Wall clock time and date at job start Fri Apr 10 2020 17:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.38081 * 125.89759 * 358.64705 * 3 2 1 5 5 C 1.39361 * 107.51436 * 179.72496 * 4 3 2 6 6 C 1.37997 * 107.48363 * 0.38845 * 5 4 3 7 7 C 1.47058 * 125.91600 * 179.87472 * 6 5 4 8 8 O 1.21650 * 120.00293 * 359.69500 * 7 6 5 9 9 N 1.34781 * 120.00086 * 179.68610 * 7 6 5 10 10 C 1.46500 * 119.99697 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.46719 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.64028 * 303.31454 * 11 10 9 13 13 C 1.54324 * 110.71890 * 66.45585 * 11 10 9 14 14 N 1.47020 * 107.39983 * 140.47837 * 13 11 10 15 15 C 1.36946 * 125.64749 * 181.10549 * 14 13 11 16 16 H 1.08000 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99867 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99930 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99829 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47348 * 59.99174 * 19 17 15 21 21 H 1.48492 * 109.47116 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46964 * 299.99484 * 19 17 15 23 23 C 1.47743 * 108.53125 * 1.18235 * 14 13 11 24 24 C 1.54909 * 104.83995 * 335.74644 * 23 14 13 25 25 H 1.09001 * 111.03628 * 155.18095 * 24 23 14 26 26 O 1.42891 * 111.00999 * 279.02161 * 24 23 14 27 27 N 1.36729 * 125.89236 * 178.60870 * 3 2 1 28 28 H 0.96996 * 125.68739 * 0.06923 * 27 3 2 29 29 H 1.07996 * 126.23820 * 359.96837 * 4 3 2 30 30 H 1.07999 * 126.25443 * 180.23923 * 5 4 3 31 31 H 0.97000 * 119.99671 * 0.02562 * 9 7 6 32 32 H 1.08996 * 109.47222 * 60.01303 * 10 9 7 33 33 H 1.08997 * 109.47438 * 300.00126 * 10 9 7 34 34 H 1.09002 * 109.88322 * 259.97367 * 13 11 10 35 35 H 1.09000 * 109.88025 * 20.98532 * 13 11 10 36 36 H 0.96998 * 119.99524 * 180.02562 * 18 17 15 37 37 H 1.09003 * 110.29227 * 216.94505 * 23 14 13 38 38 H 1.08996 * 110.53057 * 94.67717 * 23 14 13 39 39 H 0.96705 * 114.00245 * 292.19608 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3782 -1.1172 0.0264 5 6 4.7004 -0.6774 0.0097 6 6 4.6782 0.7021 -0.0178 7 6 5.8551 1.5836 -0.0399 8 8 6.9736 1.1053 -0.0290 9 7 5.6946 2.9214 -0.0724 10 6 6.8671 3.7994 -0.0939 11 6 6.4104 5.2593 -0.1286 12 1 5.7607 5.4383 -0.9853 13 6 5.6976 5.6398 1.1862 14 7 6.1194 7.0041 1.5361 15 6 5.7263 7.7006 2.6477 16 1 5.0481 7.2486 3.3563 17 6 6.1987 8.9880 2.8630 18 7 7.0247 9.5390 1.9991 19 14 5.6619 9.9384 4.3789 20 1 6.0715 9.1972 5.5988 21 1 6.3025 11.2781 4.3758 22 1 4.1852 10.0954 4.3676 23 6 7.0358 7.4959 0.4867 24 6 7.6316 6.2162 -0.1514 25 1 7.9607 6.4053 -1.1732 26 8 8.7022 5.6992 0.6412 27 7 3.3691 1.1083 -0.0269 28 1 3.0622 2.0282 -0.0483 29 1 3.0473 -2.1450 0.0512 30 1 5.5814 -1.3020 0.0191 31 1 4.8028 3.3028 -0.0808 32 1 7.4658 3.5846 -0.9790 33 1 7.4661 3.6277 0.8005 34 1 4.6172 5.6108 1.0440 35 1 5.9859 4.9481 1.9777 36 1 7.3551 10.4385 2.1498 37 1 7.8262 8.1024 0.9290 38 1 6.4887 8.0723 -0.2591 39 1 9.4876 6.2632 0.6574 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957982828.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:22 Heat of formation + Delta-G solvation = 22.492178 kcal Electronic energy + Delta-G solvation = -23912.460018 eV Core-core repulsion = 20243.086997 eV Total energy + Delta-G solvation = -3669.373021 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.79741 -39.45982 -38.24191 -36.84203 -35.08850 -34.61187 -32.39920 -31.64163 -30.57219 -29.48238 -27.80574 -25.77911 -24.41751 -23.17131 -21.53080 -20.79202 -20.49587 -20.09883 -19.40050 -17.70464 -17.37803 -16.46099 -15.76560 -15.72794 -15.05588 -14.92784 -14.85186 -14.37180 -14.27458 -13.92861 -13.83582 -13.53725 -13.47151 -13.18980 -13.01806 -12.74589 -12.60778 -12.42305 -12.03363 -11.47135 -11.31405 -10.85117 -10.75894 -10.51571 -10.44163 -10.16089 -9.96805 -9.88569 -9.58629 -9.20972 -9.16464 -8.74755 -8.68225 -6.92008 -5.75662 -3.15861 0.60974 1.81222 1.83388 2.66097 2.95504 3.02633 3.12918 3.35194 3.39839 3.40636 3.55081 4.39639 4.49225 4.65554 4.73104 4.84251 5.02508 5.20429 5.29861 5.43759 5.46488 5.51741 5.66730 5.79748 5.92659 6.02036 6.07413 6.23076 6.26266 6.32471 6.34042 6.50597 6.63952 6.74493 6.98716 7.19611 7.31284 7.49782 7.68208 7.97481 8.16229 8.30096 9.11252 9.72946 10.36617 11.29488 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.003194 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.046009 B = 8764.179364 C =10038.405472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C 0.275 3.725 3 C 0.086 3.914 4 C -0.124 4.124 5 C -0.116 4.116 6 C 0.003 3.997 7 C 0.582 3.418 8 O -0.519 6.519 9 N -0.724 5.724 10 C 0.140 3.860 11 C -0.108 4.108 12 H 0.085 0.915 13 C 0.144 3.856 14 N -0.597 5.597 15 C -0.222 4.222 16 H 0.077 0.923 17 C -0.010 4.010 18 N -0.925 5.925 19 Si 0.916 3.084 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.286 1.286 23 C 0.126 3.874 24 C 0.083 3.917 25 H 0.056 0.944 26 O -0.557 6.557 27 N -0.514 5.514 28 H 0.424 0.576 29 H 0.158 0.842 30 H 0.162 0.838 31 H 0.394 0.606 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.016 0.984 35 H 0.029 0.971 36 H 0.253 0.747 37 H 0.112 0.888 38 H 0.020 0.980 39 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.994 -15.972 -7.668 17.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.074 5.074 2 C -0.041 4.041 3 C -0.031 4.031 4 C -0.152 4.152 5 C -0.142 4.142 6 C -0.115 4.115 7 C 0.368 3.632 8 O -0.394 6.394 9 N -0.374 5.374 10 C 0.017 3.983 11 C -0.127 4.127 12 H 0.104 0.896 13 C 0.018 3.982 14 N -0.323 5.323 15 C -0.350 4.350 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.574 5.574 19 Si 0.746 3.254 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.212 1.212 23 C 0.000 4.000 24 C 0.023 3.977 25 H 0.073 0.927 26 O -0.363 6.363 27 N -0.112 5.112 28 H 0.263 0.737 29 H 0.176 0.824 30 H 0.180 0.820 31 H 0.227 0.773 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.034 0.966 35 H 0.047 0.953 36 H 0.064 0.936 37 H 0.130 0.870 38 H 0.037 0.963 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -4.336 -16.364 -7.457 18.499 hybrid contribution -0.267 1.789 0.624 1.914 sum -4.603 -14.575 -6.833 16.742 Atomic orbital electron populations 1.81348 1.11221 1.05230 1.09559 1.24330 0.90832 0.95167 0.93743 1.15579 0.83145 0.87911 1.16505 1.21276 0.91581 0.97364 1.04981 1.21288 0.97710 0.91612 1.03593 1.20804 0.82284 0.95266 1.13160 1.17060 0.87202 0.81609 0.77350 1.90872 1.23686 1.75107 1.49743 1.46059 1.10839 1.05747 1.74769 1.21333 0.86289 0.87233 1.03426 1.22527 0.97432 0.93017 0.99736 0.89632 1.21306 0.95166 0.88874 0.92887 1.44385 1.53079 1.10964 1.23825 1.19026 1.22456 0.95638 0.97876 0.90536 1.24762 0.99828 0.97108 0.98866 1.69726 1.36338 1.15259 1.36062 0.86131 0.77919 0.79074 0.82253 1.21082 1.21520 1.21229 1.22638 0.95530 0.91659 0.90143 1.23173 0.86552 0.95156 0.92865 0.92663 1.86382 1.26343 1.50365 1.73194 1.41926 1.05312 1.08498 1.55420 0.73693 0.82408 0.82046 0.77265 0.91272 0.89586 0.96641 0.95340 0.93626 0.87043 0.96253 0.77677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.45 18.54 41.84 0.78 -3.67 16 2 C 0.28 2.45 15.89 -22.47 -0.36 2.10 16 3 C 0.09 0.65 6.93 -83.81 -0.58 0.07 16 4 C -0.12 -0.85 10.80 -39.22 -0.42 -1.27 16 5 C -0.12 -0.97 10.60 -39.25 -0.42 -1.39 16 6 C 0.00 0.03 7.04 -82.04 -0.58 -0.55 16 7 C 0.58 7.11 7.80 -12.68 -0.10 7.01 16 8 O -0.52 -8.20 16.87 5.23 0.09 -8.12 16 9 N -0.72 -8.22 5.40 -61.50 -0.33 -8.55 16 10 C 0.14 1.96 4.59 -4.04 -0.02 1.94 16 11 C -0.11 -1.66 2.95 -88.78 -0.26 -1.92 16 12 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 13 C 0.14 2.76 6.52 -3.06 -0.02 2.74 16 14 N -0.60 -14.54 3.41 -169.81 -0.58 -15.12 16 15 C -0.22 -6.01 10.28 -15.05 -0.15 -6.16 16 16 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 17 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 18 N -0.93 -25.94 10.11 55.49 0.56 -25.38 16 19 Si 0.92 21.62 29.55 -169.99 -5.02 16.59 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.13 2.81 5.65 -2.35 -0.01 2.80 16 24 C 0.08 1.43 4.17 -24.58 -0.10 1.33 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 O -0.56 -9.68 12.22 -35.23 -0.43 -10.11 16 27 N -0.51 -3.73 6.02 -6.96 -0.04 -3.78 16 28 H 0.42 2.20 8.15 -40.82 -0.33 1.87 16 29 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 30 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.39 3.50 7.43 -40.82 -0.30 3.20 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 1.45 7.44 -51.93 -0.39 1.06 16 34 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.03 0.58 7.76 -51.93 -0.40 0.18 16 36 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.11 2.83 5.89 -51.93 -0.31 2.52 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.38 5.31 9.12 45.56 0.42 5.72 16 LS Contribution 340.86 15.07 5.14 5.14 Total: -1.00 -33.49 340.86 -6.79 -40.28 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -3.82 Total: 6.38 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -3.12 Total: 6.32 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.38 Total: -56.49 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.34 Total: -18.22 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.49 -6.79 -40.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957982828.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.770 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds