Wall clock time and date at job start Fri Apr 10 2020 17:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.38074 * 125.89528 * 284.59842 * 3 2 1 5 5 C 1.39359 * 107.51667 * 179.72223 * 4 3 2 6 6 C 1.38001 * 107.48170 * 0.41916 * 5 4 3 7 7 C 1.47053 * 125.91725 * 179.84526 * 6 5 4 8 8 O 1.21652 * 120.00075 * 359.68794 * 7 6 5 9 9 N 1.34781 * 120.00172 * 179.69441 * 7 6 5 10 10 C 1.46495 * 120.00183 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47321 * 179.97438 * 10 9 7 12 12 H 1.08996 * 110.64128 * 303.31902 * 11 10 9 13 13 C 1.54325 * 110.71718 * 66.45279 * 11 10 9 14 14 N 1.47018 * 107.27099 * 140.73458 * 13 11 10 15 15 C 1.36941 * 125.65333 * 181.01921 * 14 13 11 16 16 H 1.08003 * 119.99654 * 10.75826 * 15 14 13 17 17 C 1.38811 * 120.00604 * 190.74952 * 15 14 13 18 18 N 1.31621 * 119.99472 * 9.07328 * 17 15 14 19 19 Si 1.86802 * 120.00075 * 189.06828 * 17 15 14 20 20 H 1.48497 * 109.46995 * 84.99393 * 19 17 15 21 21 H 1.48497 * 109.47222 * 324.99067 * 19 17 15 22 22 H 1.48502 * 109.46692 * 204.99429 * 19 17 15 23 23 C 1.47428 * 108.70261 * 1.29115 * 14 13 11 24 24 C 1.55124 * 104.71992 * 335.55012 * 23 14 13 25 25 H 1.09006 * 111.19065 * 279.19363 * 24 23 14 26 26 O 1.42905 * 110.93980 * 155.29276 * 24 23 14 27 27 N 1.36715 * 125.89418 * 104.57830 * 3 2 1 28 28 H 0.97006 * 125.68902 * 0.04149 * 27 3 2 29 29 H 1.08006 * 126.24224 * 0.02562 * 4 3 2 30 30 H 1.08002 * 126.25789 * 180.30422 * 5 4 3 31 31 H 0.96999 * 119.99502 * 359.97438 * 9 7 6 32 32 H 1.09003 * 109.47316 * 59.99576 * 10 9 7 33 33 H 1.09004 * 109.47201 * 299.99957 * 10 9 7 34 34 H 1.09003 * 109.88667 * 21.31809 * 13 11 10 35 35 H 1.09003 * 110.01476 * 260.22446 * 13 11 10 36 36 H 0.96997 * 119.99379 * 180.02562 * 18 17 15 37 37 H 1.08991 * 110.36854 * 94.48382 * 23 14 13 38 38 H 1.08999 * 110.36513 * 216.80406 * 23 14 13 39 39 H 0.96703 * 114.00004 * 67.95673 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3777 -0.2809 1.0824 5 6 4.7001 -0.1758 0.6556 6 6 4.6784 0.1776 -0.6782 7 6 5.8556 0.3997 -1.5311 8 8 6.9739 0.2793 -1.0676 9 7 5.6956 0.7368 -2.8262 10 6 6.8683 0.9586 -3.6756 11 6 6.4122 1.3257 -5.0892 12 1 5.7635 0.5506 -5.4970 13 6 5.6979 2.6937 -5.0943 14 7 6.1169 3.4004 -6.3135 15 6 5.7217 4.6585 -6.6826 16 1 5.1893 5.2846 -5.9819 17 6 6.0056 5.1293 -7.9572 18 7 6.4921 4.3122 -8.8673 19 14 5.6971 6.9223 -8.3809 20 1 6.8705 7.7361 -7.9733 21 1 4.4892 7.4002 -7.6615 22 1 5.4865 7.0558 -9.8448 23 6 7.0278 2.5275 -7.0763 24 6 7.6310 1.5667 -6.0184 25 1 8.4484 2.0414 -5.4755 26 8 8.0626 0.3464 -6.6239 27 7 3.3694 0.2798 -1.0719 28 1 3.0628 0.5118 -1.9625 29 1 3.0465 -0.5405 2.0771 30 1 5.5809 -0.3391 1.2589 31 1 4.8039 0.8325 -3.1958 32 1 7.4677 0.0489 -3.7124 33 1 7.4667 1.7715 -3.2640 34 1 5.9895 3.2676 -4.2146 35 1 4.6174 2.5504 -5.1017 36 1 6.6908 4.6413 -9.7578 37 1 6.4741 1.9670 -7.8294 38 1 7.8153 3.1180 -7.5447 39 1 8.8224 0.4471 -7.2136 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957982827.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:18 Heat of formation + Delta-G solvation = -8.443377 kcal Electronic energy + Delta-G solvation = -23768.578391 eV Core-core repulsion = 20097.863903 eV Total energy + Delta-G solvation = -3670.714488 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.47632 -40.55801 -39.60682 -37.62069 -36.66320 -36.18343 -34.10516 -32.39829 -31.73094 -30.68735 -29.25227 -27.37658 -25.71704 -24.27398 -22.53092 -22.01854 -21.47360 -21.36850 -20.53214 -18.96934 -18.55965 -18.20499 -17.09247 -16.79830 -16.65325 -15.96414 -15.88415 -15.60228 -15.45975 -15.13067 -14.73663 -14.56312 -14.45179 -14.28604 -14.11899 -13.90139 -13.70722 -13.65293 -13.29295 -13.28451 -13.06993 -12.79352 -12.40579 -12.33548 -11.93415 -11.87607 -11.56789 -11.24535 -10.82546 -10.70426 -10.26321 -10.15819 -9.38307 -8.90951 -7.91663 -5.27947 -0.10100 1.12727 1.13655 1.46122 1.47589 1.55395 1.92292 2.05291 2.27183 2.36597 2.46166 2.90564 3.17565 3.28273 3.58787 3.65450 3.79614 3.89461 4.10215 4.14179 4.26095 4.41883 4.45582 4.58910 4.75262 4.85564 4.88947 4.95433 5.13760 5.20144 5.29678 5.37879 5.45700 5.47635 5.65689 5.72072 6.04720 6.14953 6.29658 6.42159 6.88141 7.03025 7.03874 7.70897 8.35611 9.19439 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.014907 B = 0.003174 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.906888 B = 8820.838915 C =10067.703040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.300 3.700 3 C 0.088 3.912 4 C -0.111 4.111 5 C -0.115 4.115 6 C -0.010 4.010 7 C 0.587 3.413 8 O -0.558 6.558 9 N -0.715 5.715 10 C 0.147 3.853 11 C -0.088 4.088 12 H 0.092 0.908 13 C 0.138 3.862 14 N -0.622 5.622 15 C -0.246 4.246 16 H 0.083 0.917 17 C -0.061 4.061 18 N -0.947 5.947 19 Si 0.976 3.024 20 H -0.284 1.284 21 H -0.269 1.269 22 H -0.296 1.296 23 C 0.156 3.844 24 C 0.097 3.903 25 H 0.074 0.926 26 O -0.568 6.568 27 N -0.506 5.506 28 H 0.433 0.567 29 H 0.185 0.815 30 H 0.168 0.832 31 H 0.408 0.592 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.038 0.962 35 H 0.033 0.967 36 H 0.249 0.751 37 H 0.002 0.998 38 H 0.039 0.961 39 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.121 -10.391 16.645 19.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.015 4.015 3 C -0.030 4.030 4 C -0.139 4.139 5 C -0.141 4.141 6 C -0.128 4.128 7 C 0.375 3.625 8 O -0.436 6.436 9 N -0.366 5.366 10 C 0.023 3.977 11 C -0.108 4.108 12 H 0.110 0.890 13 C 0.013 3.987 14 N -0.350 5.350 15 C -0.374 4.374 16 H 0.100 0.900 17 C -0.255 4.255 18 N -0.595 5.595 19 Si 0.804 3.196 20 H -0.211 1.211 21 H -0.194 1.194 22 H -0.223 1.223 23 C 0.030 3.970 24 C 0.036 3.964 25 H 0.092 0.908 26 O -0.375 6.375 27 N -0.104 5.104 28 H 0.274 0.726 29 H 0.202 0.798 30 H 0.186 0.814 31 H 0.244 0.756 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.020 0.980 38 H 0.057 0.943 39 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -3.585 -10.538 16.932 20.263 hybrid contribution 0.117 1.484 -1.951 2.454 sum -3.468 -9.055 14.980 17.845 Atomic orbital electron populations 1.81383 1.12459 1.10784 1.06865 1.24337 0.90778 0.92602 0.93806 1.15582 0.82473 1.14803 0.90107 1.21588 0.90596 1.03008 0.98678 1.21509 0.98618 1.02019 0.92001 1.20411 0.82073 1.13845 0.96520 1.17287 0.87472 0.76525 0.81218 1.90851 1.25343 1.53227 1.74153 1.45821 1.10776 1.70124 1.09848 1.21209 0.87392 1.01712 0.87355 1.22231 0.96957 0.97502 0.94078 0.88980 1.21556 0.96870 0.90735 0.89557 1.44575 1.53179 1.14586 1.22640 1.19393 1.31870 0.89733 0.96451 0.89966 1.25652 1.02019 1.02197 0.95593 1.70131 1.50959 1.34782 1.03616 0.85136 0.78145 0.79770 0.76521 1.21100 1.19416 1.22271 1.21849 0.92511 0.90619 0.92025 1.23016 0.95333 0.84710 0.93343 0.90802 1.86355 1.54302 1.31096 1.65761 1.41847 1.04561 1.52040 1.11973 0.72634 0.79760 0.81401 0.75623 0.90436 0.91319 0.94411 0.94871 0.94214 0.97984 0.94293 0.75588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.26 18.54 19.00 0.35 -8.91 16 2 C 0.30 4.73 15.89 88.33 1.40 6.14 16 3 C 0.09 1.09 6.93 39.59 0.27 1.36 16 4 C -0.11 -1.13 10.80 22.50 0.24 -0.88 16 5 C -0.12 -1.57 10.60 22.48 0.24 -1.33 16 6 C -0.01 -0.16 7.04 40.58 0.29 0.12 16 7 C 0.59 12.74 7.80 86.55 0.68 13.42 16 8 O -0.56 -16.19 16.87 -4.20 -0.07 -16.26 16 9 N -0.71 -14.18 5.40 -466.72 -2.52 -16.70 16 10 C 0.15 3.61 5.01 86.38 0.43 4.04 16 11 C -0.09 -2.61 2.74 -9.61 -0.03 -2.63 16 12 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 13 C 0.14 4.92 6.52 86.73 0.57 5.48 16 14 N -0.62 -29.89 3.39 -691.56 -2.35 -32.24 16 15 C -0.25 -13.12 10.24 84.03 0.86 -12.26 16 16 H 0.08 4.19 7.85 -2.91 -0.02 4.17 16 17 C -0.06 -3.33 5.40 84.86 0.46 -2.87 16 18 N -0.95 -54.92 10.68 21.65 0.23 -54.69 16 19 Si 0.98 44.13 29.56 68.60 2.03 46.16 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 22 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 23 C 0.16 7.18 5.16 86.93 0.45 7.63 16 24 C 0.10 3.27 3.89 32.06 0.12 3.39 16 25 H 0.07 2.36 8.05 -2.38 -0.02 2.34 16 26 O -0.57 -17.22 13.47 -148.98 -2.01 -19.22 16 27 N -0.51 -5.99 6.02 -175.94 -1.06 -7.04 16 28 H 0.43 3.42 8.15 -92.70 -0.76 2.66 16 29 H 0.19 0.86 8.06 -2.91 -0.02 0.83 16 30 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 31 H 0.41 6.16 7.43 -92.71 -0.69 5.47 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 1.81 8.06 -2.39 -0.02 1.80 16 34 H 0.04 1.31 7.77 -2.39 -0.02 1.29 16 35 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 37 H 0.00 0.11 8.07 -2.39 -0.02 0.09 16 38 H 0.04 2.01 6.95 -2.39 -0.02 2.00 16 39 H 0.39 9.06 9.12 -74.05 -0.68 8.38 16 Total: -1.00 -72.46 343.57 -0.40 -72.86 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -0.99 Total: 14.44 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 5.98 Total: 21.61 kcal Atomic # 7 Polarization: -114.24 SS G_CDS: -5.34 Total: -119.58 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -2.08 Total: -35.49 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -72.46 -0.40 -72.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957982827.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.412 kcal (2) G-P(sol) polarization free energy of solvation -72.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds