Wall clock time and date at job start Fri Apr 10 2020 17:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 120.00163 * 2 1 4 4 H 1.48495 * 109.46937 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46739 * 119.99975 * 3 2 1 6 6 H 1.48496 * 109.47047 * 239.99799 * 3 2 1 7 7 C 1.38815 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99653 * 160.39388 * 7 2 1 9 9 N 1.36935 * 120.00194 * 340.39495 * 7 2 1 10 10 C 1.46960 * 120.59695 * 136.35881 * 9 7 2 11 11 C 1.53804 * 108.40409 * 124.75358 * 10 9 7 12 12 N 1.46965 * 108.57876 * 49.63582 * 11 10 9 13 13 C 1.34780 * 120.59220 * 124.66857 * 12 11 10 14 14 O 1.21512 * 120.00190 * 4.33400 * 13 12 11 15 15 C 1.48171 * 119.99884 * 184.33112 * 13 12 11 16 16 C 1.39245 * 119.65506 * 155.75065 * 15 13 12 17 17 C 1.39759 * 118.90092 * 180.02562 * 16 15 13 18 18 C 1.48142 * 120.88580 * 179.97438 * 17 16 15 19 19 N 1.34779 * 120.00078 * 179.97438 * 18 17 16 20 20 O 1.21512 * 120.00374 * 359.97438 * 18 17 16 21 21 C 1.39797 * 118.22193 * 359.97438 * 17 16 15 22 22 C 1.38506 * 119.19327 * 0.02562 * 21 17 16 23 23 N 1.31466 * 121.03011 * 359.71768 * 22 21 17 24 24 C 1.46966 * 118.81247 * 304.65027 * 12 11 10 25 25 C 1.46965 * 120.59265 * 316.63066 * 9 7 2 26 26 H 0.96993 * 119.99793 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.60827 * 244.53884 * 10 9 7 28 28 H 1.09003 * 109.60809 * 5.04257 * 10 9 7 29 29 H 1.09002 * 109.74373 * 289.84682 * 11 10 9 30 30 H 1.09000 * 109.53410 * 169.30384 * 11 10 9 31 31 H 1.07997 * 120.55047 * 0.02562 * 16 15 13 32 32 H 0.97003 * 119.99451 * 359.97438 * 19 18 17 33 33 H 0.96992 * 120.00473 * 180.02562 * 19 18 17 34 34 H 1.08008 * 120.40791 * 179.97438 * 21 17 16 35 35 H 1.07999 * 119.48534 * 180.02562 * 22 21 17 36 36 H 1.08997 * 109.60826 * 295.47870 * 24 12 11 37 37 H 1.09001 * 109.74824 * 175.05343 * 24 12 11 38 38 H 1.09000 * 109.61158 * 354.95122 * 25 9 7 39 39 H 1.08996 * 109.61028 * 115.46300 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6963 -1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0433 -1.2295 -0.3133 9 7 1.3851 -2.3535 0.3990 10 6 1.5597 -3.6004 -0.3591 11 6 2.0657 -4.6875 0.6040 12 7 1.2034 -4.6970 1.7940 13 6 0.5880 -5.8302 2.1862 14 8 0.8054 -6.8731 1.6017 15 6 -0.3535 -5.8043 3.3300 16 6 -1.3435 -6.7784 3.4296 17 6 -2.2234 -6.7386 4.5147 18 6 -3.2932 -7.7525 4.6638 19 7 -4.1317 -7.6975 5.7176 20 8 -3.4148 -8.6337 3.8361 21 6 -2.0670 -5.7165 5.4556 22 6 -1.0552 -4.7869 5.2813 23 7 -0.2412 -4.8562 4.2512 24 6 1.0243 -3.4489 2.5490 25 6 0.5227 -2.3631 1.5890 26 1 -0.4849 0.8400 -0.0004 27 1 0.6050 -3.9040 -0.7887 28 1 2.2889 -3.4458 -1.1545 29 1 3.0925 -4.4699 0.8981 30 1 2.0215 -5.6593 0.1124 31 1 -1.4300 -7.5517 2.6808 32 1 -4.0343 -6.9942 6.3786 33 1 -4.8318 -8.3615 5.8155 34 1 -2.7276 -5.6520 6.3076 35 1 -0.9299 -3.9955 6.0055 36 1 1.9769 -3.1431 2.9816 37 1 0.2937 -3.6006 3.3436 38 1 0.5669 -1.3913 2.0806 39 1 -0.5040 -2.5807 1.2949 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957974032.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:12 Heat of formation + Delta-G solvation = -14.026021 kcal Electronic energy + Delta-G solvation = -24664.952796 eV Core-core repulsion = 20993.996227 eV Total energy + Delta-G solvation = -3670.956569 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -42.15545 -40.83293 -39.75990 -38.45664 -35.69254 -35.17048 -33.75738 -33.15648 -32.53417 -31.75087 -28.81282 -26.57167 -25.85088 -24.94389 -24.21585 -23.02801 -21.87708 -20.63524 -19.44524 -18.62853 -18.40861 -17.73193 -17.25065 -17.05586 -16.70514 -16.61019 -16.26232 -15.98739 -15.73332 -15.56241 -15.26140 -15.14845 -14.84380 -14.74798 -14.68781 -13.94568 -13.36954 -13.26336 -13.06393 -12.62879 -12.56989 -12.28282 -12.20721 -12.07397 -11.70592 -11.55846 -11.41786 -11.15339 -10.79183 -10.58690 -10.40771 -10.09860 -9.82773 -8.51838 -7.87571 -5.55656 -0.66116 -0.29726 1.38593 1.48779 1.50250 1.58077 1.77301 1.90825 2.28856 2.49481 2.68386 2.94279 3.21576 3.49540 3.59788 3.66755 3.75213 3.81158 4.05701 4.24302 4.27520 4.44935 4.54368 4.59197 4.65042 4.68920 4.80094 4.81971 4.97666 5.06661 5.16082 5.39536 5.45657 5.65395 5.66986 5.76882 6.28612 6.33973 6.43181 6.55476 6.97551 7.11493 7.16059 7.72155 8.38812 9.11069 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.022451 B = 0.003565 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.877027 B = 7852.822418 C = 8503.964309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.026 4.026 3 Si 0.968 3.032 4 H -0.292 1.292 5 H -0.271 1.271 6 H -0.275 1.275 7 C -0.286 4.286 8 H 0.059 0.941 9 N -0.605 5.605 10 C 0.133 3.867 11 C 0.102 3.898 12 N -0.578 5.578 13 C 0.557 3.443 14 O -0.578 6.578 15 C 0.066 3.934 16 C -0.075 4.075 17 C -0.105 4.105 18 C 0.565 3.435 19 N -0.815 5.815 20 O -0.581 6.581 21 C -0.085 4.085 22 C 0.098 3.902 23 N -0.447 5.447 24 C 0.064 3.936 25 C 0.171 3.829 26 H 0.254 0.746 27 H 0.003 0.997 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.132 0.868 32 H 0.422 0.578 33 H 0.419 0.581 34 H 0.205 0.795 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.159 0.841 38 H 0.054 0.946 39 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.191 -9.349 19.323 22.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.225 4.225 3 Si 0.794 3.206 4 H -0.218 1.218 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.416 4.416 8 H 0.076 0.924 9 N -0.328 5.328 10 C 0.007 3.993 11 C -0.022 4.022 12 N -0.308 5.308 13 C 0.344 3.656 14 O -0.459 6.459 15 C -0.069 4.069 16 C -0.097 4.097 17 C -0.116 4.116 18 C 0.350 3.650 19 N -0.381 5.381 20 O -0.461 6.461 21 C -0.105 4.105 22 C -0.061 4.061 23 N -0.160 5.160 24 C -0.059 4.059 25 C 0.044 3.956 26 H 0.063 0.937 27 H 0.021 0.979 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.150 0.850 32 H 0.256 0.744 33 H 0.252 0.748 34 H 0.222 0.778 35 H 0.235 0.765 36 H 0.083 0.917 37 H 0.174 0.826 38 H 0.072 0.928 39 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges -6.465 -9.630 18.275 21.645 hybrid contribution -0.522 0.374 -0.453 0.785 sum -6.986 -9.256 17.822 21.263 Atomic orbital electron populations 1.70218 1.07203 1.26597 1.52399 1.26196 0.95765 1.02223 0.98334 0.85381 0.77812 0.78700 0.78689 1.21777 1.19663 1.20087 1.19253 0.93330 0.86031 1.43003 0.92396 1.44142 1.55965 1.05819 1.26918 1.21455 0.97555 0.86788 0.93521 1.22232 0.93666 1.00026 0.86233 1.47988 1.45261 1.09753 1.27759 1.18351 0.80373 0.83376 0.83471 1.90720 1.65567 1.31563 1.58018 1.20721 0.96671 0.94061 0.95436 1.22003 0.92589 0.97068 0.98020 1.20344 0.96834 0.97978 0.96431 1.18134 0.81612 0.83439 0.81846 1.43436 1.34122 1.35013 1.25488 1.90854 1.73240 1.37949 1.44012 1.23087 0.97853 0.91095 0.98469 1.23881 0.89565 0.98860 0.93770 1.67282 1.27172 1.19045 1.02505 1.23627 1.04287 0.82077 0.95896 1.20932 0.91126 0.96416 0.87094 0.93716 0.97915 0.90845 0.90552 0.89536 0.85035 0.74424 0.74824 0.77817 0.76462 0.91679 0.82574 0.92799 0.98901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.05 12.54 21.65 0.27 -53.78 16 2 C -0.03 -1.46 4.81 84.86 0.41 -1.05 16 3 Si 0.97 43.47 29.60 68.60 2.03 45.50 16 4 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.29 -15.73 9.35 84.03 0.79 -14.94 16 8 H 0.06 3.13 7.90 -2.91 -0.02 3.11 16 9 N -0.60 -31.07 2.84 -697.37 -1.98 -33.05 16 10 C 0.13 6.04 6.70 86.56 0.58 6.62 16 11 C 0.10 4.03 6.60 86.56 0.57 4.60 16 12 N -0.58 -22.77 2.95 -820.20 -2.42 -25.18 16 13 C 0.56 21.59 7.59 86.88 0.66 22.25 16 14 O -0.58 -25.21 15.99 -3.75 -0.06 -25.27 16 15 C 0.07 2.06 6.47 41.90 0.27 2.33 16 16 C -0.07 -2.13 9.19 22.88 0.21 -1.92 16 17 C -0.10 -1.99 5.91 -19.90 -0.12 -2.11 16 18 C 0.57 10.66 8.07 86.87 0.70 11.37 16 19 N -0.81 -5.36 8.83 -175.40 -1.55 -6.90 16 20 O -0.58 -17.36 17.28 -3.75 -0.06 -17.43 16 21 C -0.09 -0.80 9.62 22.71 0.22 -0.58 16 22 C 0.10 1.32 11.17 84.81 0.95 2.26 16 23 N -0.45 -11.10 6.33 -185.07 -1.17 -12.27 16 24 C 0.06 2.44 6.26 86.41 0.54 2.98 16 25 C 0.17 8.10 5.60 86.41 0.48 8.59 16 26 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 27 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.07 3.18 7.93 -2.39 -0.02 3.16 16 29 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.09 3.32 7.01 -2.39 -0.02 3.31 16 31 H 0.13 4.39 7.52 -2.91 -0.02 4.36 16 32 H 0.42 -0.78 6.97 -92.71 -0.65 -1.42 16 33 H 0.42 1.90 8.93 -92.71 -0.83 1.08 16 34 H 0.20 -0.60 6.53 -2.91 -0.02 -0.62 16 35 H 0.22 0.92 8.06 -2.91 -0.02 0.90 16 36 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.16 5.16 3.80 -67.57 -0.26 4.91 16 38 H 0.05 2.72 7.21 -2.39 -0.02 2.70 16 39 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 Total: -1.00 -83.47 327.74 0.72 -82.75 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -0.60 Total: 5.24 kcal Atomic # 6 Polarization: 34.14 SS G_CDS: 6.26 Total: 40.40 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -6.85 Total: -131.19 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -0.12 Total: -42.70 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -83.47 0.72 -82.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957974032.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.721 kcal (2) G-P(sol) polarization free energy of solvation -83.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds