Wall clock time and date at job start Fri Apr 10 2020 17:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.36363 * 125.84088 * 119.11386 * 3 2 1 5 5 C 1.41431 * 107.00907 * 180.15402 * 4 3 2 6 6 C 1.47378 * 126.46545 * 179.89261 * 5 4 3 7 7 O 1.21615 * 120.00044 * 359.71315 * 6 5 4 8 8 N 1.34775 * 119.99920 * 179.71032 * 6 5 4 9 9 C 1.46500 * 120.00052 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47093 * 180.02562 * 9 8 6 11 11 H 1.08997 * 110.64041 * 303.31206 * 10 9 8 12 12 C 1.54316 * 110.72011 * 66.45873 * 10 9 8 13 13 N 1.47025 * 107.40555 * 140.47463 * 12 10 9 14 14 C 1.36937 * 125.65003 * 181.09700 * 13 12 10 15 15 H 1.07997 * 120.00004 * 162.02702 * 14 13 12 16 16 C 1.38808 * 120.00145 * 342.03398 * 14 13 12 17 17 N 1.31622 * 120.00079 * 156.33136 * 16 14 13 18 18 Si 1.86806 * 120.00152 * 336.33298 * 16 14 13 19 19 H 1.48507 * 109.46933 * 84.67395 * 18 16 14 20 20 H 1.48498 * 109.47130 * 204.67578 * 18 16 14 21 21 H 1.48499 * 109.46689 * 324.67567 * 18 16 14 22 22 C 1.47745 * 108.52686 * 1.18306 * 13 12 10 23 23 C 1.54912 * 104.83888 * 335.74810 * 22 13 12 24 24 H 1.08999 * 111.04088 * 279.00300 * 23 22 13 25 25 O 1.42901 * 111.00286 * 155.17000 * 23 22 13 26 26 C 1.38128 * 107.06409 * 359.63081 * 5 4 3 27 27 N 1.34427 * 108.38685 * 0.22889 * 26 5 4 28 28 H 0.96997 * 125.38540 * 179.97438 * 27 26 5 29 29 H 1.07999 * 126.49325 * 0.02562 * 4 3 2 30 30 H 0.97006 * 120.00066 * 0.02562 * 8 6 5 31 31 H 1.09009 * 109.46817 * 60.00455 * 9 8 6 32 32 H 1.08992 * 109.47253 * 300.00413 * 9 8 6 33 33 H 1.09006 * 109.88412 * 259.97183 * 12 10 9 34 34 H 1.09011 * 109.88589 * 20.98025 * 12 10 9 35 35 H 0.97001 * 119.99918 * 179.97438 * 17 16 14 36 36 H 1.08996 * 110.28824 * 216.94377 * 22 13 12 37 37 H 1.09003 * 110.52600 * 94.67322 * 22 13 12 38 38 H 0.96703 * 114.00374 * 67.79996 * 25 23 22 39 39 H 1.08005 * 125.80258 * 180.26102 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3662 0.5388 -0.9658 5 6 4.7049 0.3141 -0.5687 6 6 5.9163 0.7198 -1.3034 7 8 5.8164 1.3049 -2.3649 8 7 7.1349 0.4425 -0.7990 9 6 8.3392 0.8452 -1.5297 10 6 9.5799 0.4131 -0.7455 11 1 9.5636 0.8318 0.2607 12 6 9.6853 -1.1256 -0.6950 13 7 11.1046 -1.4747 -0.8546 14 6 11.6155 -2.7448 -0.8863 15 1 12.6020 -2.9201 -1.2893 16 6 10.8654 -3.8069 -0.4006 17 7 11.1043 -5.0298 -0.8248 18 14 9.5167 -3.5009 0.8552 19 1 8.2659 -3.1145 0.1540 20 1 9.2816 -4.7389 1.6409 21 1 9.9304 -2.4058 1.7689 22 6 11.8849 -0.2256 -0.9725 23 6 10.8742 0.8257 -1.4952 24 1 10.7446 0.7413 -2.5741 25 8 11.2769 2.1479 -1.1323 26 6 4.6626 -0.3520 0.6406 27 7 3.3746 -0.5378 0.9776 28 1 3.0627 -0.9813 1.7819 29 1 3.0382 1.0397 -1.8646 30 1 7.2147 -0.0245 0.0475 31 1 8.3450 1.9285 -1.6515 32 1 8.3455 0.3693 -2.5102 33 1 9.3193 -1.4911 0.2645 34 1 9.1025 -1.5640 -1.5053 35 1 10.5803 -5.7721 -0.4851 36 1 12.7000 -0.3549 -1.6844 37 1 12.2754 0.0743 0.0000 38 1 12.0815 2.4497 -1.5757 39 1 5.5188 -0.6691 1.2176 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957970550.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:58 Heat of formation + Delta-G solvation = -3.362340 kcal Electronic energy + Delta-G solvation = -24058.048279 eV Core-core repulsion = 20387.554121 eV Total energy + Delta-G solvation = -3670.494157 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.51353 -40.58963 -39.63673 -37.62787 -36.75773 -35.98025 -34.13481 -32.72154 -31.93315 -30.71287 -29.49514 -27.39583 -25.41733 -23.73162 -23.49631 -22.22878 -21.68808 -21.05281 -20.41022 -19.01329 -18.57178 -17.48611 -17.32548 -16.94213 -16.56023 -16.36293 -15.96698 -15.67403 -15.41213 -15.25541 -15.17120 -14.77322 -14.49661 -14.27456 -14.16181 -14.01788 -13.73080 -13.64244 -13.52586 -13.35409 -13.28997 -12.77060 -12.65675 -12.15441 -11.92622 -11.77268 -11.30689 -11.01153 -10.90495 -10.65611 -10.29601 -9.99279 -9.42547 -9.07262 -8.14832 -5.42514 0.32702 0.75825 1.19506 1.31231 1.45295 1.56202 2.07508 2.22617 2.26275 2.46827 2.57797 2.92605 3.02490 3.20125 3.46024 3.62923 3.75705 3.83453 4.03736 4.09047 4.19902 4.34573 4.36133 4.51561 4.59035 4.67152 4.85545 4.89037 4.92817 4.98868 5.12871 5.25473 5.36274 5.47682 5.53225 5.67962 6.11873 6.20979 6.36605 6.63943 6.75033 6.94677 7.33063 7.54291 8.08857 9.04976 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.014486 B = 0.003912 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.414904 B = 7155.644422 C = 8654.694194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.304 3.696 3 C 0.041 3.959 4 C -0.055 4.055 5 C -0.255 4.255 6 C 0.588 3.412 7 O -0.587 6.587 8 N -0.718 5.718 9 C 0.143 3.857 10 C -0.091 4.091 11 H 0.106 0.894 12 C 0.121 3.879 13 N -0.626 5.626 14 C -0.242 4.242 15 H 0.056 0.944 16 C -0.045 4.045 17 N -0.957 5.957 18 Si 0.954 3.046 19 H -0.251 1.251 20 H -0.313 1.313 21 H -0.265 1.265 22 C 0.099 3.901 23 C 0.113 3.887 24 H 0.080 0.920 25 O -0.563 6.563 26 C 0.120 3.880 27 N -0.499 5.499 28 H 0.445 0.555 29 H 0.155 0.845 30 H 0.410 0.590 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.029 0.971 34 H 0.034 0.966 35 H 0.262 0.738 36 H 0.052 0.948 37 H 0.037 0.963 38 H 0.399 0.601 39 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.180 13.439 6.222 18.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.010 4.010 3 C -0.071 4.071 4 C -0.083 4.083 5 C -0.264 4.264 6 C 0.378 3.622 7 O -0.469 6.469 8 N -0.369 5.369 9 C 0.019 3.981 10 C -0.110 4.110 11 H 0.124 0.876 12 C -0.003 4.003 13 N -0.354 5.354 14 C -0.370 4.370 15 H 0.074 0.926 16 C -0.240 4.240 17 N -0.603 5.603 18 Si 0.782 3.218 19 H -0.176 1.176 20 H -0.242 1.242 21 H -0.190 1.190 22 C -0.026 4.026 23 C 0.053 3.947 24 H 0.098 0.902 25 O -0.370 6.370 26 C -0.025 4.025 27 N -0.094 5.094 28 H 0.288 0.712 29 H 0.173 0.827 30 H 0.246 0.754 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.249 0.751 39 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -13.619 13.529 5.976 20.105 hybrid contribution 0.716 -1.035 0.685 1.433 sum -12.903 12.494 6.661 19.156 Atomic orbital electron populations 1.81355 1.12413 1.10713 1.07922 1.24299 0.90779 0.92551 0.93420 1.14904 0.82604 1.13656 0.95900 1.21139 0.90617 0.98331 0.98234 1.19460 0.92857 1.14313 0.99805 1.17660 0.82905 0.77627 0.84029 1.90760 1.87466 1.44251 1.24411 1.45742 1.05010 1.60216 1.25974 1.21192 0.81827 1.00420 0.94629 1.22293 0.93666 0.93620 1.01393 0.87622 1.21841 0.86278 0.93810 0.98407 1.44738 1.02526 1.01487 1.86600 1.18562 1.02058 0.82177 1.34238 0.92612 1.25771 1.02183 0.94427 1.01589 1.70013 1.45010 1.00377 1.44938 0.85807 0.80406 0.75385 0.80211 1.17563 1.24221 1.19050 1.22507 0.94986 0.86008 0.99069 1.22650 0.92491 0.81763 0.97818 0.90192 1.86419 1.49331 1.29312 1.71949 1.23029 0.87381 0.96674 0.95409 1.41557 1.05007 1.43375 1.19484 0.71205 0.82740 0.75356 0.90135 0.92274 0.95415 0.94804 0.92895 0.93001 0.94477 0.75063 0.75959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.99 18.54 19.00 0.35 -9.63 16 2 C 0.30 5.30 15.88 88.33 1.40 6.70 16 3 C 0.04 0.57 6.90 39.03 0.27 0.84 16 4 C -0.05 -0.98 10.59 22.62 0.24 -0.74 16 5 C -0.25 -4.62 6.13 -20.11 -0.12 -4.74 16 6 C 0.59 14.72 7.81 86.65 0.68 15.40 16 7 O -0.59 -19.66 16.92 -4.08 -0.07 -19.73 16 8 N -0.72 -15.87 5.39 -466.41 -2.51 -18.38 16 9 C 0.14 3.61 4.99 86.38 0.43 4.04 16 10 C -0.09 -2.47 2.75 -9.61 -0.03 -2.49 16 11 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 12 C 0.12 4.43 4.43 86.73 0.38 4.82 16 13 N -0.63 -27.75 3.22 -691.16 -2.23 -29.98 16 14 C -0.24 -13.35 10.58 84.03 0.89 -12.46 16 15 H 0.06 3.38 8.06 -2.91 -0.02 3.35 16 16 C -0.05 -2.55 5.43 84.86 0.46 -2.09 16 17 N -0.96 -58.61 13.97 21.65 0.30 -58.31 16 18 Si 0.95 42.09 24.39 68.60 1.67 43.76 16 19 H -0.25 -9.62 6.84 99.48 0.68 -8.94 16 20 H -0.31 -14.24 7.11 99.48 0.71 -13.53 16 21 H -0.26 -10.98 6.87 99.48 0.68 -10.30 16 22 C 0.10 3.45 6.99 86.79 0.61 4.05 16 23 C 0.11 3.05 3.88 31.99 0.12 3.17 16 24 H 0.08 2.07 8.05 -2.39 -0.02 2.05 16 25 O -0.56 -12.46 13.47 -148.98 -2.01 -14.47 16 26 C 0.12 1.14 11.43 84.27 0.96 2.10 16 27 N -0.50 -3.83 6.02 -186.46 -1.12 -4.95 16 28 H 0.45 0.42 8.96 -92.71 -0.83 -0.41 16 29 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 30 H 0.41 6.87 7.24 -92.70 -0.67 6.20 16 31 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.06 1.68 8.06 -2.39 -0.02 1.66 16 33 H 0.03 1.04 3.52 -2.38 -0.01 1.03 16 34 H 0.03 1.34 7.76 -2.38 -0.02 1.32 16 35 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.40 5.30 9.12 -74.06 -0.68 4.63 16 39 H 0.22 0.50 7.44 -2.91 -0.02 0.48 16 Total: -1.00 -80.30 337.67 -0.40 -80.70 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -1.09 Total: 12.38 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 6.30 Total: 18.60 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -5.21 Total: -121.25 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -2.08 Total: -34.20 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 1.67 Total: 43.76 kcal Total: -80.30 -0.40 -80.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957970550.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.339 kcal (2) G-P(sol) polarization free energy of solvation -80.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds