Wall clock time and date at job start Fri Apr 10 2020 17:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86804 * 119.99613 * 2 1 4 4 H 1.48495 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47031 * 299.99992 * 3 2 1 6 6 H 1.48493 * 109.47107 * 60.00266 * 3 2 1 7 7 C 1.38809 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99733 * 164.51471 * 7 2 1 9 9 N 1.36934 * 119.99814 * 344.51267 * 7 2 1 10 10 C 1.47004 * 121.37760 * 335.97601 * 9 7 2 11 11 C 1.50330 * 109.16260 * 222.97150 * 10 9 7 12 12 C 1.29452 * 123.65116 * 349.01076 * 11 10 9 13 13 C 1.50699 * 117.69181 * 180.86081 * 12 11 10 14 14 N 1.46495 * 109.46947 * 95.00964 * 13 12 11 15 15 C 1.34774 * 120.00316 * 180.02562 * 14 13 12 16 16 O 1.21597 * 120.00069 * 359.97438 * 15 14 13 17 17 C 1.47576 * 120.00514 * 179.97438 * 15 14 13 18 18 C 1.38043 * 119.73270 * 179.72424 * 17 15 14 19 19 N 1.34870 * 119.95358 * 179.74562 * 18 17 15 20 20 H 0.96999 * 120.31200 * 180.22936 * 19 18 17 21 21 C 1.34954 * 119.38225 * 0.52509 * 19 18 17 22 22 O 1.21864 * 120.27223 * 179.70098 * 21 19 18 23 23 C 1.41787 * 119.45895 * 359.72504 * 21 19 18 24 24 N 1.30605 * 120.03378 * 0.02562 * 23 21 19 25 25 C 1.49971 * 124.61350 * 1.15086 * 12 11 10 26 26 C 1.47341 * 121.37388 * 155.99580 * 9 7 2 27 27 H 0.96998 * 120.00224 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.52419 * 103.06241 * 10 9 7 29 29 H 1.08998 * 109.52077 * 342.86874 * 10 9 7 30 30 H 1.07999 * 118.17340 * 169.00017 * 11 10 9 31 31 H 1.09004 * 109.47173 * 215.00484 * 13 12 11 32 32 H 1.08998 * 109.47299 * 335.00343 * 13 12 11 33 33 H 0.97005 * 120.00216 * 359.97438 * 14 13 12 34 34 H 1.08002 * 120.02501 * 359.97438 * 18 17 15 35 35 H 1.08005 * 119.98203 * 179.97438 * 23 21 19 36 36 H 1.08998 * 109.31561 * 101.00248 * 25 12 11 37 37 H 1.08991 * 109.31460 * 220.43316 * 25 12 11 38 38 H 1.09000 * 109.77864 * 237.78977 * 26 9 7 39 39 H 1.08999 * 109.77691 * 358.59247 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0609 -1.2189 -0.2503 9 7 1.3630 -2.3666 0.3156 10 6 0.1445 -2.3660 1.1381 11 6 0.2249 -3.4839 2.1399 12 6 1.1205 -4.4178 2.1024 13 6 1.0641 -5.4853 3.1646 14 7 0.3204 -6.6407 2.6566 15 6 0.1410 -7.7236 3.4387 16 8 0.5968 -7.7417 4.5659 17 6 -0.6087 -8.8873 2.9272 18 6 -0.7842 -9.9957 3.7311 19 7 -1.4730 -11.0597 3.2700 20 1 -1.6023 -11.8399 3.8316 21 6 -1.9754 -11.0311 2.0178 22 8 -2.5957 -11.9856 1.5828 23 6 -1.7754 -9.8816 1.2123 24 7 -1.1091 -8.8615 1.6827 25 6 2.2140 -4.5088 1.0801 26 6 1.8591 -3.6720 -0.1542 27 1 -0.4850 0.8400 0.0004 28 1 -0.7264 -2.5114 0.4990 29 1 0.0587 -1.4136 1.6612 30 1 -0.5052 -3.5092 2.9354 31 1 2.0771 -5.7916 3.4260 32 1 0.5639 -5.0915 4.0493 33 1 -0.0435 -6.6262 1.7575 34 1 -0.3735 -10.0095 4.7298 35 1 -2.1735 -9.8498 0.2088 36 1 3.1443 -4.1418 1.5136 37 1 2.3439 -5.5493 0.7828 38 1 1.0848 -4.1738 -0.7345 39 1 2.7476 -3.5292 -0.7692 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001099164.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:02 Heat of formation + Delta-G solvation = -10.423843 kcal Electronic energy + Delta-G solvation = -23742.953922 eV Core-core repulsion = 20072.153554 eV Total energy + Delta-G solvation = -3670.800367 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.85359 -40.72228 -39.35127 -38.55965 -36.53348 -36.21738 -34.46431 -32.65459 -31.63095 -31.32597 -28.59905 -26.56739 -26.26326 -25.10610 -24.32761 -22.96037 -22.27866 -20.38267 -19.52872 -19.44548 -18.41148 -17.51556 -17.21313 -17.13453 -16.89623 -16.82974 -16.17909 -15.85338 -15.67108 -15.40533 -15.22173 -15.03846 -14.57393 -14.40587 -13.93674 -13.79197 -13.45536 -13.23907 -12.91305 -12.86926 -12.79741 -12.72926 -12.58947 -12.18157 -12.06454 -11.68311 -11.42709 -11.20854 -10.67889 -10.59389 -10.11854 -9.62597 -9.41916 -8.73068 -7.86609 -5.27824 -0.57615 0.05313 1.17842 1.47074 1.47926 1.49660 1.59766 1.72187 2.36924 2.52699 2.60742 3.03207 3.11933 3.30494 3.65118 3.68646 3.87292 3.91140 4.01550 4.22858 4.48319 4.57176 4.65673 4.76378 4.83046 4.88137 4.95520 5.13331 5.16554 5.24399 5.25648 5.37749 5.44177 5.51338 5.63607 5.79871 6.20238 6.30313 6.35843 6.49285 6.65037 7.15014 7.15567 7.85527 8.39354 9.22042 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.031331 B = 0.002611 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.482042 B =10721.129161 C =11112.233862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.055 4.055 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.254 4.254 8 H 0.071 0.929 9 N -0.616 5.616 10 C 0.205 3.795 11 C -0.142 4.142 12 C -0.140 4.140 13 C 0.167 3.833 14 N -0.699 5.699 15 C 0.587 3.413 16 O -0.574 6.574 17 C -0.102 4.102 18 C 0.210 3.790 19 N -0.568 5.568 20 H 0.443 0.557 21 C 0.479 3.521 22 O -0.555 6.555 23 C 0.038 3.962 24 N -0.383 5.383 25 C -0.084 4.084 26 C 0.138 3.862 27 H 0.249 0.751 28 H 0.012 0.988 29 H 0.057 0.943 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.415 0.585 34 H 0.221 0.779 35 H 0.210 0.790 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.026 0.974 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.334 -22.286 8.419 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.250 4.250 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.385 4.385 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.080 3.920 11 C -0.162 4.162 12 C -0.141 4.141 13 C 0.044 3.956 14 N -0.349 5.349 15 C 0.374 3.626 16 O -0.455 6.455 17 C -0.226 4.226 18 C 0.072 3.928 19 N -0.201 5.201 20 H 0.286 0.714 21 C 0.275 3.725 22 O -0.433 6.433 23 C -0.152 4.152 24 N -0.098 5.098 25 C -0.122 4.122 26 C 0.013 3.987 27 H 0.058 0.942 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.131 0.869 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.251 0.749 34 H 0.237 0.763 35 H 0.226 0.774 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.045 0.955 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.232 -21.880 8.503 23.507 hybrid contribution -0.290 0.344 0.099 0.461 sum -1.523 -21.537 8.602 23.241 Atomic orbital electron populations 1.70179 1.06495 1.25676 1.56314 1.25741 0.96172 1.01324 1.01768 0.85196 0.78573 0.79951 0.76683 1.19122 1.22011 1.21826 1.19549 0.92555 0.85583 1.40765 0.91163 1.44427 1.29409 1.02168 1.57952 1.19398 0.87637 0.95007 0.89970 1.22951 0.98125 0.96219 0.98948 1.20623 0.98278 0.96566 0.98619 1.20318 0.96839 0.83910 0.94499 1.45861 1.55106 1.15171 1.18778 1.17457 0.78849 0.81975 0.84310 1.90793 1.52612 1.82359 1.19733 1.20206 1.12099 0.97318 0.92936 1.23480 0.85038 0.83712 1.00586 1.43575 1.42553 1.18174 1.15791 0.71390 1.18856 0.80791 0.90539 0.82287 1.91008 1.42074 1.38312 1.71910 1.24982 1.00277 0.87352 1.02546 1.67656 1.02594 1.27824 1.11748 1.20715 0.96375 1.00217 0.94924 1.21180 0.97302 0.85802 0.94443 0.94163 0.96991 0.92492 0.86862 0.90574 0.91339 0.74854 0.76261 0.77395 0.91585 0.89553 0.95548 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.34 11.08 21.65 0.24 -55.10 16 2 C -0.06 -3.09 5.01 84.86 0.43 -2.66 16 3 Si 0.97 44.88 29.58 68.60 2.03 46.91 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 7 C -0.25 -13.92 9.71 84.03 0.82 -13.11 16 8 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 9 N -0.62 -30.63 3.01 -703.04 -2.11 -32.74 16 10 C 0.20 9.83 5.23 85.42 0.45 10.28 16 11 C -0.14 -5.21 9.47 27.11 0.26 -4.96 16 12 C -0.14 -4.41 5.22 -15.14 -0.08 -4.49 16 13 C 0.17 4.35 5.66 85.63 0.48 4.83 16 14 N -0.70 -16.37 5.54 -469.96 -2.60 -18.98 16 15 C 0.59 13.16 7.79 86.71 0.68 13.83 16 16 O -0.57 -15.17 16.28 -4.02 -0.07 -15.24 16 17 C -0.10 -1.72 6.71 41.21 0.28 -1.44 16 18 C 0.21 1.94 10.77 84.18 0.91 2.84 16 19 N -0.57 -4.61 5.28 -316.88 -1.67 -6.28 16 20 H 0.44 0.86 8.92 -92.71 -0.83 0.03 16 21 C 0.48 7.34 7.74 85.09 0.66 7.99 16 22 O -0.56 -12.35 17.95 -4.87 -0.09 -12.44 16 23 C 0.04 0.58 11.23 85.75 0.96 1.54 16 24 N -0.38 -6.77 9.62 -183.47 -1.77 -8.53 16 25 C -0.08 -2.65 5.95 29.72 0.18 -2.47 16 26 C 0.14 5.47 6.59 86.31 0.57 6.04 16 27 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 28 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 3.10 6.41 -2.39 -0.02 3.09 16 30 H 0.11 3.69 7.73 -2.91 -0.02 3.67 16 31 H 0.08 1.92 8.11 -2.38 -0.02 1.91 16 32 H 0.07 1.82 7.78 -2.39 -0.02 1.80 16 33 H 0.41 9.51 7.78 -92.70 -0.72 8.79 16 34 H 0.22 0.79 7.58 -2.91 -0.02 0.77 16 35 H 0.21 2.34 8.06 -2.91 -0.02 2.31 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 2.27 7.96 -2.39 -0.02 2.26 16 Total: -1.00 -73.26 335.82 0.10 -73.16 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -0.44 Total: 11.00 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 6.58 Total: 18.23 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -7.91 Total: -121.63 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.15 Total: -27.68 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -73.26 0.10 -73.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001099164.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.740 kcal (2) G-P(sol) polarization free energy of solvation -73.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds