Wall clock time and date at job start Fri Apr 10 2020 17:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99632 * 2 1 4 4 H 1.48507 * 109.47273 * 264.99742 * 3 2 1 5 5 H 1.48492 * 109.47402 * 24.99971 * 3 2 1 6 6 H 1.48510 * 109.47058 * 145.00264 * 3 2 1 7 7 C 1.38809 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00095 * 185.11344 * 7 2 1 9 9 N 1.36935 * 120.00059 * 5.10424 * 7 2 1 10 10 C 1.47025 * 125.64474 * 5.05122 * 9 7 2 11 11 C 1.54326 * 107.27194 * 178.98328 * 10 9 7 12 12 C 1.55160 * 102.94057 * 337.80510 * 11 10 9 13 13 H 1.09005 * 111.00550 * 153.61680 * 12 11 10 14 14 N 1.46505 * 111.00473 * 277.42649 * 12 11 10 15 15 C 1.34772 * 119.99863 * 204.99648 * 14 12 11 16 16 O 1.21532 * 120.00230 * 0.02562 * 15 14 12 17 17 C 1.47982 * 119.99736 * 180.27701 * 15 14 12 18 18 C 1.39844 * 120.59467 * 54.74263 * 17 15 14 19 19 C 1.38464 * 118.34850 * 179.71259 * 18 17 15 20 20 C 1.38587 * 119.45836 * 0.61150 * 19 18 17 21 21 N 1.31644 * 121.18384 * 359.64726 * 20 19 18 22 22 C 1.32472 * 121.79101 * 0.02947 * 21 20 19 23 23 C 1.48307 * 119.79359 * 179.97438 * 22 21 20 24 24 N 1.34778 * 120.00255 * 5.81410 * 23 22 21 25 25 O 1.21496 * 119.99921 * 185.81463 * 23 22 21 26 26 C 1.47421 * 125.65258 * 185.09360 * 9 7 2 27 27 H 0.96998 * 120.00275 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.88709 * 59.56393 * 10 9 7 29 29 H 1.08996 * 109.88168 * 298.39904 * 10 9 7 30 30 H 1.08995 * 110.72314 * 219.44687 * 11 10 9 31 31 H 1.08998 * 110.72348 * 96.16621 * 11 10 9 32 32 H 0.97000 * 119.99640 * 25.00388 * 14 12 11 33 33 H 1.07996 * 120.82529 * 359.97438 * 18 17 15 34 34 H 1.08004 * 120.27270 * 180.28137 * 19 18 17 35 35 H 1.08003 * 119.41106 * 179.67548 * 20 19 18 36 36 H 0.97004 * 119.99757 * 0.02562 * 24 23 22 37 37 H 0.96994 * 119.99799 * 180.02562 * 24 23 22 38 38 H 1.09013 * 110.36244 * 85.24762 * 26 9 7 39 39 H 1.08998 * 110.37279 * 322.93017 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6033 1.9855 -1.3948 5 1 1.3987 2.6809 0.5916 6 1 3.4909 1.4731 0.8031 7 6 2.0103 -1.2021 -0.0005 8 1 3.0871 -1.2039 0.0828 9 7 1.3298 -2.3856 -0.1066 10 6 -0.1166 -2.5252 -0.3304 11 6 -0.4250 -4.0355 -0.4055 12 6 0.9475 -4.6519 -0.7850 13 1 1.0230 -5.6819 -0.4365 14 7 1.1779 -4.5712 -2.2296 15 6 2.0083 -5.4470 -2.8294 16 8 2.5655 -6.3040 -2.1721 17 6 2.2458 -5.3616 -4.2875 18 6 2.6861 -4.1681 -4.8683 19 6 2.8993 -4.1419 -6.2361 20 6 2.6607 -5.2833 -6.9851 21 7 2.2411 -6.3950 -6.4184 22 6 2.0276 -6.4758 -5.1135 23 6 1.5544 -7.7506 -4.5217 24 7 1.4548 -8.8540 -5.2893 25 8 1.2563 -7.8004 -3.3450 26 6 1.9259 -3.7308 -0.0144 27 1 -0.4850 0.8400 0.0004 28 1 -0.3951 -2.0430 -1.2674 29 1 -0.6649 -2.0757 0.4975 30 1 -1.1662 -4.2398 -1.1780 31 1 -0.7612 -4.4091 0.5616 32 1 0.7330 -3.8873 -2.7542 33 1 2.8596 -3.2898 -4.2643 34 1 3.2437 -3.2379 -6.7163 35 1 2.8222 -5.2605 -8.0527 36 1 1.6931 -8.8143 -6.2288 37 1 1.1449 -9.6876 -4.9023 38 1 1.9993 -4.0425 1.0276 39 1 2.9089 -3.7433 -0.4850 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016322478.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:10 Heat of formation + Delta-G solvation = -28.912234 kcal Electronic energy + Delta-G solvation = -24920.794713 eV Core-core repulsion = 21249.192629 eV Total energy + Delta-G solvation = -3671.602084 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.03927 -40.44662 -39.78194 -38.72744 -35.40443 -34.92334 -33.97898 -33.20431 -32.51121 -30.96557 -29.03227 -26.68375 -25.99508 -25.35211 -22.65287 -22.02749 -21.85174 -21.26982 -19.44166 -18.99010 -18.45044 -18.28102 -17.51064 -17.09154 -16.65032 -16.31543 -16.14810 -15.82669 -15.70311 -15.37645 -15.14070 -14.81122 -14.50541 -14.27562 -13.93169 -13.85199 -13.59622 -13.52948 -12.87387 -12.78593 -12.31701 -12.14860 -12.03659 -11.81403 -11.64495 -11.58868 -11.12118 -11.01444 -10.73409 -10.70418 -10.66110 -10.29860 -10.03345 -8.85895 -7.82888 -5.19377 -0.62405 -0.07215 1.47579 1.49245 1.57715 1.64714 1.75084 2.12239 2.27899 2.50659 2.73579 3.16697 3.34718 3.57435 3.66127 3.76849 3.83015 3.84018 3.91255 4.07743 4.29262 4.38670 4.41335 4.64044 4.73207 4.86124 4.88666 4.96908 4.99706 5.01406 5.43685 5.44200 5.55311 5.66829 5.76259 5.81851 6.20303 6.26016 6.51894 6.62802 7.11605 7.19880 7.28976 7.76991 8.42877 9.26337 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.018723 B = 0.004133 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.153283 B = 6773.879156 C = 7762.590783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.058 4.058 3 Si 0.976 3.024 4 H -0.281 1.281 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.243 4.243 8 H 0.075 0.925 9 N -0.618 5.618 10 C 0.184 3.816 11 C -0.134 4.134 12 C 0.143 3.857 13 H 0.093 0.907 14 N -0.695 5.695 15 C 0.565 3.435 16 O -0.550 6.550 17 C -0.141 4.141 18 C -0.059 4.059 19 C -0.128 4.128 20 C 0.117 3.883 21 N -0.460 5.460 22 C 0.098 3.902 23 C 0.556 3.444 24 N -0.814 5.814 25 O -0.548 6.548 26 C 0.126 3.874 27 H 0.248 0.752 28 H 0.012 0.988 29 H 0.023 0.977 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.405 0.595 33 H 0.150 0.850 34 H 0.189 0.811 35 H 0.216 0.784 36 H 0.421 0.579 37 H 0.414 0.586 38 H 0.029 0.971 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.786 -11.842 -18.886 22.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.251 4.251 3 Si 0.805 3.195 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.372 4.372 8 H 0.093 0.907 9 N -0.344 5.344 10 C 0.060 3.940 11 C -0.173 4.173 12 C 0.037 3.963 13 H 0.111 0.889 14 N -0.345 5.345 15 C 0.350 3.650 16 O -0.428 6.428 17 C -0.148 4.148 18 C -0.085 4.085 19 C -0.147 4.147 20 C -0.042 4.042 21 N -0.171 5.171 22 C -0.041 4.041 23 C 0.338 3.662 24 N -0.380 5.380 25 O -0.425 6.425 26 C -0.001 4.001 27 H 0.057 0.943 28 H 0.030 0.970 29 H 0.041 0.959 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.240 0.760 33 H 0.168 0.832 34 H 0.206 0.794 35 H 0.232 0.768 36 H 0.253 0.747 37 H 0.246 0.754 38 H 0.047 0.953 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.826 -12.888 -18.106 22.403 hybrid contribution 0.259 1.766 0.562 1.871 sum 3.085 -11.122 -17.543 21.000 Atomic orbital electron populations 1.70155 1.06113 1.25316 1.57922 1.25556 0.96528 1.00629 1.02415 0.85134 0.77390 0.79212 0.77786 1.20736 1.22144 1.20080 1.19352 0.90939 0.83773 1.43104 0.90721 1.44698 1.04404 1.00439 1.84901 1.20955 0.84087 0.91001 0.97992 1.23069 0.95483 0.95995 1.02704 1.21904 0.95699 0.98754 0.79912 0.88946 1.45636 1.46721 1.33432 1.08699 1.18221 0.79144 0.80435 0.87164 1.90744 1.49959 1.35956 1.66105 1.20855 1.03798 0.96288 0.93836 1.22052 0.93787 0.95655 0.97052 1.22830 0.97176 1.02110 0.92621 1.23794 0.91102 0.86514 1.02775 1.67625 1.11439 1.29380 1.08689 1.21011 0.99652 0.93053 0.90413 1.18184 0.77903 0.84595 0.85483 1.43384 1.68431 1.11234 1.14903 1.90965 1.49635 1.85164 1.16696 1.22011 0.95549 0.85668 0.96868 0.94313 0.97023 0.95881 0.89337 0.89295 0.75994 0.83188 0.79389 0.76778 0.74685 0.75385 0.95336 0.95052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.43 10.40 21.65 0.23 -55.20 16 2 C -0.06 -3.23 5.46 84.86 0.46 -2.76 16 3 Si 0.98 44.93 29.56 68.60 2.03 46.95 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.24 -13.57 10.27 84.03 0.86 -12.70 16 8 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.62 -31.73 3.39 -691.98 -2.35 -34.08 16 10 C 0.18 8.87 5.39 86.73 0.47 9.33 16 11 C -0.13 -4.97 6.55 31.78 0.21 -4.76 16 12 C 0.14 5.54 3.43 46.38 0.16 5.70 16 13 H 0.09 3.66 7.54 -2.38 -0.02 3.64 16 14 N -0.69 -25.05 5.17 -438.69 -2.27 -27.32 16 15 C 0.56 21.04 5.91 86.83 0.51 21.55 16 16 O -0.55 -24.70 14.38 19.15 0.28 -24.42 16 17 C -0.14 -4.12 5.68 -19.78 -0.11 -4.23 16 18 C -0.06 -1.29 9.91 22.71 0.23 -1.07 16 19 C -0.13 -1.65 10.10 22.41 0.23 -1.42 16 20 C 0.12 1.40 11.17 84.80 0.95 2.35 16 21 N -0.46 -8.64 9.55 -183.99 -1.76 -10.40 16 22 C 0.10 2.59 6.78 42.25 0.29 2.88 16 23 C 0.56 16.13 8.00 86.92 0.69 16.83 16 24 N -0.81 -14.87 8.86 -175.29 -1.55 -16.43 16 25 O -0.55 -21.20 13.80 19.26 0.27 -20.94 16 26 C 0.13 5.60 6.93 86.86 0.60 6.21 16 27 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 28 H 0.01 0.60 7.80 -2.39 -0.02 0.58 16 29 H 0.02 1.26 7.11 -2.39 -0.02 1.24 16 30 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 32 H 0.41 13.59 8.65 -92.71 -0.80 12.79 16 33 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 34 H 0.19 0.95 8.06 -2.91 -0.02 0.93 16 35 H 0.22 0.51 8.06 -2.91 -0.02 0.49 16 36 H 0.42 5.44 8.18 -92.71 -0.76 4.68 16 37 H 0.41 6.17 8.93 -92.71 -0.83 5.34 16 38 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -80.41 333.11 -0.85 -81.26 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -1.26 Total: 22.67 kcal Atomic # 6 Polarization: 32.36 SS G_CDS: 5.54 Total: 37.91 kcal Atomic # 7 Polarization: -135.73 SS G_CDS: -7.70 Total: -143.43 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: 0.54 Total: -45.36 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -80.41 -0.85 -81.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016322478.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.348 kcal (2) G-P(sol) polarization free energy of solvation -80.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds