Wall clock time and date at job start Fri Apr 10 2020 17:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86792 * 120.00032 * 2 1 4 4 H 1.48501 * 109.47242 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47073 * 299.99565 * 3 2 1 6 6 H 1.48493 * 109.47516 * 59.99868 * 3 2 1 7 7 C 1.38815 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99959 * 170.57212 * 7 2 1 9 9 N 1.36940 * 119.99892 * 350.56612 * 7 2 1 10 10 C 1.48147 * 127.83703 * 164.33524 * 9 7 2 11 11 C 1.57686 * 104.67499 * 139.77837 * 10 9 7 12 12 H 1.09008 * 120.32456 * 244.64405 * 11 10 9 13 13 C 1.53000 * 116.11168 * 87.31066 * 11 10 9 14 14 H 1.08999 * 117.40586 * 16.95332 * 13 11 10 15 15 C 1.53005 * 117.44275 * 161.64019 * 13 11 10 16 16 N 1.46495 * 109.46829 * 244.24168 * 15 13 11 17 17 C 1.34780 * 120.00100 * 180.02562 * 16 15 13 18 18 O 1.21603 * 119.99622 * 359.97438 * 17 16 15 19 19 C 1.47564 * 120.00369 * 179.97438 * 17 16 15 20 20 C 1.38050 * 119.73031 * 179.97438 * 19 17 16 21 21 N 1.34872 * 119.95322 * 180.02562 * 20 19 17 22 22 H 0.96997 * 120.31117 * 180.24864 * 21 20 19 23 23 C 1.34956 * 119.38494 * 359.97438 * 21 20 19 24 24 O 1.21860 * 120.27549 * 180.02562 * 23 21 20 25 25 C 1.41789 * 119.45625 * 359.97438 * 23 21 20 26 26 N 1.30609 * 120.03475 * 0.03006 * 25 23 21 27 27 C 1.53001 * 60.55398 * 269.28475 * 13 11 10 28 28 H 1.09005 * 119.54496 * 248.22540 * 27 13 11 29 29 C 1.48146 * 127.84133 * 344.34152 * 9 7 2 30 30 H 0.97002 * 119.99647 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.41170 * 259.20811 * 10 9 7 32 32 H 1.09000 * 110.40519 * 21.51382 * 10 9 7 33 33 H 1.09000 * 109.47150 * 124.23893 * 15 13 11 34 34 H 1.09005 * 109.46657 * 4.23664 * 15 13 11 35 35 H 0.97003 * 120.00575 * 359.97438 * 16 15 13 36 36 H 1.08002 * 120.02351 * 0.02626 * 20 19 17 37 37 H 1.07997 * 119.98629 * 180.02562 * 25 23 21 38 38 H 1.08999 * 110.40655 * 100.80012 * 29 9 7 39 39 H 1.08998 * 110.40393 * 338.36474 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0793 -1.2086 -0.1527 9 7 1.3394 -2.3800 0.1955 10 6 1.8183 -3.7548 -0.0789 11 6 1.2958 -4.6102 1.1384 12 1 2.0011 -5.0726 1.8291 13 6 -0.1132 -5.1898 0.9987 14 1 -0.5441 -5.2255 -0.0019 15 6 -0.4935 -6.3492 1.9218 16 7 -0.7429 -7.5498 1.1203 17 6 -1.0956 -8.7020 1.7242 18 8 -1.2063 -8.7450 2.9344 19 6 -1.3474 -9.9113 0.9169 20 6 -1.7078 -11.0885 1.5413 21 7 -1.9385 -12.1966 0.8079 22 1 -2.1955 -13.0256 1.2410 23 6 -1.8139 -12.1399 -0.5347 24 8 -2.0189 -13.1311 -1.2132 25 6 -1.4434 -10.9171 -1.1495 26 7 -1.2251 -9.8574 -0.4180 27 6 0.0734 -3.8121 1.6374 28 1 -0.1320 -3.6798 2.6997 29 6 -0.0300 -2.5685 0.7284 30 1 -0.4850 0.8401 -0.0004 31 1 1.4043 -4.1212 -1.0183 32 1 2.9076 -3.7787 -0.1097 33 1 -1.3942 -6.0902 2.4783 34 1 0.3220 -6.5409 2.6192 35 1 -0.6550 -7.5155 0.1549 36 1 -1.8050 -11.1222 2.6165 37 1 -1.3416 -10.8619 -2.2233 38 1 -0.7328 -2.7496 -0.0849 39 1 -0.3351 -1.6977 1.3087 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978652657.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:00 Heat of formation + Delta-G solvation = 10.291941 kcal Electronic energy + Delta-G solvation = -23345.517371 eV Core-core repulsion = 19675.615308 eV Total energy + Delta-G solvation = -3669.902063 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.84704 -40.81250 -40.06072 -38.58365 -36.50200 -36.17881 -34.90432 -32.72948 -31.64658 -28.96706 -28.61656 -26.86004 -26.48138 -25.20502 -22.96966 -22.30239 -21.61698 -20.83892 -20.04020 -19.51941 -18.79820 -18.24486 -17.26717 -17.18350 -16.89489 -16.71529 -16.24246 -15.98808 -15.71417 -15.32611 -15.15301 -14.69789 -14.54850 -14.39489 -14.20276 -13.59213 -13.32475 -13.16479 -12.89441 -12.84382 -12.73939 -12.71730 -12.25431 -11.92555 -11.85123 -11.74295 -11.42814 -10.92820 -10.68213 -10.63547 -10.50152 -10.05417 -9.41200 -8.88879 -7.90876 -5.26663 -0.57009 0.05736 1.42066 1.47402 1.48041 1.58981 1.72435 2.11312 2.48718 2.60887 2.78775 3.01869 3.11234 3.27759 3.62537 3.69235 3.74646 3.87817 3.91077 4.20763 4.25156 4.31687 4.36815 4.60315 4.68692 4.76647 4.84659 4.95591 5.04790 5.16792 5.24266 5.26589 5.37769 5.46702 5.48552 5.56116 5.69069 6.19647 6.29684 6.49368 6.64649 7.02723 7.15750 7.69957 8.48507 9.23195 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.036696 B = 0.002274 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.845608 B =12310.513891 C =12709.388980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.064 4.064 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.080 0.920 9 N -0.621 5.621 10 C 0.147 3.853 11 C -0.158 4.158 12 H 0.132 0.868 13 C -0.116 4.116 14 H 0.105 0.895 15 C 0.164 3.836 16 N -0.701 5.701 17 C 0.588 3.412 18 O -0.574 6.574 19 C -0.102 4.102 20 C 0.209 3.791 21 N -0.569 5.569 22 H 0.442 0.558 23 C 0.478 3.522 24 O -0.556 6.556 25 C 0.039 3.961 26 N -0.381 5.381 27 C -0.176 4.176 28 H 0.115 0.885 29 C 0.188 3.812 30 H 0.249 0.751 31 H 0.029 0.971 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.417 0.583 36 H 0.220 0.780 37 H 0.211 0.789 38 H 0.001 0.999 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.851 -25.206 3.887 25.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.258 4.258 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.367 4.367 8 H 0.098 0.902 9 N -0.345 5.345 10 C 0.022 3.978 11 C -0.177 4.177 12 H 0.149 0.851 13 C -0.135 4.135 14 H 0.123 0.877 15 C 0.040 3.960 16 N -0.352 5.352 17 C 0.375 3.625 18 O -0.455 6.455 19 C -0.225 4.225 20 C 0.071 3.929 21 N -0.202 5.202 22 H 0.286 0.714 23 C 0.275 3.725 24 O -0.434 6.434 25 C -0.151 4.151 26 N -0.097 5.097 27 C -0.196 4.196 28 H 0.133 0.867 29 C 0.063 3.937 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.254 0.746 36 H 0.237 0.763 37 H 0.227 0.773 38 H 0.019 0.981 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.773 -24.650 4.010 25.258 hybrid contribution -0.116 0.255 -0.074 0.290 sum -3.889 -24.395 3.936 25.015 Atomic orbital electron populations 1.70106 1.06513 1.25637 1.57293 1.25743 0.96512 1.01296 1.02241 0.85001 0.78303 0.79206 0.76740 1.18890 1.21873 1.21772 1.19413 0.91381 0.83696 1.42241 0.90181 1.45478 1.14292 1.01209 1.73513 1.21887 0.97647 0.84224 0.94044 1.24638 0.90445 1.01749 1.00875 0.85066 1.22446 0.98336 0.92441 1.00241 0.87706 1.20753 1.01349 0.81681 0.92176 1.45725 1.68245 1.09096 1.12109 1.17413 0.76336 0.82565 0.86191 1.90806 1.55005 1.85373 1.14276 1.20184 1.17265 0.94930 0.90150 1.23487 0.84739 0.83899 1.00776 1.43588 1.53720 1.14094 1.08752 0.71433 1.18888 0.79800 0.91904 0.81959 1.91009 1.52122 1.38264 1.61955 1.24988 1.01781 0.85661 1.02651 1.67647 1.05530 1.31146 1.05338 1.23861 1.04724 0.91085 0.99929 0.86745 1.20816 0.86000 0.93819 0.93088 0.94150 0.95280 0.92701 0.90756 0.90708 0.74553 0.76345 0.77273 0.98110 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.04 10.88 21.65 0.24 -56.80 16 2 C -0.06 -3.66 5.39 84.86 0.46 -3.20 16 3 Si 0.98 45.51 29.56 68.60 2.03 47.53 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 7 C -0.24 -13.38 10.35 84.03 0.87 -12.51 16 8 H 0.08 4.30 7.85 -2.91 -0.02 4.28 16 9 N -0.62 -31.94 3.38 -681.42 -2.30 -34.24 16 10 C 0.15 5.94 7.09 87.72 0.62 6.57 16 11 C -0.16 -5.06 7.03 -8.70 -0.06 -5.12 16 12 H 0.13 3.65 8.12 -2.38 -0.02 3.63 16 13 C -0.12 -3.22 5.34 -10.79 -0.06 -3.27 16 14 H 0.10 2.98 8.04 -2.39 -0.02 2.96 16 15 C 0.16 3.79 5.95 86.38 0.51 4.30 16 16 N -0.70 -14.48 5.54 -466.22 -2.59 -17.06 16 17 C 0.59 12.07 7.79 86.70 0.68 12.75 16 18 O -0.57 -14.35 16.28 -4.04 -0.07 -14.41 16 19 C -0.10 -1.54 6.71 41.21 0.28 -1.27 16 20 C 0.21 1.68 10.77 84.18 0.91 2.58 16 21 N -0.57 -4.01 5.28 -316.87 -1.67 -5.68 16 22 H 0.44 0.48 8.92 -92.71 -0.83 -0.34 16 23 C 0.48 6.72 7.74 85.09 0.66 7.38 16 24 O -0.56 -11.76 17.95 -4.86 -0.09 -11.85 16 25 C 0.04 0.52 11.23 85.75 0.96 1.48 16 26 N -0.38 -5.94 9.62 -183.48 -1.77 -7.71 16 27 C -0.18 -6.33 6.77 -9.89 -0.07 -6.39 16 28 H 0.11 3.84 8.14 -2.38 -0.02 3.82 16 29 C 0.19 9.17 5.70 86.53 0.49 9.66 16 30 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 1.73 7.94 -2.38 -0.02 1.71 16 35 H 0.42 7.90 7.72 -92.71 -0.72 7.19 16 36 H 0.22 0.57 7.58 -2.91 -0.02 0.55 16 37 H 0.21 1.94 8.06 -2.91 -0.02 1.91 16 38 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 39 H 0.05 2.87 6.53 -2.39 -0.02 2.85 16 Total: -1.00 -75.97 337.46 -0.40 -76.37 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -0.43 Total: 10.90 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 6.25 Total: 12.95 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -8.09 Total: -121.50 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.15 Total: -26.26 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -75.97 -0.40 -76.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978652657.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.662 kcal (2) G-P(sol) polarization free energy of solvation -75.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds