Wall clock time and date at job start Fri Apr 10 2020 17:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.36354 * 125.84299 * 99.45606 * 3 2 1 5 5 C 1.41426 * 107.01631 * 179.97438 * 4 3 2 6 6 C 1.47370 * 126.47042 * 179.97438 * 5 4 3 7 7 O 1.21610 * 119.99975 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99729 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99540 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.47221 * 180.02562 * 9 8 6 11 11 H 1.09001 * 110.88044 * 305.69996 * 10 9 8 12 12 C 1.54909 * 111.00390 * 69.57789 * 10 9 8 13 13 N 1.47424 * 104.82911 * 155.08548 * 12 10 9 14 14 C 1.36937 * 125.64561 * 155.90677 * 13 12 10 15 15 H 1.08002 * 120.00183 * 353.94161 * 14 13 12 16 16 C 1.38813 * 120.00211 * 173.94175 * 14 13 12 17 17 N 1.31620 * 119.99750 * 6.84708 * 16 14 13 18 18 Si 1.86802 * 120.00153 * 186.85036 * 16 14 13 19 19 H 1.48498 * 109.47008 * 94.98483 * 18 16 14 20 20 H 1.48502 * 109.46991 * 214.98273 * 18 16 14 21 21 H 1.48493 * 109.46974 * 334.98463 * 18 16 14 22 22 C 1.47021 * 108.70393 * 335.87533 * 13 12 10 23 23 C 1.54367 * 107.29106 * 1.09063 * 22 13 12 24 24 H 1.08993 * 110.75485 * 140.50906 * 23 22 13 25 25 O 1.42903 * 110.70489 * 263.79662 * 23 22 13 26 26 C 1.38126 * 107.06283 * 0.22222 * 5 4 3 27 27 N 1.34441 * 108.38634 * 359.62961 * 26 5 4 28 28 H 0.96997 * 125.38953 * 180.16730 * 27 26 5 29 29 H 1.08002 * 126.49493 * 359.96941 * 4 3 2 30 30 H 0.96997 * 120.00419 * 0.02562 * 8 6 5 31 31 H 1.09001 * 109.47465 * 300.00121 * 9 8 6 32 32 H 1.09003 * 109.47635 * 60.00043 * 9 8 6 33 33 H 1.09002 * 110.36648 * 273.92500 * 12 10 9 34 34 H 1.08997 * 110.36504 * 36.25038 * 12 10 9 35 35 H 0.97000 * 120.00256 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.88243 * 120.47557 * 22 13 12 37 37 H 1.08997 * 109.87996 * 241.48667 * 22 13 12 38 38 H 0.96701 * 114.00141 * 293.48580 * 25 23 22 39 39 H 1.08004 * 125.80908 * 179.77012 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3663 0.1826 -1.0903 5 6 4.7050 0.1088 -0.6400 6 6 5.9164 0.2469 -1.4677 7 8 5.8166 0.4456 -2.6633 8 7 7.1350 0.1540 -0.8993 9 6 8.3393 0.2918 -1.7220 10 6 9.5800 0.1460 -0.8385 11 1 9.5466 0.8455 -0.0033 12 6 9.7361 -1.3112 -0.3366 13 7 11.1762 -1.4628 -0.0601 14 6 11.7316 -2.3659 0.8066 15 1 11.0961 -2.9784 1.4290 16 6 13.1116 -2.4942 0.8852 17 7 13.8886 -1.6585 0.2293 18 14 13.8658 -3.8531 1.9217 19 1 14.1606 -5.0265 1.0608 20 1 15.1244 -3.3637 2.5395 21 1 12.9119 -4.2491 2.9886 22 6 11.9173 -0.4844 -0.8694 23 6 10.8782 0.3317 -1.6677 24 1 11.1622 1.3831 -1.7094 25 8 10.7186 -0.2029 -2.9834 26 6 4.6626 -0.1227 0.7210 27 7 3.3744 -0.1817 1.1012 28 1 3.0624 -0.3322 2.0072 29 1 3.0386 0.3511 -2.1055 30 1 7.2147 -0.0042 0.0544 31 1 8.3465 -0.4832 -2.4885 32 1 8.3445 1.2728 -2.1972 33 1 9.1568 -1.4628 0.5742 34 1 9.4220 -2.0139 -1.1084 35 1 14.8529 -1.7483 0.2839 36 1 12.4879 0.1784 -0.2190 37 1 12.5901 -1.0024 -1.5529 38 1 11.5022 -0.1120 -3.5426 39 1 5.5186 -0.2349 1.3699 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957970549.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:55 Heat of formation + Delta-G solvation = -8.856271 kcal Electronic energy + Delta-G solvation = -23718.158472 eV Core-core repulsion = 20047.426080 eV Total energy + Delta-G solvation = -3670.732392 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.44658 -40.42904 -39.50688 -37.59345 -36.33931 -35.91540 -33.89209 -32.54268 -31.52660 -30.53517 -29.29355 -27.19584 -25.47969 -23.61393 -23.39403 -22.07400 -21.27641 -20.99041 -20.28460 -19.04286 -18.11894 -17.36274 -16.98608 -16.72677 -16.35784 -16.31827 -15.80680 -15.59787 -15.31810 -15.17365 -14.90328 -14.57231 -14.32552 -14.22072 -14.08115 -13.96940 -13.65742 -13.44728 -13.25347 -13.08275 -13.00465 -12.63976 -12.27582 -11.98396 -11.83280 -11.70710 -11.49406 -10.92445 -10.73593 -10.64589 -10.22944 -9.89291 -9.35491 -8.84101 -7.82945 -5.15972 0.38192 0.83684 1.24251 1.48855 1.51330 1.59080 2.12939 2.30406 2.33977 2.52467 2.65166 3.07900 3.35241 3.41406 3.66352 3.88209 4.01081 4.02688 4.11884 4.18616 4.27776 4.54083 4.62397 4.70043 4.79220 4.94902 4.96329 5.06628 5.12913 5.42487 5.45995 5.46724 5.56103 5.59292 5.63250 5.76888 6.22924 6.26503 6.42639 6.77617 6.99237 7.13801 7.44994 7.81758 8.46507 9.27978 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.020567 B = 0.002825 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.047378 B = 9908.217516 C =11049.331093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.304 3.696 3 C 0.038 3.962 4 C -0.058 4.058 5 C -0.255 4.255 6 C 0.585 3.415 7 O -0.595 6.595 8 N -0.712 5.712 9 C 0.157 3.843 10 C -0.090 4.090 11 H 0.113 0.887 12 C 0.142 3.858 13 N -0.625 5.625 14 C -0.236 4.236 15 H 0.087 0.913 16 C -0.068 4.068 17 N -0.951 5.951 18 Si 0.973 3.027 19 H -0.294 1.294 20 H -0.297 1.297 21 H -0.264 1.264 22 C 0.158 3.842 23 C 0.093 3.907 24 H 0.086 0.914 25 O -0.571 6.571 26 C 0.128 3.872 27 N -0.499 5.499 28 H 0.446 0.554 29 H 0.150 0.850 30 H 0.414 0.586 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.010 0.990 35 H 0.245 0.755 36 H 0.019 0.981 37 H 0.013 0.987 38 H 0.389 0.611 39 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.460 6.207 4.046 18.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.010 4.010 3 C -0.073 4.073 4 C -0.086 4.086 5 C -0.264 4.264 6 C 0.375 3.625 7 O -0.477 6.477 8 N -0.363 5.363 9 C 0.033 3.967 10 C -0.110 4.110 11 H 0.131 0.869 12 C 0.017 3.983 13 N -0.351 5.351 14 C -0.365 4.365 15 H 0.104 0.896 16 C -0.260 4.260 17 N -0.600 5.600 18 Si 0.802 3.198 19 H -0.221 1.221 20 H -0.224 1.224 21 H -0.188 1.188 22 C 0.033 3.967 23 C 0.032 3.968 24 H 0.104 0.896 25 O -0.379 6.379 26 C -0.016 4.016 27 N -0.094 5.094 28 H 0.288 0.712 29 H 0.168 0.832 30 H 0.251 0.749 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.028 0.972 35 H 0.055 0.945 36 H 0.037 0.963 37 H 0.031 0.969 38 H 0.238 0.762 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -18.794 6.111 3.680 20.102 hybrid contribution 1.897 -0.830 0.674 2.178 sum -16.897 5.281 4.353 18.230 Atomic orbital electron populations 1.81356 1.12521 1.11968 1.06901 1.24353 0.90861 0.92142 0.93691 1.14874 0.82512 1.20984 0.88935 1.21130 0.90938 0.98463 0.98111 1.19430 0.92548 1.20026 0.94415 1.17724 0.83095 0.75225 0.86452 1.90767 1.87555 1.52005 1.17337 1.45711 1.04673 1.73210 1.12738 1.20805 0.81799 1.01444 0.92679 1.22580 0.92468 0.98210 0.97725 0.86885 1.21721 0.84959 0.93945 0.97632 1.44700 1.02090 1.40043 1.48284 1.19481 0.90448 1.12606 1.13984 0.89555 1.25623 0.96763 1.01399 1.02257 1.70154 1.02898 1.38853 1.48124 0.85125 0.77756 0.78722 0.78161 1.22128 1.22384 1.18791 1.21690 0.92120 0.90343 0.92567 1.22995 0.94998 0.96243 0.82531 0.89644 1.86395 1.42806 1.84538 1.24140 1.23101 0.87338 0.96632 0.94568 1.41566 1.05086 1.52648 1.10126 0.71179 0.83208 0.74904 0.92974 0.91524 0.92119 0.97178 0.94528 0.96272 0.96857 0.76154 0.75194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.66 18.54 19.00 0.35 -9.31 16 2 C 0.30 4.95 15.88 88.33 1.40 6.36 16 3 C 0.04 0.48 6.90 39.03 0.27 0.75 16 4 C -0.06 -0.96 10.59 22.62 0.24 -0.72 16 5 C -0.25 -4.11 6.13 -20.12 -0.12 -4.24 16 6 C 0.59 14.06 7.81 86.65 0.68 14.74 16 7 O -0.59 -20.25 16.92 -4.06 -0.07 -20.32 16 8 N -0.71 -14.54 5.44 -466.40 -2.54 -17.07 16 9 C 0.16 4.19 4.67 86.38 0.40 4.59 16 10 C -0.09 -2.59 2.99 -9.40 -0.03 -2.62 16 11 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 12 C 0.14 5.14 6.55 86.86 0.57 5.71 16 13 N -0.62 -29.88 3.39 -691.91 -2.35 -32.23 16 14 C -0.24 -12.49 10.26 84.03 0.86 -11.63 16 15 H 0.09 4.29 7.84 -2.91 -0.02 4.27 16 16 C -0.07 -3.70 5.48 84.86 0.47 -3.23 16 17 N -0.95 -55.15 10.36 21.65 0.22 -54.93 16 18 Si 0.97 44.04 29.56 68.60 2.03 46.07 16 19 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 20 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 21 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 22 C 0.16 7.24 5.15 86.74 0.45 7.69 16 23 C 0.09 3.07 4.09 31.80 0.13 3.20 16 24 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 25 O -0.57 -18.75 12.17 -148.98 -1.81 -20.57 16 26 C 0.13 0.80 11.43 84.27 0.96 1.77 16 27 N -0.50 -2.58 6.02 -186.46 -1.12 -3.70 16 28 H 0.45 -0.71 8.96 -92.71 -0.83 -1.54 16 29 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 30 H 0.41 5.43 7.34 -92.71 -0.68 4.75 16 31 H 0.05 1.72 7.49 -2.39 -0.02 1.70 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.01 0.41 7.96 -2.39 -0.02 0.39 16 35 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 36 H 0.02 0.97 7.54 -2.39 -0.02 0.95 16 37 H 0.01 0.70 7.29 -2.39 -0.02 0.68 16 38 H 0.39 10.15 9.12 -74.06 -0.68 9.47 16 39 H 0.23 -0.52 7.44 -2.91 -0.02 -0.54 16 Total: -1.00 -80.79 341.57 -0.06 -80.86 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -1.05 Total: 8.83 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: 6.28 Total: 22.36 kcal Atomic # 7 Polarization: -111.81 SS G_CDS: -5.43 Total: -117.24 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -1.88 Total: -40.89 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -80.79 -0.06 -80.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957970549.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.001 kcal (2) G-P(sol) polarization free energy of solvation -80.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds