Wall clock time and date at job start Fri Apr 10 2020 17:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.38081 * 125.89759 * 358.64705 * 3 2 1 5 5 C 1.39361 * 107.51436 * 179.72496 * 4 3 2 6 6 C 1.37997 * 107.48363 * 0.38845 * 5 4 3 7 7 C 1.47058 * 125.91600 * 179.87472 * 6 5 4 8 8 O 1.21650 * 120.00293 * 359.69500 * 7 6 5 9 9 N 1.34781 * 120.00086 * 179.68610 * 7 6 5 10 10 C 1.46500 * 119.99697 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.46719 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.64028 * 303.31454 * 11 10 9 13 13 C 1.54324 * 110.71890 * 66.45585 * 11 10 9 14 14 N 1.47020 * 107.39983 * 140.47837 * 13 11 10 15 15 C 1.36946 * 125.64749 * 181.10549 * 14 13 11 16 16 H 1.08000 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99867 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99930 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99829 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47348 * 59.99174 * 19 17 15 21 21 H 1.48492 * 109.47116 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46964 * 299.99484 * 19 17 15 23 23 C 1.47743 * 108.53125 * 1.18235 * 14 13 11 24 24 C 1.54909 * 104.83995 * 335.74644 * 23 14 13 25 25 H 1.09001 * 111.03628 * 155.18095 * 24 23 14 26 26 O 1.42891 * 111.00999 * 279.02161 * 24 23 14 27 27 N 1.36729 * 125.89236 * 178.60870 * 3 2 1 28 28 H 0.96996 * 125.68739 * 0.06923 * 27 3 2 29 29 H 1.07996 * 126.23820 * 359.96837 * 4 3 2 30 30 H 1.07999 * 126.25443 * 180.23923 * 5 4 3 31 31 H 0.97000 * 119.99671 * 0.02562 * 9 7 6 32 32 H 1.08996 * 109.47222 * 60.01303 * 10 9 7 33 33 H 1.08997 * 109.47438 * 300.00126 * 10 9 7 34 34 H 1.09002 * 109.88322 * 259.97367 * 13 11 10 35 35 H 1.09000 * 109.88025 * 20.98532 * 13 11 10 36 36 H 0.96998 * 119.99524 * 180.02562 * 18 17 15 37 37 H 1.09003 * 110.29227 * 216.94505 * 23 14 13 38 38 H 1.08996 * 110.53057 * 94.67717 * 23 14 13 39 39 H 0.96705 * 114.00245 * 292.19608 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3782 -1.1172 0.0264 5 6 4.7004 -0.6774 0.0097 6 6 4.6782 0.7021 -0.0178 7 6 5.8551 1.5836 -0.0399 8 8 6.9736 1.1053 -0.0290 9 7 5.6946 2.9214 -0.0724 10 6 6.8671 3.7994 -0.0939 11 6 6.4104 5.2593 -0.1286 12 1 5.7607 5.4383 -0.9853 13 6 5.6976 5.6398 1.1862 14 7 6.1194 7.0041 1.5361 15 6 5.7263 7.7006 2.6477 16 1 5.0481 7.2486 3.3563 17 6 6.1987 8.9880 2.8630 18 7 7.0247 9.5390 1.9991 19 14 5.6619 9.9384 4.3789 20 1 6.0715 9.1972 5.5988 21 1 6.3025 11.2781 4.3758 22 1 4.1852 10.0954 4.3676 23 6 7.0358 7.4959 0.4867 24 6 7.6316 6.2162 -0.1514 25 1 7.9607 6.4053 -1.1732 26 8 8.7022 5.6992 0.6412 27 7 3.3691 1.1083 -0.0269 28 1 3.0622 2.0282 -0.0483 29 1 3.0473 -2.1450 0.0512 30 1 5.5814 -1.3020 0.0191 31 1 4.8028 3.3028 -0.0808 32 1 7.4658 3.5846 -0.9790 33 1 7.4661 3.6277 0.8005 34 1 4.6172 5.6108 1.0440 35 1 5.9859 4.9481 1.9777 36 1 7.3551 10.4385 2.1498 37 1 7.8262 8.1024 0.9290 38 1 6.4887 8.0723 -0.2591 39 1 9.4876 6.2632 0.6574 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957982828.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:21 Heat of formation + Delta-G solvation = -3.758180 kcal Electronic energy + Delta-G solvation = -23913.598319 eV Core-core repulsion = 20243.086997 eV Total energy + Delta-G solvation = -3670.511322 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.47630 -40.54546 -39.60255 -37.62045 -36.32283 -36.15498 -34.02261 -32.38833 -31.69276 -30.69395 -29.35952 -27.32777 -25.74665 -24.28625 -22.46114 -21.96309 -21.37651 -21.33554 -20.45776 -19.13885 -18.57765 -17.96440 -16.86647 -16.78860 -16.62425 -15.97581 -15.82320 -15.59878 -15.50778 -15.25234 -14.70782 -14.56418 -14.43088 -14.28220 -14.04478 -13.85868 -13.75371 -13.59808 -13.28609 -13.17076 -13.01270 -12.62894 -12.37079 -12.04145 -11.86881 -11.83438 -11.70424 -11.20513 -10.80568 -10.65176 -10.23603 -10.16021 -9.38322 -8.85629 -7.79625 -5.21315 -0.10197 1.12364 1.13589 1.45746 1.47920 1.54066 1.93747 2.07005 2.27789 2.36350 2.48286 2.90397 3.28407 3.36001 3.60413 3.71714 3.91131 3.96483 4.01022 4.13933 4.26466 4.44900 4.61239 4.66604 4.83300 4.85114 4.93331 5.01909 5.13868 5.25547 5.35832 5.39883 5.45873 5.50676 5.71526 5.77946 6.04964 6.28620 6.29743 6.44125 6.97628 7.05660 7.10695 7.77791 8.40523 9.22499 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.003194 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.046009 B = 8764.179364 C =10038.405472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.300 3.700 3 C 0.089 3.911 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.009 4.009 7 C 0.585 3.415 8 O -0.560 6.560 9 N -0.715 5.715 10 C 0.155 3.845 11 C -0.092 4.092 12 H 0.116 0.884 13 C 0.140 3.860 14 N -0.621 5.621 15 C -0.238 4.238 16 H 0.077 0.923 17 C -0.064 4.064 18 N -0.947 5.947 19 Si 0.976 3.024 20 H -0.281 1.281 21 H -0.293 1.293 22 H -0.279 1.279 23 C 0.125 3.875 24 C 0.093 3.907 25 H 0.091 0.909 26 O -0.569 6.569 27 N -0.505 5.505 28 H 0.433 0.567 29 H 0.185 0.815 30 H 0.167 0.833 31 H 0.408 0.592 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.032 0.968 35 H 0.015 0.985 36 H 0.247 0.753 37 H 0.078 0.922 38 H 0.002 0.998 39 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.881 -17.464 -8.351 19.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.015 4.015 3 C -0.029 4.029 4 C -0.139 4.139 5 C -0.143 4.143 6 C -0.128 4.128 7 C 0.373 3.627 8 O -0.438 6.438 9 N -0.366 5.366 10 C 0.031 3.969 11 C -0.111 4.111 12 H 0.134 0.866 13 C 0.015 3.985 14 N -0.347 5.347 15 C -0.367 4.367 16 H 0.094 0.906 17 C -0.256 4.256 18 N -0.596 5.596 19 Si 0.804 3.196 20 H -0.207 1.207 21 H -0.219 1.219 22 H -0.205 1.205 23 C 0.000 4.000 24 C 0.033 3.967 25 H 0.108 0.892 26 O -0.376 6.376 27 N -0.104 5.104 28 H 0.274 0.726 29 H 0.203 0.797 30 H 0.185 0.815 31 H 0.243 0.757 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.033 0.967 36 H 0.057 0.943 37 H 0.096 0.904 38 H 0.020 0.980 39 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -5.257 -17.857 -8.149 20.321 hybrid contribution 0.006 2.207 0.852 2.366 sum -5.252 -15.650 -7.297 18.049 Atomic orbital electron populations 1.81383 1.12420 1.06579 1.11054 1.24317 0.90743 0.93897 0.92521 1.15578 0.82494 0.88315 1.16553 1.21585 0.90544 0.98426 1.03296 1.21505 0.98643 0.91278 1.02845 1.20411 0.82085 0.95197 1.15104 1.17328 0.87458 0.81702 0.76248 1.90852 1.25454 1.75769 1.51703 1.45885 1.10852 1.05475 1.74422 1.20987 0.86850 0.86637 1.02420 1.22475 0.96550 0.93398 0.98677 0.86641 1.21463 0.96394 0.86206 0.94431 1.44693 1.53694 1.12702 1.23587 1.19369 1.22233 0.96182 0.98911 0.90562 1.25528 1.00413 0.98154 1.01554 1.69974 1.37274 1.15024 1.37370 0.85191 0.77670 0.77451 0.79250 1.20717 1.21882 1.20496 1.22500 0.94250 0.93835 0.89414 1.23082 0.86965 0.92885 0.93771 0.89170 1.86371 1.26941 1.50736 1.73576 1.41832 1.04497 1.09075 1.54955 0.72606 0.79741 0.81516 0.75659 0.90375 0.92543 0.95009 0.96689 0.94325 0.90444 0.98039 0.76262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.19 18.54 19.00 0.35 -8.84 16 2 C 0.30 4.73 15.89 88.33 1.40 6.13 16 3 C 0.09 1.11 6.93 39.59 0.27 1.38 16 4 C -0.11 -1.17 10.80 22.50 0.24 -0.93 16 5 C -0.12 -1.67 10.60 22.48 0.24 -1.43 16 6 C -0.01 -0.16 7.04 40.58 0.29 0.13 16 7 C 0.59 13.44 7.80 86.56 0.68 14.11 16 8 O -0.56 -17.29 16.87 -4.19 -0.07 -17.36 16 9 N -0.72 -14.88 5.40 -466.71 -2.52 -17.40 16 10 C 0.15 4.06 4.59 86.38 0.40 4.46 16 11 C -0.09 -2.64 2.95 -9.60 -0.03 -2.67 16 12 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 13 C 0.14 5.25 6.52 86.73 0.57 5.81 16 14 N -0.62 -30.38 3.41 -691.17 -2.35 -32.73 16 15 C -0.24 -13.02 10.28 84.03 0.86 -12.16 16 16 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 17 C -0.06 -3.53 5.49 84.86 0.47 -3.06 16 18 N -0.95 -54.32 10.11 21.65 0.22 -54.10 16 19 Si 0.98 44.86 29.55 68.60 2.03 46.89 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 21 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 C 0.13 5.66 5.65 86.79 0.49 6.15 16 24 C 0.09 3.08 4.17 31.99 0.13 3.21 16 25 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 26 O -0.57 -19.31 12.22 -148.98 -1.82 -21.13 16 27 N -0.51 -6.11 6.02 -175.93 -1.06 -7.16 16 28 H 0.43 3.42 8.15 -92.71 -0.76 2.66 16 29 H 0.19 0.92 8.06 -2.91 -0.02 0.89 16 30 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 31 H 0.41 6.23 7.43 -92.71 -0.69 5.54 16 32 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.06 1.86 7.44 -2.39 -0.02 1.84 16 34 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.02 0.61 7.76 -2.39 -0.02 0.59 16 36 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 37 H 0.08 4.04 5.89 -2.39 -0.01 4.03 16 38 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 39 H 0.39 10.78 9.12 -74.05 -0.68 10.11 16 Total: -1.00 -73.82 340.86 -0.20 -74.02 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -0.99 Total: 16.67 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: 6.01 Total: 21.14 kcal Atomic # 7 Polarization: -114.87 SS G_CDS: -5.36 Total: -120.23 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -1.89 Total: -38.50 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -73.82 -0.20 -74.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957982828.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.262 kcal (2) G-P(sol) polarization free energy of solvation -73.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds