Wall clock time and date at job start Fri Apr 10 2020 17:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86792 * 120.00032 * 2 1 4 4 H 1.48501 * 109.47242 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47073 * 299.99565 * 3 2 1 6 6 H 1.48493 * 109.47516 * 59.99868 * 3 2 1 7 7 C 1.38815 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99959 * 170.57212 * 7 2 1 9 9 N 1.36940 * 119.99892 * 350.56612 * 7 2 1 10 10 C 1.48147 * 127.83703 * 164.33524 * 9 7 2 11 11 C 1.57686 * 104.67499 * 139.77837 * 10 9 7 12 12 H 1.09008 * 120.32456 * 244.64405 * 11 10 9 13 13 C 1.53000 * 116.11168 * 87.31066 * 11 10 9 14 14 H 1.08999 * 117.40586 * 16.95332 * 13 11 10 15 15 C 1.53005 * 117.44275 * 161.64019 * 13 11 10 16 16 N 1.46495 * 109.46829 * 244.24168 * 15 13 11 17 17 C 1.34780 * 120.00100 * 180.02562 * 16 15 13 18 18 O 1.21603 * 119.99622 * 359.97438 * 17 16 15 19 19 C 1.47564 * 120.00369 * 179.97438 * 17 16 15 20 20 C 1.38050 * 119.73031 * 179.97438 * 19 17 16 21 21 N 1.34872 * 119.95322 * 180.02562 * 20 19 17 22 22 H 0.96997 * 120.31117 * 180.24864 * 21 20 19 23 23 C 1.34956 * 119.38494 * 359.97438 * 21 20 19 24 24 O 1.21860 * 120.27549 * 180.02562 * 23 21 20 25 25 C 1.41789 * 119.45625 * 359.97438 * 23 21 20 26 26 N 1.30609 * 120.03475 * 0.03006 * 25 23 21 27 27 C 1.53001 * 60.55398 * 269.28475 * 13 11 10 28 28 H 1.09005 * 119.54496 * 248.22540 * 27 13 11 29 29 C 1.48146 * 127.84133 * 344.34152 * 9 7 2 30 30 H 0.97002 * 119.99647 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.41170 * 259.20811 * 10 9 7 32 32 H 1.09000 * 110.40519 * 21.51382 * 10 9 7 33 33 H 1.09000 * 109.47150 * 124.23893 * 15 13 11 34 34 H 1.09005 * 109.46657 * 4.23664 * 15 13 11 35 35 H 0.97003 * 120.00575 * 359.97438 * 16 15 13 36 36 H 1.08002 * 120.02351 * 0.02626 * 20 19 17 37 37 H 1.07997 * 119.98629 * 180.02562 * 25 23 21 38 38 H 1.08999 * 110.40655 * 100.80012 * 29 9 7 39 39 H 1.08998 * 110.40393 * 338.36474 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0793 -1.2086 -0.1527 9 7 1.3394 -2.3800 0.1955 10 6 1.8183 -3.7548 -0.0789 11 6 1.2958 -4.6102 1.1384 12 1 2.0011 -5.0726 1.8291 13 6 -0.1132 -5.1898 0.9987 14 1 -0.5441 -5.2255 -0.0019 15 6 -0.4935 -6.3492 1.9218 16 7 -0.7429 -7.5498 1.1203 17 6 -1.0956 -8.7020 1.7242 18 8 -1.2063 -8.7450 2.9344 19 6 -1.3474 -9.9113 0.9169 20 6 -1.7078 -11.0885 1.5413 21 7 -1.9385 -12.1966 0.8079 22 1 -2.1955 -13.0256 1.2410 23 6 -1.8139 -12.1399 -0.5347 24 8 -2.0189 -13.1311 -1.2132 25 6 -1.4434 -10.9171 -1.1495 26 7 -1.2251 -9.8574 -0.4180 27 6 0.0734 -3.8121 1.6374 28 1 -0.1320 -3.6798 2.6997 29 6 -0.0300 -2.5685 0.7284 30 1 -0.4850 0.8401 -0.0004 31 1 1.4043 -4.1212 -1.0183 32 1 2.9076 -3.7787 -0.1097 33 1 -1.3942 -6.0902 2.4783 34 1 0.3220 -6.5409 2.6192 35 1 -0.6550 -7.5155 0.1549 36 1 -1.8050 -11.1222 2.6165 37 1 -1.3416 -10.8619 -2.2233 38 1 -0.7328 -2.7496 -0.0849 39 1 -0.3351 -1.6977 1.3087 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978652657.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:00 Heat of formation + Delta-G solvation = 36.285501 kcal Electronic energy + Delta-G solvation = -23344.390206 eV Core-core repulsion = 19675.615308 eV Total energy + Delta-G solvation = -3668.774898 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.25414 -39.83801 -38.67323 -37.84691 -35.83259 -34.97016 -33.32603 -31.21424 -30.65210 -27.54313 -26.96425 -25.96130 -25.29859 -24.31353 -21.75181 -21.08688 -20.27400 -19.36615 -19.12251 -18.92003 -17.54902 -16.80395 -16.56951 -16.51676 -15.93639 -15.33739 -15.22152 -14.90958 -14.54192 -14.18516 -13.84198 -13.58940 -13.28461 -12.92185 -12.70166 -12.61807 -12.33770 -12.05139 -11.86121 -11.25291 -11.08081 -10.84689 -10.63964 -10.51916 -10.26377 -10.09458 -9.96790 -9.74025 -9.44852 -9.16125 -9.04191 -8.77368 -8.63132 -6.86814 -5.80474 -3.14441 -0.06759 0.72288 1.93525 2.46748 2.94212 3.27604 3.37593 3.43789 3.46211 3.60720 3.68330 4.12476 4.24406 4.44811 4.46791 4.73678 4.90785 5.28867 5.34313 5.41592 5.45317 5.51707 5.58755 5.76744 5.79304 5.80235 5.89753 5.95067 6.23598 6.31112 6.54788 6.67480 6.70713 6.90605 6.91661 7.10187 7.36041 7.43984 7.53341 7.71940 8.01435 8.20562 9.10751 9.73590 10.50758 11.34011 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.036696 B = 0.002274 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.845608 B =12310.513891 C =12709.388980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.595 5.595 10 C 0.155 3.845 11 C -0.171 4.171 12 H 0.107 0.893 13 C -0.154 4.154 14 H 0.104 0.896 15 C 0.154 3.846 16 N -0.701 5.701 17 C 0.586 3.414 18 O -0.549 6.549 19 C -0.075 4.075 20 C 0.176 3.824 21 N -0.587 5.587 22 H 0.426 0.574 23 C 0.477 3.523 24 O -0.521 6.521 25 C 0.045 3.955 26 N -0.371 5.371 27 C -0.162 4.162 28 H 0.102 0.898 29 C 0.183 3.817 30 H 0.254 0.746 31 H 0.028 0.972 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.413 0.587 36 H 0.191 0.809 37 H 0.196 0.804 38 H 0.024 0.976 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.404 -23.192 3.015 23.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.029 3.971 11 C -0.191 4.191 12 H 0.125 0.875 13 C -0.173 4.173 14 H 0.122 0.878 15 C 0.031 3.969 16 N -0.351 5.351 17 C 0.371 3.629 18 O -0.428 6.428 19 C -0.199 4.199 20 C 0.039 3.961 21 N -0.220 5.220 22 H 0.266 0.734 23 C 0.273 3.727 24 O -0.396 6.396 25 C -0.146 4.146 26 N -0.086 5.086 27 C -0.182 4.182 28 H 0.120 0.880 29 C 0.058 3.942 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.249 0.751 36 H 0.208 0.792 37 H 0.213 0.787 38 H 0.042 0.958 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.339 -22.586 3.140 23.212 hybrid contribution 0.073 -0.291 0.204 0.363 sum -4.266 -22.876 3.343 23.510 Atomic orbital electron populations 1.69913 1.05060 1.25312 1.55861 1.24901 0.95649 0.97998 1.01806 0.86044 0.78888 0.83534 0.77275 1.20365 1.21701 1.21613 1.19038 0.90888 0.82376 1.43112 0.90532 1.45158 1.13738 0.99987 1.72904 1.21723 0.97120 0.85834 0.92471 1.24708 0.89705 1.02219 1.02460 0.87510 1.22554 1.00596 0.93913 1.00252 0.87755 1.20956 1.01163 0.82030 0.92765 1.45805 1.68018 1.09334 1.11959 1.17169 0.77218 0.82169 0.86339 1.90820 1.53822 1.84892 1.13216 1.20447 1.14576 0.94813 0.90050 1.23230 0.87909 0.85068 0.99877 1.43701 1.55274 1.13471 1.09508 0.73410 1.18822 0.80341 0.92322 0.81261 1.91018 1.50410 1.37176 1.60951 1.24790 1.01700 0.86133 1.01952 1.67708 1.05174 1.30611 1.05132 1.24179 1.02286 0.91608 1.00160 0.88011 1.21080 0.86899 0.92747 0.93498 0.93609 0.95460 0.93341 0.90862 0.91187 0.75111 0.79168 0.78728 0.95801 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.88 55.49 0.60 -26.01 16 2 C -0.01 -0.18 5.39 -17.43 -0.09 -0.28 16 3 Si 0.91 21.80 29.56 -169.99 -5.03 16.77 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.23 -6.25 10.35 -15.06 -0.16 -6.40 16 8 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 9 N -0.59 -15.05 3.38 -166.73 -0.56 -15.62 16 10 C 0.16 3.18 7.09 -0.57 0.00 3.18 16 11 C -0.17 -2.91 7.03 -87.39 -0.61 -3.53 16 12 H 0.11 1.67 8.12 -51.92 -0.42 1.25 16 13 C -0.15 -2.29 5.34 -90.62 -0.48 -2.77 16 14 H 0.10 1.57 8.04 -51.93 -0.42 1.15 16 15 C 0.15 1.97 5.95 -4.04 -0.02 1.94 16 16 N -0.70 -8.01 5.54 -61.33 -0.34 -8.35 16 17 C 0.59 6.68 7.79 -12.46 -0.10 6.59 16 18 O -0.55 -7.52 16.28 5.27 0.09 -7.43 16 19 C -0.08 -0.66 6.71 -83.12 -0.56 -1.22 16 20 C 0.18 0.98 10.77 -16.28 -0.18 0.81 16 21 N -0.59 -2.89 5.28 -14.19 -0.08 -2.96 16 22 H 0.43 0.89 8.92 -40.82 -0.36 0.52 16 23 C 0.48 3.79 7.74 -14.82 -0.11 3.67 16 24 O -0.52 -5.81 17.95 5.05 0.09 -5.72 16 25 C 0.05 0.33 11.23 -16.72 -0.19 0.15 16 26 N -0.37 -3.23 9.62 -9.34 -0.09 -3.32 16 27 C -0.16 -2.97 6.77 -89.22 -0.60 -3.57 16 28 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 29 C 0.18 4.32 5.70 -2.41 -0.01 4.31 16 30 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.92 7.94 -51.93 -0.41 0.51 16 35 H 0.41 4.33 7.72 -40.82 -0.32 4.01 16 36 H 0.19 0.64 7.58 -52.49 -0.40 0.24 16 37 H 0.20 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 2.36 6.53 -51.93 -0.34 2.02 16 LS Contribution 337.46 15.07 5.09 5.09 Total: -1.00 -34.31 337.46 -8.11 -42.41 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -4.75 Total: 2.27 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -3.13 Total: 2.87 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.46 Total: -56.26 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.18 Total: -13.15 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.31 -8.11 -42.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978652657.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.698 kcal (2) G-P(sol) polarization free energy of solvation -34.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds