991 * 109.61137 * 115.45680 * 10 9 7 28 28 H 1.09003 * 109.74713 * 355.02992 * 10 9 7 29 29 H 1.09001 * 109.60763 * 190.83020 * 11 10 9 30 30 H 1.09002 * 109.61013 * 70.32170 * 11 10 9 31 31 H 1.07996 * 120.40203 * 0.02562 * 16 15 13 32 32 H 1.08001 * 120.81994 * 180.02562 * 17 16 15 33 33 H 0.97005 * 120.00084 * 0.02562 * 20 19 18 34 34 H 0.97000 * 120.00202 * 180.02562 * 20 19 18 35 35 H 1.08002 * 119.64051 * 179.71193 * 22 18 17 36 36 H 1.09005 * 109.60690 * 64.27248 * 24 12 11 37 37 H 1.08996 * 109.60848 * 184.77555 * 24 12 11 38 38 H 1.08997 * 109.60823 * 244.54077 * 25 9 7 39 39 H 1.09001 * 109.60822 * 5.04975 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4856 2.0533 -1.4000 5 1 1.4537 2.6491 0.7120 6 1 3.5537 1.4367 0.6880 7 6 2.0101 -1.2022 0.0005 8 1 1.5037 -2.1180 0.2675 9 7 3.3369 -1.2270 -0.3375 10 6 3.8702 -0.2969 -1.3428 11 6 4.5697 -1.1092 -2.4396 12 7 5.4860 -2.0660 -1.8033 13 6 6.7918 -2.0904 -2.1361 14 8 7.5545 -2.8320 -1.5492 15 6 7.2978 -1.2116 -3.2187 16 6 8.6713 -1.0602 -3.3959 17 6 9.1349 -0.2386 -4.4091 18 6 8.1976 0.4061 -5.2230 19 6 8.6417 1.2904 -6.3236 20 7 7.7305 1.9116 -7.0984 21 8 9.8280 1.4564 -6.5287 22 6 6.8362 0.2084 -4.9785 23 7 6.4362 -0.5800 -4.0061 24 6 4.9517 -2.9997 -0.8021 25 6 4.2532 -2.1837 0.2988 26 1 -0.4851 0.8401 -0.0004 27 1 4.5865 0.3774 -0.8738 28 1 3.0552 0.2808 -1.7790 29 1 5.1335 -0.4387 -3.0881 30 1 3.8260 -1.6493 -3.0256 31 1 9.3659 -1.5782 -2.7512 32 1 10.1941 -0.1026 -4.5703 33 1 6.7836 1.7793 -6.9344 34 1 8.0215 2.4908 -7.8199 35 1 6.1046 0.7053 -5.5984 36 1 4.2346 -3.6713 -1.2742 37 1 5.7678 -3.5780 -0.3689 38 1 4.9969 -1.6437 0.8847 39 1 3.6894 -2.8543 0.9473 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957884935.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:41 Heat of formation + Delta-G solvation = 23.220548 kcal Electronic energy + Delta-G solvation = -24776.138817 eV Core-core repulsion = 21106.797380 eV Total energy + Delta-G solvation = -3669.341437 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.28634 -39.86704 -38.74366 -37.11426 -34.37799 -34.18508 -33.03050 -31.86841 -31.37989 -30.55454 -27.48731 -25.69215 -24.16741 -23.53116 -23.08197 -21.74643 -20.94962 -19.48557 -18.59006 -17.88997 -17.36039 -16.64014 -16.28466 -15.66046 -15.62468 -15.43031 -15.14632 -14.84197 -14.68040 -14.34639 -14.09260 -13.80515 -13.69628 -13.43465 -12.92117 -12.76808 -12.51384 -12.10677 -11.86864 -11.20745 -10.98485 -10.76469 -10.45554 -10.40142 -10.38716 -10.22473 -10.20483 -10.10383 -9.63838 -9.63513 -8.94014 -8.83452 -8.35480 -6.91038 -6.01738 -3.44694 -0.08429 0.76128 2.13948 2.86620 2.92438 3.04949 3.23731 3.42084 3.46118 3.54964 3.74309 4.25968 4.29955 4.44926 4.46524 4.54710 4.73968 4.97032 5.20888 5.27932 5.47339 5.53447 5.65191 5.69869 5.84497 5.94366 5.99969 6.06006 6.16565 6.26196 6.42936 6.53154 6.59621 6.73971 6.77952 6.90332 7.22129 7.64737 7.71507 7.93942 8.20920 8.28394 8.86566 9.63715 10.03380 11.14142 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.016887 B = 0.004279 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.705919 B = 6541.609013 C = 7786.048444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.029 3.971 3 Si 0.885 3.115 4 H -0.286 1.286 5 H -0.302 1.302 6 H -0.272 1.272 7 C -0.264 4.264 8 H 0.085 0.915 9 N -0.607 5.607 10 C 0.113 3.887 11 C 0.047 3.953 12 N -0.570 5.570 13 C 0.557 3.443 14 O -0.544 6.544 15 C 0.118 3.882 16 C -0.120 4.120 17 C -0.017 4.017 18 C -0.180 4.180 19 C 0.571 3.429 20 N -0.847 5.847 21 O -0.536 6.536 22 C 0.128 3.872 23 N -0.445 5.445 24 C 0.090 3.910 25 C 0.135 3.865 26 H 0.264 0.736 27 H 0.024 0.976 28 H 0.082 0.918 29 H 0.145 0.855 30 H 0.069 0.931 31 H 0.158 0.842 32 H 0.156 0.844 33 H 0.404 0.596 34 H 0.408 0.592 35 H 0.167 0.833 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.028 0.972 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.774 1.725 -13.075 19.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.171 4.171 3 Si 0.715 3.285 4 H -0.214 1.214 5 H -0.230 1.230 6 H -0.197 1.197 7 C -0.392 4.392 8 H 0.102 0.898 9 N -0.331 5.331 10 C -0.014 4.014 11 C -0.077 4.077 12 N -0.299 5.299 13 C 0.342 3.658 14 O -0.423 6.423 15 C -0.019 4.019 16 C -0.141 4.141 17 C -0.043 4.043 18 C -0.185 4.185 19 C 0.356 3.644 20 N -0.412 5.412 21 O -0.413 6.413 22 C -0.031 4.031 23 N -0.156 5.156 24 C -0.033 4.033 25 C 0.009 3.991 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.100 0.900 29 H 0.161 0.839 30 H 0.088 0.912 31 H 0.176 0.824 32 H 0.173 0.827 33 H 0.233 0.767 34 H 0.240 0.760 35 H 0.184 0.816 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.046 0.954 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.872 1.265 -12.540 19.495 hybrid contribution 0.602 1.393 -0.377 1.563 sum 15.474 2.657 -12.918 20.332 Atomic orbital electron populations 1.69797 1.05738 1.26655 1.52852 1.25414 0.95234 0.97677 0.98762 0.86892 0.79880 0.84404 0.77274 1.21361 1.22958 1.19693 1.18916 0.82875 0.94303 1.43130 0.89760 1.44323 1.06159 1.39904 1.42742 1.21774 0.96978 0.92600 0.90004 1.23797 0.93671 0.93236 0.96956 1.47952 1.07141 1.35207 1.39592 1.17888 0.82693 0.82637 0.82532 1.90752 1.55980 1.41695 1.53841 1.21643 0.90896 0.94745 0.94659 1.22141 0.95766 0.97942 0.98200 1.21780 1.01089 0.90741 0.90701 1.21062 0.95571 1.02361 0.99532 1.18042 0.85722 0.79289 0.81369 1.43733 1.10232 1.50952 1.36233 1.90835 1.16516 1.63186 1.70735 1.23196 0.93082 0.93666 0.93206 1.67729 1.36181 1.07488 1.04242 1.22451 0.98348 0.91950 0.90593 1.21404 0.92646 0.92392 0.92690 0.92655 0.95785 0.90045 0.83900 0.91247 0.82431 0.82674 0.76654 0.76007 0.81598 0.91029 0.89510 0.95412 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.15 13.97 55.49 0.78 -26.38 16 2 C 0.03 0.81 5.26 -17.43 -0.09 0.72 16 3 Si 0.89 21.85 24.39 -169.99 -4.15 17.70 16 4 H -0.29 -6.65 6.63 56.52 0.37 -6.27 16 5 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.27 -6.74 6.74 56.52 0.38 -6.36 16 7 C -0.26 -7.18 10.00 -15.06 -0.15 -7.34 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 9 N -0.61 -14.15 2.66 -171.77 -0.46 -14.61 16 10 C 0.11 2.38 4.36 -3.60 -0.02 2.36 16 11 C 0.05 0.82 6.16 -3.60 -0.02 0.80 16 12 N -0.57 -9.90 2.94 -173.15 -0.51 -10.41 16 13 C 0.56 9.21 7.67 -12.10 -0.09 9.12 16 14 O -0.54 -9.93 15.78 5.37 0.08 -9.85 16 15 C 0.12 1.58 6.60 -82.93 -0.55 1.04 16 16 C -0.12 -1.32 9.61 -39.11 -0.38 -1.70 16 17 C -0.02 -0.16 9.71 -38.90 -0.38 -0.54 16 18 C -0.18 -1.64 5.90 -104.73 -0.62 -2.25 16 19 C 0.57 5.14 8.06 -12.26 -0.10 5.04 16 20 N -0.85 -4.17 8.83 30.57 0.27 -3.90 16 21 O -0.54 -6.79 17.25 5.34 0.09 -6.70 16 22 C 0.13 1.13 10.71 -17.17 -0.18 0.95 16 23 N -0.45 -5.40 6.07 -9.48 -0.06 -5.46 16 24 C 0.09 1.56 6.63 -3.37 -0.02 1.54 16 25 C 0.14 2.67 6.69 -3.37 -0.02 2.65 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.02 0.52 7.12 -51.93 -0.37 0.15 16 28 H 0.08 1.83 4.85 -51.93 -0.25 1.58 16 29 H 0.15 2.20 3.76 -93.17 -0.35 1.85 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.16 1.61 7.68 -52.49 -0.40 1.21 16 32 H 0.16 1.28 7.73 -52.49 -0.41 0.87 16 33 H 0.40 0.96 6.89 -40.82 -0.28 0.68 16 34 H 0.41 1.51 8.93 -40.82 -0.36 1.15 16 35 H 0.17 0.81 6.41 -52.49 -0.34 0.47 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.09 1.43 6.99 -51.93 -0.36 1.06 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 1.46 7.93 -51.93 -0.41 1.05 16 LS Contribution 318.78 15.07 4.80 4.80 Total: -1.00 -35.10 318.78 -6.17 -41.27 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -4.41 Total: 1.16 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: -2.62 Total: 12.38 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: 0.02 Total: -60.76 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.18 Total: -16.55 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.15 Total: 17.70 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.10 -6.17 -41.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957884935.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.495 kcal (2) G-P(sol) polarization free energy of solvation -35.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds