Wall clock time and date at job start Fri Apr 10 2020 17:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00099 * 2 1 4 4 H 1.48501 * 109.46999 * 270.57052 * 3 2 1 5 5 H 1.48499 * 109.47203 * 30.56740 * 3 2 1 6 6 H 1.48504 * 109.47292 * 150.56956 * 3 2 1 7 7 C 1.38809 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00594 * 343.44004 * 7 2 1 9 9 N 1.36944 * 119.99702 * 163.43836 * 7 2 1 10 10 C 1.46966 * 120.59379 * 326.46176 * 9 7 2 11 11 C 1.53368 * 108.63308 * 235.20630 * 10 9 7 12 12 N 1.46965 * 108.63704 * 310.57260 * 11 10 9 13 13 C 1.34776 * 120.59404 * 235.20659 * 12 11 10 14 14 O 1.21494 * 119.99623 * 175.76877 * 13 12 11 15 15 C 1.48336 * 119.99972 * 355.77304 * 13 12 11 16 16 C 1.39308 * 119.56942 * 168.42444 * 15 13 12 17 17 C 1.38447 * 119.18767 * 179.97438 * 16 15 13 18 18 C 1.39866 * 118.36031 * 359.73231 * 17 16 15 19 19 C 1.48009 * 120.46648 * 180.25998 * 18 17 16 20 20 N 1.34771 * 120.00165 * 180.28824 * 19 18 17 21 21 O 1.21528 * 119.99663 * 0.29146 * 19 18 17 22 22 C 1.39729 * 119.07261 * 0.54946 * 18 17 16 23 23 N 1.31415 * 120.71943 * 359.43382 * 22 18 17 24 24 C 1.46963 * 118.80931 * 55.47795 * 12 11 10 25 25 C 1.46965 * 120.59694 * 146.44054 * 9 7 2 26 26 H 0.97008 * 120.00189 * 0.02562 * 1 2 3 27 27 H 1.08991 * 109.61137 * 115.45680 * 10 9 7 28 28 H 1.09003 * 109.74713 * 355.02992 * 10 9 7 29 29 H 1.09001 * 109.60763 * 190.83020 * 11 10 9 30 30 H 1.09002 * 109.61013 * 70.32170 * 11 10 9 31 31 H 1.07996 * 120.40203 * 0.02562 * 16 15 13 32 32 H 1.08001 * 120.81994 * 180.02562 * 17 16 15 33 33 H 0.97005 * 120.00084 * 0.02562 * 20 19 18 34 34 H 0.97000 * 120.00202 * 180.02562 * 20 19 18 35 35 H 1.08002 * 119.64051 * 179.71193 * 22 18 17 36 36 H 1.09005 * 109.60690 * 64.27248 * 24 12 11 37 37 H 1.08996 * 109.60848 * 184.77555 * 24 12 11 38 38 H 1.08997 * 109.60823 * 244.54077 * 25 9 7 39 39 H 1.09001 * 109.60822 * 5.04975 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4856 2.0533 -1.4000 5 1 1.4537 2.6491 0.7120 6 1 3.5537 1.4367 0.6880 7 6 2.0101 -1.2022 0.0005 8 1 1.5037 -2.1180 0.2675 9 7 3.3369 -1.2270 -0.3375 10 6 3.8702 -0.2969 -1.3428 11 6 4.5697 -1.1092 -2.4396 12 7 5.4860 -2.0660 -1.8033 13 6 6.7918 -2.0904 -2.1361 14 8 7.5545 -2.8320 -1.5492 15 6 7.2978 -1.2116 -3.2187 16 6 8.6713 -1.0602 -3.3959 17 6 9.1349 -0.2386 -4.4091 18 6 8.1976 0.4061 -5.2230 19 6 8.6417 1.2904 -6.3236 20 7 7.7305 1.9116 -7.0984 21 8 9.8280 1.4564 -6.5287 22 6 6.8362 0.2084 -4.9785 23 7 6.4362 -0.5800 -4.0061 24 6 4.9517 -2.9997 -0.8021 25 6 4.2532 -2.1837 0.2988 26 1 -0.4851 0.8401 -0.0004 27 1 4.5865 0.3774 -0.8738 28 1 3.0552 0.2808 -1.7790 29 1 5.1335 -0.4387 -3.0881 30 1 3.8260 -1.6493 -3.0256 31 1 9.3659 -1.5782 -2.7512 32 1 10.1941 -0.1026 -4.5703 33 1 6.7836 1.7793 -6.9344 34 1 8.0215 2.4908 -7.8199 35 1 6.1046 0.7053 -5.5984 36 1 4.2346 -3.6713 -1.2742 37 1 5.7678 -3.5780 -0.3689 38 1 4.9969 -1.6437 0.8847 39 1 3.6894 -2.8543 0.9473 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957884935.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:40 Heat of formation + Delta-G solvation = -4.587770 kcal Electronic energy + Delta-G solvation = -24777.344676 eV Core-core repulsion = 21106.797380 eV Total energy + Delta-G solvation = -3670.547296 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.21126 -40.88974 -39.71364 -38.64828 -35.77967 -35.01333 -34.09684 -33.38748 -32.65242 -31.95908 -29.07717 -26.84138 -25.13305 -25.09375 -24.49430 -22.93239 -21.97646 -20.86348 -19.34281 -19.15152 -18.41848 -17.85209 -17.62177 -17.05449 -16.72637 -16.43451 -16.18160 -16.03441 -15.92323 -15.73277 -15.49556 -14.93567 -14.84673 -14.55833 -14.48239 -14.11672 -13.94443 -13.82526 -13.32990 -12.81067 -12.49561 -12.30102 -12.09284 -11.88099 -11.66064 -11.55101 -11.42764 -11.17521 -10.82352 -10.79066 -10.46018 -10.06736 -9.89089 -8.78828 -8.17738 -5.57886 -0.94306 -0.00196 1.22941 1.28109 1.41676 1.50626 1.80358 1.92901 2.34465 2.40343 2.66301 2.78873 3.11890 3.31582 3.41116 3.54283 3.70038 3.85122 3.89483 4.13975 4.14769 4.33676 4.42875 4.52075 4.57791 4.64213 4.74191 4.80115 4.81818 4.95464 5.04091 5.14872 5.34937 5.61208 5.80658 5.88506 6.11986 6.26855 6.31013 6.44054 6.88553 6.93954 7.18213 7.56642 8.00305 9.01997 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.016887 B = 0.004279 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.705919 B = 6541.609013 C = 7786.048444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.024 4.024 3 Si 0.946 3.054 4 H -0.259 1.259 5 H -0.309 1.309 6 H -0.273 1.273 7 C -0.255 4.255 8 H 0.052 0.948 9 N -0.621 5.621 10 C 0.109 3.891 11 C 0.061 3.939 12 N -0.580 5.580 13 C 0.558 3.442 14 O -0.566 6.566 15 C 0.095 3.905 16 C -0.114 4.114 17 C -0.013 4.013 18 C -0.171 4.171 19 C 0.572 3.428 20 N -0.824 5.824 21 O -0.577 6.577 22 C 0.139 3.861 23 N -0.464 5.464 24 C 0.100 3.900 25 C 0.134 3.866 26 H 0.264 0.736 27 H 0.025 0.975 28 H 0.068 0.932 29 H 0.172 0.828 30 H 0.064 0.936 31 H 0.161 0.839 32 H 0.168 0.832 33 H 0.419 0.581 34 H 0.418 0.582 35 H 0.209 0.791 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.028 0.972 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.552 3.192 -15.257 22.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.220 4.220 3 Si 0.775 3.225 4 H -0.185 1.185 5 H -0.238 1.238 6 H -0.198 1.198 7 C -0.385 4.385 8 H 0.069 0.931 9 N -0.346 5.346 10 C -0.017 4.017 11 C -0.063 4.063 12 N -0.309 5.309 13 C 0.345 3.655 14 O -0.446 6.446 15 C -0.041 4.041 16 C -0.135 4.135 17 C -0.040 4.040 18 C -0.176 4.176 19 C 0.356 3.644 20 N -0.388 5.388 21 O -0.457 6.457 22 C -0.021 4.021 23 N -0.175 5.175 24 C -0.024 4.024 25 C 0.008 3.992 26 H 0.073 0.927 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.187 0.813 30 H 0.082 0.918 31 H 0.179 0.821 32 H 0.186 0.814 33 H 0.252 0.748 34 H 0.251 0.749 35 H 0.225 0.775 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.046 0.954 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.657 2.728 -14.760 22.422 hybrid contribution 0.107 0.886 0.221 0.919 sum 16.764 3.614 -14.539 22.483 Atomic orbital electron populations 1.69925 1.07384 1.27408 1.55247 1.26007 0.95794 1.00942 0.99264 0.85898 0.78039 0.80086 0.78509 1.18470 1.23789 1.19841 1.18828 0.84590 0.93176 1.41863 0.93069 1.44445 1.05282 1.40933 1.43966 1.21834 0.96653 0.92735 0.90456 1.23756 0.93681 0.93263 0.95556 1.48001 1.07713 1.35378 1.39852 1.18314 0.81915 0.82472 0.82761 1.90729 1.56307 1.42705 1.54871 1.21221 0.91791 0.96125 0.94964 1.22149 0.94820 0.98004 0.98532 1.21954 1.01992 0.89981 0.90033 1.21196 0.95708 1.01625 0.99121 1.18003 0.85525 0.79328 0.81507 1.43587 1.10575 1.49476 1.35210 1.90832 1.18265 1.64727 1.71881 1.23753 0.93848 0.92173 0.92293 1.67355 1.36450 1.08426 1.05287 1.22251 0.98432 0.91666 0.90070 1.21490 0.92130 0.91990 0.93557 0.92730 0.95744 0.91356 0.81253 0.91775 0.82113 0.81447 0.74839 0.74911 0.77455 0.90951 0.88510 0.95369 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.40 13.97 21.65 0.30 -58.10 16 2 C -0.02 -1.39 5.26 84.86 0.45 -0.95 16 3 Si 0.95 45.06 24.39 68.60 1.67 46.73 16 4 H -0.26 -11.10 6.63 99.48 0.66 -10.44 16 5 H -0.31 -15.01 7.11 99.48 0.71 -14.31 16 6 H -0.27 -12.94 6.74 99.48 0.67 -12.27 16 7 C -0.26 -14.19 10.00 84.03 0.84 -13.35 16 8 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 9 N -0.62 -28.93 2.66 -697.37 -1.86 -30.79 16 10 C 0.11 4.44 4.36 86.41 0.38 4.82 16 11 C 0.06 2.01 6.16 86.41 0.53 2.54 16 12 N -0.58 -19.45 2.94 -820.02 -2.41 -21.86 16 13 C 0.56 17.69 7.67 86.93 0.67 18.36 16 14 O -0.57 -20.14 15.78 -3.70 -0.06 -20.20 16 15 C 0.09 2.35 6.60 41.96 0.28 2.62 16 16 C -0.11 -2.29 9.61 22.58 0.22 -2.07 16 17 C -0.01 -0.22 9.71 22.71 0.22 0.00 16 18 C -0.17 -2.51 5.90 -19.93 -0.12 -2.63 16 19 C 0.57 8.35 8.06 86.84 0.70 9.05 16 20 N -0.82 -4.74 8.83 -175.50 -1.55 -6.29 16 21 O -0.58 -13.26 17.25 -3.81 -0.07 -13.33 16 22 C 0.14 1.87 10.71 85.12 0.91 2.79 16 23 N -0.46 -9.81 6.07 -183.90 -1.12 -10.93 16 24 C 0.10 3.40 6.63 86.56 0.57 3.97 16 25 C 0.13 5.29 6.69 86.56 0.58 5.87 16 26 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 27 H 0.02 1.01 7.12 -2.39 -0.02 0.99 16 28 H 0.07 2.96 4.85 -2.39 -0.01 2.95 16 29 H 0.17 4.75 3.76 -83.81 -0.32 4.43 16 30 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.16 3.05 7.68 -2.91 -0.02 3.03 16 32 H 0.17 2.35 7.73 -2.91 -0.02 2.33 16 33 H 0.42 -0.10 6.89 -92.70 -0.64 -0.74 16 34 H 0.42 1.51 8.93 -92.71 -0.83 0.68 16 35 H 0.21 0.86 6.41 -2.91 -0.02 0.84 16 36 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 37 H 0.10 3.11 6.99 -2.39 -0.02 3.10 16 38 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 2.96 7.93 -2.39 -0.02 2.94 16 Total: -1.00 -77.31 318.78 0.42 -76.90 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -0.73 Total: 6.82 kcal Atomic # 6 Polarization: 24.81 SS G_CDS: 6.22 Total: 31.03 kcal Atomic # 7 Polarization: -121.32 SS G_CDS: -6.63 Total: -127.95 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -0.12 Total: -33.52 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.67 Total: 46.73 kcal Total: -77.31 0.42 -76.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957884935.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.309 kcal (2) G-P(sol) polarization free energy of solvation -77.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds