Wall clock time and date at job start Fri Apr 10 2020 17:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 120.00163 * 2 1 4 4 H 1.48495 * 109.46937 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46739 * 119.99975 * 3 2 1 6 6 H 1.48496 * 109.47047 * 239.99799 * 3 2 1 7 7 C 1.38815 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99653 * 160.39388 * 7 2 1 9 9 N 1.36935 * 120.00194 * 340.39495 * 7 2 1 10 10 C 1.46960 * 120.59695 * 136.35881 * 9 7 2 11 11 C 1.53804 * 108.40409 * 124.75358 * 10 9 7 12 12 N 1.46965 * 108.57876 * 49.63582 * 11 10 9 13 13 C 1.34780 * 120.59220 * 124.66857 * 12 11 10 14 14 O 1.21512 * 120.00190 * 4.33400 * 13 12 11 15 15 C 1.48171 * 119.99884 * 184.33112 * 13 12 11 16 16 C 1.39245 * 119.65506 * 155.75065 * 15 13 12 17 17 C 1.39759 * 118.90092 * 180.02562 * 16 15 13 18 18 C 1.48142 * 120.88580 * 179.97438 * 17 16 15 19 19 N 1.34779 * 120.00078 * 179.97438 * 18 17 16 20 20 O 1.21512 * 120.00374 * 359.97438 * 18 17 16 21 21 C 1.39797 * 118.22193 * 359.97438 * 17 16 15 22 22 C 1.38506 * 119.19327 * 0.02562 * 21 17 16 23 23 N 1.31466 * 121.03011 * 359.71768 * 22 21 17 24 24 C 1.46966 * 118.81247 * 304.65027 * 12 11 10 25 25 C 1.46965 * 120.59265 * 316.63066 * 9 7 2 26 26 H 0.96993 * 119.99793 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.60827 * 244.53884 * 10 9 7 28 28 H 1.09003 * 109.60809 * 5.04257 * 10 9 7 29 29 H 1.09002 * 109.74373 * 289.84682 * 11 10 9 30 30 H 1.09000 * 109.53410 * 169.30384 * 11 10 9 31 31 H 1.07997 * 120.55047 * 0.02562 * 16 15 13 32 32 H 0.97003 * 119.99451 * 359.97438 * 19 18 17 33 33 H 0.96992 * 120.00473 * 180.02562 * 19 18 17 34 34 H 1.08008 * 120.40791 * 179.97438 * 21 17 16 35 35 H 1.07999 * 119.48534 * 180.02562 * 22 21 17 36 36 H 1.08997 * 109.60826 * 295.47870 * 24 12 11 37 37 H 1.09001 * 109.74824 * 175.05343 * 24 12 11 38 38 H 1.09000 * 109.61158 * 354.95122 * 25 9 7 39 39 H 1.08996 * 109.61028 * 115.46300 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6963 -1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0433 -1.2295 -0.3133 9 7 1.3851 -2.3535 0.3990 10 6 1.5597 -3.6004 -0.3591 11 6 2.0657 -4.6875 0.6040 12 7 1.2034 -4.6970 1.7940 13 6 0.5880 -5.8302 2.1862 14 8 0.8054 -6.8731 1.6017 15 6 -0.3535 -5.8043 3.3300 16 6 -1.3435 -6.7784 3.4296 17 6 -2.2234 -6.7386 4.5147 18 6 -3.2932 -7.7525 4.6638 19 7 -4.1317 -7.6975 5.7176 20 8 -3.4148 -8.6337 3.8361 21 6 -2.0670 -5.7165 5.4556 22 6 -1.0552 -4.7869 5.2813 23 7 -0.2412 -4.8562 4.2512 24 6 1.0243 -3.4489 2.5490 25 6 0.5227 -2.3631 1.5890 26 1 -0.4849 0.8400 -0.0004 27 1 0.6050 -3.9040 -0.7887 28 1 2.2889 -3.4458 -1.1545 29 1 3.0925 -4.4699 0.8981 30 1 2.0215 -5.6593 0.1124 31 1 -1.4300 -7.5517 2.6808 32 1 -4.0343 -6.9942 6.3786 33 1 -4.8318 -8.3615 5.8155 34 1 -2.7276 -5.6520 6.3076 35 1 -0.9299 -3.9955 6.0055 36 1 1.9769 -3.1431 2.9816 37 1 0.2937 -3.6006 3.3436 38 1 0.5669 -1.3913 2.0806 39 1 -0.5040 -2.5807 1.2949 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957974032.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:13 Heat of formation + Delta-G solvation = 13.887033 kcal Electronic energy + Delta-G solvation = -24663.742396 eV Core-core repulsion = 20993.996227 eV Total energy + Delta-G solvation = -3669.746169 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.13615 -39.69525 -38.65599 -36.76390 -34.46312 -33.86654 -32.73608 -31.81190 -31.02961 -30.13079 -27.07057 -25.50001 -24.56859 -23.35563 -22.66446 -21.90475 -20.52978 -19.29468 -18.29867 -17.59530 -17.21772 -16.25125 -16.13966 -15.93887 -15.46487 -15.18236 -14.94365 -14.73330 -14.62403 -14.21635 -13.81090 -13.57749 -13.45880 -13.29981 -13.15425 -12.31706 -12.26441 -11.65280 -11.44362 -10.84219 -10.78946 -10.65361 -10.50328 -10.34861 -10.29589 -10.22533 -10.17128 -9.97675 -9.83113 -9.47505 -8.87418 -8.51516 -8.21638 -6.49723 -5.83398 -3.44513 0.21813 0.63048 2.37108 2.86586 2.96972 3.28396 3.34249 3.40007 3.42142 3.66655 4.05077 4.21138 4.40541 4.45044 4.55688 4.69969 4.93421 5.29547 5.36637 5.45438 5.47047 5.62704 5.91051 5.94898 6.07513 6.11939 6.22274 6.30272 6.34691 6.50766 6.69619 6.80548 6.86341 6.98982 7.18474 7.29583 7.44523 7.76029 7.79345 7.87656 8.42041 8.49492 9.14302 9.72756 10.42104 11.18930 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.022451 B = 0.003565 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.877027 B = 7852.822418 C = 8503.964309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.022 3.978 3 Si 0.899 3.101 4 H -0.290 1.290 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.273 4.273 8 H 0.059 0.941 9 N -0.587 5.587 10 C 0.132 3.868 11 C 0.092 3.908 12 N -0.569 5.569 13 C 0.560 3.440 14 O -0.548 6.548 15 C 0.095 3.905 16 C -0.058 4.058 17 C -0.100 4.100 18 C 0.567 3.433 19 N -0.847 5.847 20 O -0.525 6.525 21 C -0.126 4.126 22 C 0.092 3.908 23 N -0.424 5.424 24 C 0.047 3.953 25 C 0.161 3.839 26 H 0.256 0.744 27 H 0.023 0.977 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.159 0.841 32 H 0.402 0.598 33 H 0.408 0.592 34 H 0.143 0.857 35 H 0.172 0.828 36 H 0.062 0.938 37 H 0.133 0.867 38 H 0.073 0.927 39 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.510 -10.146 15.666 19.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.180 4.180 3 Si 0.727 3.273 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.403 4.403 8 H 0.076 0.924 9 N -0.310 5.310 10 C 0.005 3.995 11 C -0.031 4.031 12 N -0.298 5.298 13 C 0.345 3.655 14 O -0.426 6.426 15 C -0.043 4.043 16 C -0.080 4.080 17 C -0.111 4.111 18 C 0.351 3.649 19 N -0.412 5.412 20 O -0.401 6.401 21 C -0.147 4.147 22 C -0.066 4.066 23 N -0.137 5.137 24 C -0.077 4.077 25 C 0.035 3.965 26 H 0.065 0.935 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.177 0.823 32 H 0.232 0.768 33 H 0.240 0.760 34 H 0.161 0.839 35 H 0.189 0.811 36 H 0.081 0.919 37 H 0.149 0.851 38 H 0.091 0.909 39 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -5.779 -10.421 14.571 18.823 hybrid contribution -0.607 0.670 0.552 1.060 sum -6.386 -9.750 15.124 19.094 Atomic orbital electron populations 1.70083 1.05664 1.25998 1.50956 1.25426 0.95048 0.99022 0.98522 0.86467 0.79215 0.83166 0.78427 1.21619 1.20655 1.20576 1.18944 0.93110 0.84990 1.43207 0.92380 1.43857 1.55891 1.05420 1.25825 1.21430 0.98297 0.86937 0.92806 1.22437 0.93247 1.01076 0.86377 1.47922 1.44803 1.09354 1.27708 1.17794 0.80633 0.84223 0.82814 1.90761 1.64628 1.30653 1.56585 1.21357 0.95965 0.91804 0.95139 1.22187 0.91309 0.97654 0.96834 1.20224 0.97385 0.96786 0.96710 1.18101 0.81240 0.84184 0.81369 1.43679 1.35687 1.34750 1.27076 1.90867 1.71720 1.35795 1.41670 1.22467 0.98962 0.94453 0.98793 1.23023 0.90831 0.97969 0.94781 1.67626 1.25457 1.19167 1.01419 1.23737 1.03531 0.83724 0.96695 1.21080 0.92633 0.95896 0.86928 0.93469 0.95936 0.91334 0.91544 0.89970 0.82294 0.76831 0.76010 0.83933 0.81053 0.91928 0.85135 0.90880 0.96065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 12.54 55.49 0.70 -24.75 16 2 C 0.02 0.60 4.81 -17.43 -0.08 0.51 16 3 Si 0.90 21.06 29.60 -169.99 -5.03 16.02 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.27 -7.38 9.35 -15.06 -0.14 -7.52 16 8 H 0.06 1.56 7.90 -52.49 -0.41 1.14 16 9 N -0.59 -14.66 2.84 -171.77 -0.49 -15.15 16 10 C 0.13 2.89 6.70 -3.37 -0.02 2.87 16 11 C 0.09 1.77 6.60 -3.37 -0.02 1.75 16 12 N -0.57 -10.93 2.95 -173.21 -0.51 -11.44 16 13 C 0.56 10.48 7.59 -12.18 -0.09 10.39 16 14 O -0.55 -11.35 15.99 5.36 0.09 -11.26 16 15 C 0.10 1.47 6.47 -83.05 -0.54 0.93 16 16 C -0.06 -0.82 9.19 -38.64 -0.36 -1.17 16 17 C -0.10 -1.06 5.91 -104.68 -0.62 -1.68 16 18 C 0.57 5.90 8.07 -12.19 -0.10 5.80 16 19 N -0.85 -4.49 8.83 30.60 0.27 -4.22 16 20 O -0.53 -7.78 17.28 5.36 0.09 -7.69 16 21 C -0.13 -0.93 9.62 -38.90 -0.37 -1.31 16 22 C 0.09 0.83 11.17 -17.61 -0.20 0.64 16 23 N -0.42 -5.69 6.33 -9.85 -0.06 -5.75 16 24 C 0.05 0.88 6.26 -3.60 -0.02 0.86 16 25 C 0.16 3.72 5.60 -3.60 -0.02 3.70 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 1.44 7.93 -51.93 -0.41 1.03 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.08 1.52 7.01 -51.93 -0.36 1.16 16 31 H 0.16 2.41 7.52 -52.49 -0.39 2.02 16 32 H 0.40 0.83 6.97 -40.82 -0.28 0.55 16 33 H 0.41 1.65 8.93 -40.82 -0.36 1.29 16 34 H 0.14 0.39 6.53 -52.48 -0.34 0.05 16 35 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.13 2.21 3.80 -84.94 -0.32 1.89 16 38 H 0.07 1.80 7.21 -51.93 -0.37 1.42 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 327.74 15.07 4.94 4.94 Total: -1.00 -35.46 327.74 -7.12 -42.58 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -4.52 Total: 0.95 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: -2.58 Total: 15.76 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -0.09 Total: -61.30 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: 0.18 Total: -18.95 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.46 -7.12 -42.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957974032.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.464 kcal (2) G-P(sol) polarization free energy of solvation -35.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds