Wall clock time and date at job start Fri Apr 10 2020 17:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.36363 * 125.84088 * 119.11386 * 3 2 1 5 5 C 1.41431 * 107.00907 * 180.15402 * 4 3 2 6 6 C 1.47378 * 126.46545 * 179.89261 * 5 4 3 7 7 O 1.21615 * 120.00044 * 359.71315 * 6 5 4 8 8 N 1.34775 * 119.99920 * 179.71032 * 6 5 4 9 9 C 1.46500 * 120.00052 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47093 * 180.02562 * 9 8 6 11 11 H 1.08997 * 110.64041 * 303.31206 * 10 9 8 12 12 C 1.54316 * 110.72011 * 66.45873 * 10 9 8 13 13 N 1.47025 * 107.40555 * 140.47463 * 12 10 9 14 14 C 1.36937 * 125.65003 * 181.09700 * 13 12 10 15 15 H 1.07997 * 120.00004 * 162.02702 * 14 13 12 16 16 C 1.38808 * 120.00145 * 342.03398 * 14 13 12 17 17 N 1.31622 * 120.00079 * 156.33136 * 16 14 13 18 18 Si 1.86806 * 120.00152 * 336.33298 * 16 14 13 19 19 H 1.48507 * 109.46933 * 84.67395 * 18 16 14 20 20 H 1.48498 * 109.47130 * 204.67578 * 18 16 14 21 21 H 1.48499 * 109.46689 * 324.67567 * 18 16 14 22 22 C 1.47745 * 108.52686 * 1.18306 * 13 12 10 23 23 C 1.54912 * 104.83888 * 335.74810 * 22 13 12 24 24 H 1.08999 * 111.04088 * 279.00300 * 23 22 13 25 25 O 1.42901 * 111.00286 * 155.17000 * 23 22 13 26 26 C 1.38128 * 107.06409 * 359.63081 * 5 4 3 27 27 N 1.34427 * 108.38685 * 0.22889 * 26 5 4 28 28 H 0.96997 * 125.38540 * 179.97438 * 27 26 5 29 29 H 1.07999 * 126.49325 * 0.02562 * 4 3 2 30 30 H 0.97006 * 120.00066 * 0.02562 * 8 6 5 31 31 H 1.09009 * 109.46817 * 60.00455 * 9 8 6 32 32 H 1.08992 * 109.47253 * 300.00413 * 9 8 6 33 33 H 1.09006 * 109.88412 * 259.97183 * 12 10 9 34 34 H 1.09011 * 109.88589 * 20.98025 * 12 10 9 35 35 H 0.97001 * 119.99918 * 179.97438 * 17 16 14 36 36 H 1.08996 * 110.28824 * 216.94377 * 22 13 12 37 37 H 1.09003 * 110.52600 * 94.67322 * 22 13 12 38 38 H 0.96703 * 114.00374 * 67.79996 * 25 23 22 39 39 H 1.08005 * 125.80258 * 180.26102 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3662 0.5388 -0.9658 5 6 4.7049 0.3141 -0.5687 6 6 5.9163 0.7198 -1.3034 7 8 5.8164 1.3049 -2.3649 8 7 7.1349 0.4425 -0.7990 9 6 8.3392 0.8452 -1.5297 10 6 9.5799 0.4131 -0.7455 11 1 9.5636 0.8318 0.2607 12 6 9.6853 -1.1256 -0.6950 13 7 11.1046 -1.4747 -0.8546 14 6 11.6155 -2.7448 -0.8863 15 1 12.6020 -2.9201 -1.2893 16 6 10.8654 -3.8069 -0.4006 17 7 11.1043 -5.0298 -0.8248 18 14 9.5167 -3.5009 0.8552 19 1 8.2659 -3.1145 0.1540 20 1 9.2816 -4.7389 1.6409 21 1 9.9304 -2.4058 1.7689 22 6 11.8849 -0.2256 -0.9725 23 6 10.8742 0.8257 -1.4952 24 1 10.7446 0.7413 -2.5741 25 8 11.2769 2.1479 -1.1323 26 6 4.6626 -0.3520 0.6406 27 7 3.3746 -0.5378 0.9776 28 1 3.0627 -0.9813 1.7819 29 1 3.0382 1.0397 -1.8646 30 1 7.2147 -0.0245 0.0475 31 1 8.3450 1.9285 -1.6515 32 1 8.3455 0.3693 -2.5102 33 1 9.3193 -1.4911 0.2645 34 1 9.1025 -1.5640 -1.5053 35 1 10.5803 -5.7721 -0.4851 36 1 12.7000 -0.3549 -1.6844 37 1 12.2754 0.0743 0.0000 38 1 12.0815 2.4497 -1.5757 39 1 5.5188 -0.6691 1.2176 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957970550.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:00 Heat of formation + Delta-G solvation = 26.713770 kcal Electronic energy + Delta-G solvation = -24056.744081 eV Core-core repulsion = 20387.554121 eV Total energy + Delta-G solvation = -3669.189959 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.85972 -39.45244 -38.41214 -36.82626 -35.52972 -34.70847 -32.38136 -31.85835 -30.77515 -29.76305 -28.04331 -25.95689 -23.98831 -22.95818 -22.50787 -20.74636 -20.46433 -20.40091 -19.41800 -17.43876 -17.11102 -16.61810 -16.34661 -15.66882 -15.57863 -15.38351 -14.79787 -14.54026 -14.42856 -13.83516 -13.77697 -13.64098 -13.42568 -13.37431 -13.00460 -12.97069 -12.85657 -12.62822 -12.14470 -11.94980 -11.69619 -11.39050 -11.03794 -10.60522 -10.48260 -10.11850 -9.94851 -9.71270 -9.55812 -9.44450 -9.00741 -8.75108 -8.71893 -7.19443 -6.04764 -3.34779 0.96549 1.54244 1.86889 2.74059 3.00469 3.15564 3.19015 3.33129 3.38600 3.45516 3.66298 4.26897 4.43737 4.50656 4.57157 4.74564 4.86477 4.94398 5.05128 5.20671 5.32095 5.38734 5.53796 5.59760 5.62267 5.78910 5.96591 6.07558 6.09761 6.20372 6.25624 6.37040 6.48597 6.54304 6.62067 6.69686 7.03497 7.54868 7.56555 7.79935 8.20776 8.28898 8.71599 9.57498 10.04131 11.11534 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.014486 B = 0.003912 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.414904 B = 7155.644422 C = 8654.694194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C 0.281 3.719 3 C 0.041 3.959 4 C -0.046 4.046 5 C -0.221 4.221 6 C 0.589 3.411 7 O -0.542 6.542 8 N -0.724 5.724 9 C 0.135 3.865 10 C -0.106 4.106 11 H 0.090 0.910 12 C 0.125 3.875 13 N -0.606 5.606 14 C -0.245 4.245 15 H 0.094 0.906 16 C 0.022 3.978 17 N -0.904 5.904 18 Si 0.885 3.115 19 H -0.283 1.283 20 H -0.304 1.304 21 H -0.279 1.279 22 C 0.105 3.895 23 C 0.097 3.903 24 H 0.073 0.927 25 O -0.564 6.564 26 C 0.086 3.914 27 N -0.519 5.519 28 H 0.427 0.573 29 H 0.162 0.838 30 H 0.398 0.602 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.027 0.973 34 H 0.048 0.952 35 H 0.264 0.736 36 H 0.052 0.948 37 H 0.035 0.965 38 H 0.378 0.622 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.035 11.885 4.167 16.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.083 5.083 2 C -0.034 4.034 3 C -0.071 4.071 4 C -0.074 4.074 5 C -0.231 4.231 6 C 0.376 3.624 7 O -0.420 6.420 8 N -0.375 5.375 9 C 0.011 3.989 10 C -0.125 4.125 11 H 0.108 0.892 12 C 0.000 4.000 13 N -0.334 5.334 14 C -0.371 4.371 15 H 0.112 0.888 16 C -0.177 4.177 17 N -0.547 5.547 18 Si 0.716 3.284 19 H -0.211 1.211 20 H -0.232 1.232 21 H -0.206 1.206 22 C -0.021 4.021 23 C 0.036 3.964 24 H 0.091 0.909 25 O -0.368 6.368 26 C -0.057 4.057 27 N -0.113 5.113 28 H 0.266 0.734 29 H 0.179 0.821 30 H 0.232 0.768 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.225 0.775 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -12.466 11.927 3.889 17.685 hybrid contribution 0.187 -0.587 1.387 1.517 sum -12.279 11.341 5.275 17.528 Atomic orbital electron populations 1.81329 1.11240 1.09208 1.06520 1.24263 0.90770 0.93743 0.94655 1.15162 0.83315 1.13168 0.95414 1.21098 0.90260 0.98120 0.97929 1.19668 0.94084 1.11409 0.97967 1.17269 0.82080 0.78554 0.84508 1.90786 1.86846 1.42042 1.22316 1.45839 1.05625 1.60348 1.25678 1.21383 0.81839 1.00303 0.95352 1.22422 0.92940 0.96897 1.00242 0.89163 1.21752 0.88390 0.90748 0.99148 1.44679 1.00363 1.01738 1.86591 1.18650 1.03379 0.79773 1.35321 0.88838 1.24968 0.98366 0.94830 0.99538 1.69853 1.42511 0.99180 1.43145 0.86903 0.82436 0.75667 0.83369 1.21058 1.23177 1.20557 1.22307 0.94262 0.86770 0.98784 1.22945 0.93952 0.81792 0.97665 0.90941 1.86453 1.47873 1.31012 1.71495 1.22594 0.86363 0.99679 0.97022 1.41563 1.05641 1.44517 1.19535 0.73428 0.82074 0.76789 0.90716 0.90854 0.95578 0.93400 0.92608 0.92932 0.94712 0.77535 0.79521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.72 18.54 41.84 0.78 -3.94 16 2 C 0.28 2.66 15.88 -22.47 -0.36 2.30 16 3 C 0.04 0.33 6.90 -83.98 -0.58 -0.25 16 4 C -0.05 -0.44 10.59 -39.04 -0.41 -0.86 16 5 C -0.22 -2.29 6.13 -105.00 -0.64 -2.94 16 6 C 0.59 7.93 7.81 -12.54 -0.10 7.83 16 7 O -0.54 -9.21 16.92 5.26 0.09 -9.12 16 8 N -0.72 -9.10 5.39 -61.40 -0.33 -9.43 16 9 C 0.13 1.87 4.99 -4.04 -0.02 1.85 16 10 C -0.11 -1.61 2.75 -88.79 -0.24 -1.86 16 11 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 12 C 0.12 2.44 4.43 -3.07 -0.01 2.42 16 13 N -0.61 -13.70 3.22 -169.81 -0.55 -14.25 16 14 C -0.24 -6.62 10.58 -15.06 -0.16 -6.78 16 15 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 16 C 0.02 0.61 5.43 -17.43 -0.09 0.52 16 17 N -0.90 -26.88 13.97 55.49 0.78 -26.10 16 18 Si 0.88 20.86 24.39 -169.99 -4.15 16.71 16 19 H -0.28 -6.16 6.84 56.52 0.39 -5.78 16 20 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.28 -6.42 6.87 56.52 0.39 -6.03 16 22 C 0.10 1.90 6.99 -2.35 -0.02 1.88 16 23 C 0.10 1.43 3.88 -24.58 -0.10 1.34 16 24 H 0.07 1.03 8.05 -51.93 -0.42 0.61 16 25 O -0.56 -7.28 13.47 -35.23 -0.47 -7.75 16 26 C 0.09 0.60 11.43 -16.46 -0.19 0.41 16 27 N -0.52 -3.04 6.02 -10.29 -0.06 -3.10 16 28 H 0.43 1.18 8.96 -40.82 -0.37 0.81 16 29 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.40 4.22 7.24 -40.82 -0.30 3.92 16 31 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 32 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 33 H 0.03 0.54 3.52 -51.93 -0.18 0.36 16 34 H 0.05 0.99 7.76 -51.92 -0.40 0.59 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.38 3.20 9.12 45.56 0.42 3.61 16 39 H 0.19 0.81 7.44 -52.48 -0.39 0.42 16 LS Contribution 337.67 15.07 5.09 5.09 Total: -1.00 -35.59 337.67 -5.51 -41.10 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -3.76 Total: 4.92 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -2.92 Total: 5.88 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.61 Total: -56.83 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.39 Total: -16.87 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.15 Total: 16.71 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.59 -5.51 -41.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957970550.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.818 kcal (2) G-P(sol) polarization free energy of solvation -35.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds