Wall clock time and date at job start Fri Apr 10 2020 17:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99632 * 2 1 4 4 H 1.48507 * 109.47273 * 264.99742 * 3 2 1 5 5 H 1.48492 * 109.47402 * 24.99971 * 3 2 1 6 6 H 1.48510 * 109.47058 * 145.00264 * 3 2 1 7 7 C 1.38809 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00095 * 185.11344 * 7 2 1 9 9 N 1.36935 * 120.00059 * 5.10424 * 7 2 1 10 10 C 1.47025 * 125.64474 * 5.05122 * 9 7 2 11 11 C 1.54326 * 107.27194 * 178.98328 * 10 9 7 12 12 C 1.55160 * 102.94057 * 337.80510 * 11 10 9 13 13 H 1.09005 * 111.00550 * 153.61680 * 12 11 10 14 14 N 1.46505 * 111.00473 * 277.42649 * 12 11 10 15 15 C 1.34772 * 119.99863 * 204.99648 * 14 12 11 16 16 O 1.21532 * 120.00230 * 0.02562 * 15 14 12 17 17 C 1.47982 * 119.99736 * 180.27701 * 15 14 12 18 18 C 1.39844 * 120.59467 * 54.74263 * 17 15 14 19 19 C 1.38464 * 118.34850 * 179.71259 * 18 17 15 20 20 C 1.38587 * 119.45836 * 0.61150 * 19 18 17 21 21 N 1.31644 * 121.18384 * 359.64726 * 20 19 18 22 22 C 1.32472 * 121.79101 * 0.02947 * 21 20 19 23 23 C 1.48307 * 119.79359 * 179.97438 * 22 21 20 24 24 N 1.34778 * 120.00255 * 5.81410 * 23 22 21 25 25 O 1.21496 * 119.99921 * 185.81463 * 23 22 21 26 26 C 1.47421 * 125.65258 * 185.09360 * 9 7 2 27 27 H 0.96998 * 120.00275 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.88709 * 59.56393 * 10 9 7 29 29 H 1.08996 * 109.88168 * 298.39904 * 10 9 7 30 30 H 1.08995 * 110.72314 * 219.44687 * 11 10 9 31 31 H 1.08998 * 110.72348 * 96.16621 * 11 10 9 32 32 H 0.97000 * 119.99640 * 25.00388 * 14 12 11 33 33 H 1.07996 * 120.82529 * 359.97438 * 18 17 15 34 34 H 1.08004 * 120.27270 * 180.28137 * 19 18 17 35 35 H 1.08003 * 119.41106 * 179.67548 * 20 19 18 36 36 H 0.97004 * 119.99757 * 0.02562 * 24 23 22 37 37 H 0.96994 * 119.99799 * 180.02562 * 24 23 22 38 38 H 1.09013 * 110.36244 * 85.24762 * 26 9 7 39 39 H 1.08998 * 110.37279 * 322.93017 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6033 1.9855 -1.3948 5 1 1.3987 2.6809 0.5916 6 1 3.4909 1.4731 0.8031 7 6 2.0103 -1.2021 -0.0005 8 1 3.0871 -1.2039 0.0828 9 7 1.3298 -2.3856 -0.1066 10 6 -0.1166 -2.5252 -0.3304 11 6 -0.4250 -4.0355 -0.4055 12 6 0.9475 -4.6519 -0.7850 13 1 1.0230 -5.6819 -0.4365 14 7 1.1779 -4.5712 -2.2296 15 6 2.0083 -5.4470 -2.8294 16 8 2.5655 -6.3040 -2.1721 17 6 2.2458 -5.3616 -4.2875 18 6 2.6861 -4.1681 -4.8683 19 6 2.8993 -4.1419 -6.2361 20 6 2.6607 -5.2833 -6.9851 21 7 2.2411 -6.3950 -6.4184 22 6 2.0276 -6.4758 -5.1135 23 6 1.5544 -7.7506 -4.5217 24 7 1.4548 -8.8540 -5.2893 25 8 1.2563 -7.8004 -3.3450 26 6 1.9259 -3.7308 -0.0144 27 1 -0.4850 0.8400 0.0004 28 1 -0.3951 -2.0430 -1.2674 29 1 -0.6649 -2.0757 0.4975 30 1 -1.1662 -4.2398 -1.1780 31 1 -0.7612 -4.4091 0.5616 32 1 0.7330 -3.8873 -2.7542 33 1 2.8596 -3.2898 -4.2643 34 1 3.2437 -3.2379 -6.7163 35 1 2.8222 -5.2605 -8.0527 36 1 1.6931 -8.8143 -6.2288 37 1 1.1449 -9.6876 -4.9023 38 1 1.9993 -4.0425 1.0276 39 1 2.9089 -3.7433 -0.4850 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016322478.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:11 Heat of formation + Delta-G solvation = -1.224257 kcal Electronic energy + Delta-G solvation = -24919.594073 eV Core-core repulsion = 21249.192629 eV Total energy + Delta-G solvation = -3670.401443 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.03384 -39.03650 -38.77579 -37.05740 -33.94573 -33.68136 -32.75402 -31.88070 -31.36802 -29.13113 -27.29510 -25.30612 -24.62950 -24.18013 -21.43092 -20.86658 -20.05719 -19.70219 -18.41953 -17.58267 -17.34215 -16.73237 -16.36697 -15.85178 -15.37989 -15.11454 -14.67673 -14.58011 -14.11609 -13.86749 -13.77019 -13.50316 -13.40548 -13.21590 -12.64570 -12.29497 -11.89606 -11.79313 -10.94451 -10.91081 -10.69001 -10.59073 -10.36128 -10.20452 -10.13697 -9.92993 -9.90399 -9.74744 -9.64822 -9.52740 -9.35554 -8.70743 -8.44864 -6.80664 -5.71533 -3.05461 0.28809 0.77445 2.60815 3.03184 3.20169 3.37747 3.40208 3.43912 3.45609 3.67046 3.97605 4.49384 4.54362 4.66727 4.69260 4.74296 5.15075 5.21939 5.39911 5.47349 5.53983 5.71257 5.73993 5.83244 5.91153 6.16930 6.27223 6.43612 6.55621 6.58022 6.65109 6.72867 7.11139 7.11918 7.42678 7.47014 7.63489 7.79937 7.92616 8.15288 8.25632 8.61878 9.21506 9.82041 10.48927 11.39412 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.018723 B = 0.004133 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.153283 B = 6773.879156 C = 7762.590783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.225 4.225 8 H 0.076 0.924 9 N -0.603 5.603 10 C 0.174 3.826 11 C -0.153 4.153 12 C 0.131 3.869 13 H 0.093 0.907 14 N -0.697 5.697 15 C 0.565 3.435 16 O -0.508 6.508 17 C -0.113 4.113 18 C -0.050 4.050 19 C -0.148 4.148 20 C 0.106 3.894 21 N -0.462 5.462 22 C 0.113 3.887 23 C 0.565 3.435 24 N -0.840 5.840 25 O -0.495 6.495 26 C 0.125 3.875 27 H 0.252 0.748 28 H 0.032 0.968 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.400 0.600 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.167 0.833 36 H 0.408 0.592 37 H 0.404 0.596 38 H 0.029 0.971 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.044 -12.080 -15.883 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.354 4.354 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.049 3.951 11 C -0.191 4.191 12 C 0.026 3.974 13 H 0.111 0.889 14 N -0.347 5.347 15 C 0.348 3.652 16 O -0.383 6.383 17 C -0.120 4.120 18 C -0.076 4.076 19 C -0.168 4.168 20 C -0.053 4.053 21 N -0.174 5.174 22 C -0.027 4.027 23 C 0.347 3.653 24 N -0.405 5.405 25 O -0.366 6.366 26 C -0.002 4.002 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.234 0.766 33 H 0.172 0.828 34 H 0.166 0.834 35 H 0.184 0.816 36 H 0.238 0.762 37 H 0.236 0.764 38 H 0.046 0.954 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.077 -13.083 -15.043 20.045 hybrid contribution 0.434 1.846 -0.241 1.912 sum 2.511 -11.237 -15.284 19.136 Atomic orbital electron populations 1.69951 1.04835 1.24969 1.57189 1.24778 0.95663 0.97560 1.02449 0.86163 0.78616 0.83568 0.77563 1.21701 1.21732 1.20787 1.19044 0.90609 0.82531 1.43174 0.90608 1.44492 1.03600 0.99881 1.85049 1.21194 0.85194 0.88174 1.00555 1.23207 0.95186 0.99792 1.00963 1.22144 0.96509 0.99654 0.79084 0.88904 1.45673 1.46547 1.33141 1.09355 1.17680 0.80358 0.81594 0.85582 1.90787 1.48467 1.34457 1.64605 1.21066 1.00704 0.94297 0.95912 1.21954 0.93434 0.96896 0.95345 1.22378 0.99583 1.00528 0.94334 1.22910 0.93889 0.87741 1.00748 1.67540 1.11262 1.28107 1.10477 1.21131 0.98467 0.93755 0.89336 1.17856 0.78305 0.83332 0.85812 1.43563 1.70276 1.11994 1.14634 1.90998 1.46895 1.84235 1.14497 1.21956 0.95419 0.86359 0.96492 0.93814 0.94954 0.92498 0.91680 0.90827 0.76617 0.82810 0.83380 0.81585 0.76242 0.76444 0.95384 0.94030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.49 10.40 55.49 0.58 -25.92 16 2 C -0.01 -0.23 5.46 -17.43 -0.10 -0.33 16 3 Si 0.91 21.78 29.56 -169.99 -5.02 16.75 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.23 -6.19 10.27 -15.06 -0.15 -6.35 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -15.15 3.39 -170.07 -0.58 -15.73 16 10 C 0.17 4.07 5.39 -3.06 -0.02 4.06 16 11 C -0.15 -2.84 6.55 -24.89 -0.16 -3.00 16 12 C 0.13 2.50 3.43 -65.78 -0.23 2.28 16 13 H 0.09 1.80 7.54 -51.93 -0.39 1.41 16 14 N -0.70 -12.31 5.17 -52.62 -0.27 -12.58 16 15 C 0.56 10.22 5.91 -12.27 -0.07 10.15 16 16 O -0.51 -10.95 14.38 -18.68 -0.27 -11.22 16 17 C -0.11 -1.66 5.68 -104.49 -0.59 -2.26 16 18 C -0.05 -0.58 9.91 -38.90 -0.39 -0.97 16 19 C -0.15 -1.26 10.10 -39.37 -0.40 -1.66 16 20 C 0.11 0.88 11.17 -17.50 -0.20 0.68 16 21 N -0.46 -5.01 9.55 -9.51 -0.09 -5.10 16 22 C 0.11 1.55 6.78 -82.64 -0.56 0.99 16 23 C 0.57 8.18 8.00 -12.12 -0.10 8.09 16 24 N -0.84 -8.08 8.86 30.64 0.27 -7.81 16 25 O -0.49 -9.23 13.80 -18.65 -0.26 -9.49 16 26 C 0.12 2.72 6.93 -2.53 -0.02 2.70 16 27 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.03 0.81 7.80 -51.93 -0.40 0.41 16 29 H 0.06 1.51 7.11 -51.93 -0.37 1.14 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.40 6.60 8.65 -40.82 -0.35 6.25 16 33 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.17 0.75 8.06 -52.48 -0.42 0.33 16 36 H 0.41 3.03 8.18 -40.82 -0.33 2.69 16 37 H 0.40 3.18 8.93 -40.82 -0.36 2.82 16 38 H 0.03 0.62 8.14 -51.92 -0.42 0.19 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 333.11 15.07 5.02 5.02 Total: -1.00 -35.39 333.11 -8.32 -43.70 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -4.72 Total: 7.98 kcal Atomic # 6 Polarization: 17.36 SS G_CDS: -2.97 Total: 14.38 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: -0.09 Total: -67.14 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.53 Total: -20.71 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.39 -8.32 -43.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016322478.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.480 kcal (2) G-P(sol) polarization free energy of solvation -35.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds