Wall clock time and date at job start Fri Apr 10 2020 17:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.36354 * 125.84299 * 99.45606 * 3 2 1 5 5 C 1.41426 * 107.01631 * 179.97438 * 4 3 2 6 6 C 1.47370 * 126.47042 * 179.97438 * 5 4 3 7 7 O 1.21610 * 119.99975 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99729 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99540 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.47221 * 180.02562 * 9 8 6 11 11 H 1.09001 * 110.88044 * 305.69996 * 10 9 8 12 12 C 1.54909 * 111.00390 * 69.57789 * 10 9 8 13 13 N 1.47424 * 104.82911 * 155.08548 * 12 10 9 14 14 C 1.36937 * 125.64561 * 155.90677 * 13 12 10 15 15 H 1.08002 * 120.00183 * 353.94161 * 14 13 12 16 16 C 1.38813 * 120.00211 * 173.94175 * 14 13 12 17 17 N 1.31620 * 119.99750 * 6.84708 * 16 14 13 18 18 Si 1.86802 * 120.00153 * 186.85036 * 16 14 13 19 19 H 1.48498 * 109.47008 * 94.98483 * 18 16 14 20 20 H 1.48502 * 109.46991 * 214.98273 * 18 16 14 21 21 H 1.48493 * 109.46974 * 334.98463 * 18 16 14 22 22 C 1.47021 * 108.70393 * 335.87533 * 13 12 10 23 23 C 1.54367 * 107.29106 * 1.09063 * 22 13 12 24 24 H 1.08993 * 110.75485 * 140.50906 * 23 22 13 25 25 O 1.42903 * 110.70489 * 263.79662 * 23 22 13 26 26 C 1.38126 * 107.06283 * 0.22222 * 5 4 3 27 27 N 1.34441 * 108.38634 * 359.62961 * 26 5 4 28 28 H 0.96997 * 125.38953 * 180.16730 * 27 26 5 29 29 H 1.08002 * 126.49493 * 359.96941 * 4 3 2 30 30 H 0.96997 * 120.00419 * 0.02562 * 8 6 5 31 31 H 1.09001 * 109.47465 * 300.00121 * 9 8 6 32 32 H 1.09003 * 109.47635 * 60.00043 * 9 8 6 33 33 H 1.09002 * 110.36648 * 273.92500 * 12 10 9 34 34 H 1.08997 * 110.36504 * 36.25038 * 12 10 9 35 35 H 0.97000 * 120.00256 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.88243 * 120.47557 * 22 13 12 37 37 H 1.08997 * 109.87996 * 241.48667 * 22 13 12 38 38 H 0.96701 * 114.00141 * 293.48580 * 25 23 22 39 39 H 1.08004 * 125.80908 * 179.77012 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3663 0.1826 -1.0903 5 6 4.7050 0.1088 -0.6400 6 6 5.9164 0.2469 -1.4677 7 8 5.8166 0.4456 -2.6633 8 7 7.1350 0.1540 -0.8993 9 6 8.3393 0.2918 -1.7220 10 6 9.5800 0.1460 -0.8385 11 1 9.5466 0.8455 -0.0033 12 6 9.7361 -1.3112 -0.3366 13 7 11.1762 -1.4628 -0.0601 14 6 11.7316 -2.3659 0.8066 15 1 11.0961 -2.9784 1.4290 16 6 13.1116 -2.4942 0.8852 17 7 13.8886 -1.6585 0.2293 18 14 13.8658 -3.8531 1.9217 19 1 14.1606 -5.0265 1.0608 20 1 15.1244 -3.3637 2.5395 21 1 12.9119 -4.2491 2.9886 22 6 11.9173 -0.4844 -0.8694 23 6 10.8782 0.3317 -1.6677 24 1 11.1622 1.3831 -1.7094 25 8 10.7186 -0.2029 -2.9834 26 6 4.6626 -0.1227 0.7210 27 7 3.3744 -0.1817 1.1012 28 1 3.0624 -0.3322 2.0072 29 1 3.0386 0.3511 -2.1055 30 1 7.2147 -0.0042 0.0544 31 1 8.3465 -0.4832 -2.4885 32 1 8.3445 1.2728 -2.1972 33 1 9.1568 -1.4628 0.5742 34 1 9.4220 -2.0139 -1.1084 35 1 14.8529 -1.7483 0.2839 36 1 12.4879 0.1784 -0.2190 37 1 12.5901 -1.0024 -1.5529 38 1 11.5022 -0.1120 -3.5426 39 1 5.5186 -0.2349 1.3699 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957970549.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:55 Heat of formation + Delta-G solvation = 19.805936 kcal Electronic energy + Delta-G solvation = -23716.915586 eV Core-core repulsion = 20047.426080 eV Total energy + Delta-G solvation = -3669.489506 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.85831 -39.29200 -38.15664 -36.83910 -34.90977 -34.54807 -32.28937 -31.77997 -30.46929 -29.36291 -27.72287 -25.62030 -24.05187 -22.95439 -22.40249 -20.46811 -20.42749 -20.00256 -19.21336 -17.36231 -16.73280 -16.56852 -16.03910 -15.54083 -15.39386 -14.85617 -14.79602 -14.54142 -14.03623 -13.84046 -13.71650 -13.48649 -13.41575 -13.16645 -12.94167 -12.69137 -12.63816 -12.57098 -11.86126 -11.43696 -11.25212 -10.85398 -10.65038 -10.49004 -10.17769 -10.07374 -9.86099 -9.75222 -9.55505 -9.20018 -8.92155 -8.71531 -8.67231 -6.89177 -5.79571 -3.11457 0.95601 1.56042 1.85910 2.72942 2.99729 3.24793 3.35781 3.41180 3.43027 3.49495 3.67846 4.43218 4.49964 4.58461 4.70646 4.87573 5.11320 5.29617 5.32788 5.43817 5.51616 5.55408 5.59765 5.90318 6.04367 6.07862 6.11308 6.20045 6.38406 6.39215 6.49133 6.62704 6.69740 6.88684 7.02389 7.33036 7.48552 7.64903 7.70875 8.17531 8.22815 8.37009 9.14267 9.75460 10.41518 11.32859 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.020567 B = 0.002825 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.047378 B = 9908.217516 C =11049.331093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C 0.281 3.719 3 C 0.040 3.960 4 C -0.047 4.047 5 C -0.220 4.220 6 C 0.585 3.415 7 O -0.543 6.543 8 N -0.724 5.724 9 C 0.142 3.858 10 C -0.109 4.109 11 H 0.088 0.912 12 C 0.145 3.855 13 N -0.603 5.603 14 C -0.228 4.228 15 H 0.078 0.922 16 C -0.008 4.008 17 N -0.922 5.922 18 Si 0.911 3.089 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.152 3.848 23 C 0.083 3.917 24 H 0.057 0.943 25 O -0.563 6.563 26 C 0.085 3.915 27 N -0.520 5.520 28 H 0.427 0.573 29 H 0.161 0.839 30 H 0.397 0.603 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.035 0.965 34 H 0.027 0.973 35 H 0.252 0.748 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.375 0.625 39 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.355 6.077 1.834 16.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.084 5.084 2 C -0.035 4.035 3 C -0.072 4.072 4 C -0.075 4.075 5 C -0.230 4.230 6 C 0.372 3.628 7 O -0.421 6.421 8 N -0.374 5.374 9 C 0.018 3.982 10 C -0.129 4.129 11 H 0.106 0.894 12 C 0.019 3.981 13 N -0.330 5.330 14 C -0.356 4.356 15 H 0.096 0.904 16 C -0.204 4.204 17 N -0.570 5.570 18 Si 0.741 3.259 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.206 1.206 22 C 0.027 3.973 23 C 0.023 3.977 24 H 0.075 0.925 25 O -0.369 6.369 26 C -0.057 4.057 27 N -0.114 5.114 28 H 0.265 0.735 29 H 0.178 0.822 30 H 0.231 0.769 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.222 0.778 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -17.633 5.990 1.416 18.676 hybrid contribution 1.550 -0.762 1.377 2.209 sum -16.083 5.228 2.793 17.141 Atomic orbital electron populations 1.81331 1.11279 1.10312 1.05473 1.24286 0.90802 0.93370 0.94999 1.15160 0.83285 1.20329 0.88390 1.21112 0.90393 0.98172 0.97861 1.19719 0.94119 1.16291 0.92863 1.17288 0.82173 0.76521 0.86817 1.90794 1.86851 1.49496 1.14928 1.45930 1.05765 1.73592 1.12140 1.21173 0.81335 1.02351 0.93290 1.22682 0.92820 1.00066 0.97344 0.89381 1.21576 0.87460 0.92119 0.96942 1.44369 0.99686 1.40222 1.48701 1.19057 0.90063 1.12493 1.14001 0.90378 1.24818 0.96033 0.99180 1.00384 1.69942 1.03300 1.37322 1.46398 0.86114 0.78688 0.81688 0.79363 1.21592 1.21797 1.20648 1.21875 0.91187 0.90832 0.93435 1.23109 0.95753 0.95939 0.82937 0.92524 1.86409 1.41796 1.84350 1.24310 1.22597 0.86300 1.00925 0.95868 1.41567 1.05688 1.54292 1.09813 0.73491 0.82166 0.76929 0.90178 0.91721 0.94663 0.95555 0.93718 0.93386 0.92923 0.77779 0.79367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.49 18.54 41.84 0.78 -3.71 16 2 C 0.28 2.47 15.88 -22.47 -0.36 2.11 16 3 C 0.04 0.29 6.90 -83.98 -0.58 -0.29 16 4 C -0.05 -0.42 10.59 -39.05 -0.41 -0.83 16 5 C -0.22 -2.04 6.13 -105.01 -0.64 -2.69 16 6 C 0.59 7.47 7.81 -12.54 -0.10 7.38 16 7 O -0.54 -9.21 16.92 5.27 0.09 -9.12 16 8 N -0.72 -8.38 5.44 -61.39 -0.33 -8.71 16 9 C 0.14 2.03 4.67 -4.04 -0.02 2.01 16 10 C -0.11 -1.71 2.99 -88.47 -0.26 -1.97 16 11 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 12 C 0.15 2.76 6.55 -2.53 -0.02 2.74 16 13 N -0.60 -14.56 3.39 -170.05 -0.58 -15.14 16 14 C -0.23 -6.08 10.26 -15.06 -0.15 -6.24 16 15 H 0.08 2.00 7.84 -52.49 -0.41 1.59 16 16 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 17 N -0.92 -26.09 10.36 55.49 0.57 -25.51 16 18 Si 0.91 21.40 29.56 -169.99 -5.02 16.37 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 C 0.15 3.43 5.15 -3.04 -0.02 3.42 16 23 C 0.08 1.43 4.09 -24.87 -0.10 1.32 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 O -0.56 -9.44 12.17 -35.23 -0.43 -9.87 16 26 C 0.09 0.46 11.43 -16.45 -0.19 0.28 16 27 N -0.52 -2.40 6.02 -10.29 -0.06 -2.46 16 28 H 0.43 0.66 8.96 -40.82 -0.37 0.29 16 29 H 0.16 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.40 3.47 7.34 -40.82 -0.30 3.17 16 31 H 0.08 1.35 7.49 -51.93 -0.39 0.96 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.54 7.96 -51.93 -0.41 0.13 16 35 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.05 1.19 7.54 -51.93 -0.39 0.80 16 37 H 0.05 1.34 7.29 -51.93 -0.38 0.96 16 38 H 0.38 4.96 9.12 45.56 0.42 5.38 16 39 H 0.19 0.42 7.44 -52.48 -0.39 0.03 16 LS Contribution 341.57 15.07 5.15 5.15 Total: -1.00 -35.46 341.57 -6.66 -42.12 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -3.87 Total: 3.96 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: -2.95 Total: 6.93 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.38 Total: -55.54 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.34 Total: -18.99 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.46 -6.66 -42.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957970549.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.928 kcal (2) G-P(sol) polarization free energy of solvation -35.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds