Wall clock time and date at job start Fri Apr 10 2020 17:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99891 * 2 1 4 4 H 1.48501 * 109.47290 * 274.84459 * 3 2 1 5 5 H 1.48503 * 109.47352 * 34.84413 * 3 2 1 6 6 H 1.48498 * 109.47058 * 154.84120 * 3 2 1 7 7 C 1.38807 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99636 * 188.44796 * 7 2 1 9 9 N 1.36929 * 120.00457 * 8.44559 * 7 2 1 10 10 C 1.47424 * 125.64714 * 13.74616 * 9 7 2 11 11 C 1.55130 * 104.72643 * 155.81771 * 10 9 7 12 12 C 1.55158 * 101.48238 * 37.29415 * 11 10 9 13 13 H 1.08994 * 110.86807 * 82.77110 * 12 11 10 14 14 N 1.46503 * 110.71977 * 205.97050 * 12 11 10 15 15 C 1.34775 * 120.00283 * 199.97836 * 14 12 11 16 16 O 1.21517 * 119.99622 * 0.02562 * 15 14 12 17 17 C 1.48221 * 120.00239 * 179.97438 * 15 14 12 18 18 C 1.39633 * 119.65228 * 180.02562 * 17 15 14 19 19 C 1.38545 * 119.24303 * 180.02562 * 18 17 15 20 20 C 1.38588 * 118.55380 * 359.97438 * 19 18 17 21 21 C 1.39579 * 119.24601 * 0.02562 * 20 19 18 22 22 C 1.48225 * 119.64950 * 179.97438 * 21 20 19 23 23 N 1.34787 * 119.99983 * 179.97438 * 22 21 20 24 24 O 1.21503 * 120.00210 * 359.97438 * 22 21 20 25 25 N 1.32334 * 119.65516 * 359.72994 * 17 15 14 26 26 C 1.47024 * 125.65306 * 194.05224 * 9 7 2 27 27 H 0.97003 * 120.00088 * 0.02562 * 1 2 3 28 28 H 1.09004 * 110.37109 * 274.74978 * 10 9 7 29 29 H 1.09004 * 110.36660 * 37.07244 * 10 9 7 30 30 H 1.09004 * 111.18910 * 279.19404 * 11 10 9 31 31 H 1.08994 * 110.94489 * 155.29278 * 11 10 9 32 32 H 0.96999 * 119.99946 * 19.97850 * 14 12 11 33 33 H 1.07993 * 120.37915 * 359.97438 * 18 17 15 34 34 H 1.08002 * 120.71928 * 180.02562 * 19 18 17 35 35 H 1.07997 * 120.37109 * 179.97438 * 20 19 18 36 36 H 0.96999 * 119.99549 * 0.02562 * 23 22 21 37 37 H 0.96994 * 120.00087 * 179.97438 * 23 22 21 38 38 H 1.08994 * 109.88202 * 300.44455 * 26 9 7 39 39 H 1.09005 * 109.87697 * 61.45564 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3953 2.1056 -1.3951 5 1 1.5026 2.6210 0.7999 6 1 3.5951 1.4128 0.5952 7 6 2.0102 -1.2021 -0.0005 8 1 3.0815 -1.2072 0.1369 9 7 1.3368 -2.3815 -0.1752 10 6 -0.0519 -2.5155 -0.6516 11 6 -0.1254 -3.9421 -1.2565 12 6 0.7737 -4.7402 -0.2757 13 1 0.2139 -5.0351 0.6117 14 7 1.3483 -5.9140 -0.9376 15 6 1.8145 -6.9421 -0.2013 16 8 1.7578 -6.8956 1.0116 17 6 2.3953 -8.1300 -0.8711 18 6 2.8756 -9.1913 -0.1011 19 6 3.4173 -10.2972 -0.7359 20 6 3.4623 -10.3099 -2.1210 21 6 2.9644 -9.2153 -2.8296 22 6 3.0087 -9.2192 -4.3112 23 7 2.5294 -8.1661 -5.0025 24 8 3.4770 -10.1718 -4.9025 25 7 2.4478 -8.1763 -2.1926 26 6 1.8766 -3.7236 0.0872 27 1 -0.4850 0.8401 -0.0004 28 1 -0.7496 -2.4172 0.1802 29 1 -0.2644 -1.7683 -1.4163 30 1 0.2836 -3.9632 -2.2667 31 1 -1.1482 -4.3186 -1.2435 32 1 1.3933 -5.9513 -1.9059 33 1 2.8262 -9.1501 0.9769 34 1 3.7954 -11.1316 -0.1638 35 1 3.8787 -11.1569 -2.6460 36 1 2.1559 -7.4055 -4.5304 37 1 2.5587 -8.1685 -5.9720 38 1 2.7577 -3.8961 -0.5307 39 1 2.1388 -3.8181 1.1411 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016367397.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:15 Heat of formation + Delta-G solvation = -8.132978 kcal Electronic energy + Delta-G solvation = -24004.872000 eV Core-core repulsion = 20334.170972 eV Total energy + Delta-G solvation = -3670.701028 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.17141 -39.72268 -38.75110 -37.21110 -34.37757 -34.06368 -32.91246 -32.04967 -31.58315 -29.17836 -27.33221 -25.32380 -25.11825 -24.11244 -21.77494 -20.83313 -20.50617 -19.84281 -18.66496 -17.86116 -17.28636 -16.86078 -16.36683 -16.04680 -15.66530 -15.51805 -14.90388 -14.78592 -14.65815 -14.28877 -14.06433 -13.70810 -13.46652 -13.06343 -12.52954 -12.39522 -12.08085 -11.70989 -11.18493 -11.10345 -10.89979 -10.82387 -10.57987 -10.46489 -10.27054 -10.10467 -10.06092 -9.93294 -9.85002 -9.72751 -9.63510 -8.83964 -8.61339 -6.80373 -5.77852 -3.12026 0.10984 0.49781 2.16459 2.83189 2.91327 3.08260 3.38746 3.44500 3.46521 3.59819 3.67511 4.41956 4.42152 4.49135 4.54375 4.56889 5.04083 5.07893 5.24193 5.38350 5.46581 5.50203 5.63614 5.74376 5.75282 6.01169 6.11587 6.31710 6.37201 6.41079 6.44295 6.73626 6.83232 6.93443 7.15330 7.38375 7.53430 7.63214 7.74642 7.83669 8.18360 8.25064 9.16555 9.77845 10.45648 11.35667 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.020914 B = 0.003051 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.504984 B = 9174.556796 C = 9755.623085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.075 0.925 9 N -0.601 5.601 10 C 0.176 3.824 11 C -0.150 4.150 12 C 0.130 3.870 13 H 0.095 0.905 14 N -0.693 5.693 15 C 0.567 3.433 16 O -0.528 6.528 17 C 0.087 3.913 18 C -0.088 4.088 19 C -0.086 4.086 20 C -0.093 4.093 21 C 0.071 3.929 22 C 0.581 3.419 23 N -0.832 5.832 24 O -0.538 6.538 25 N -0.433 5.433 26 C 0.128 3.872 27 H 0.253 0.747 28 H 0.034 0.966 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.406 0.594 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.413 0.587 37 H 0.407 0.593 38 H 0.025 0.975 39 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.133 -20.217 -6.562 21.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.359 4.359 8 H 0.093 0.907 9 N -0.328 5.328 10 C 0.051 3.949 11 C -0.189 4.189 12 C 0.026 3.974 13 H 0.113 0.887 14 N -0.343 5.343 15 C 0.350 3.650 16 O -0.404 6.404 17 C -0.054 4.054 18 C -0.109 4.109 19 C -0.111 4.111 20 C -0.114 4.114 21 C -0.069 4.069 22 C 0.364 3.636 23 N -0.396 5.396 24 O -0.414 6.414 25 N -0.148 5.148 26 C 0.001 3.999 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.242 0.758 33 H 0.174 0.826 34 H 0.169 0.831 35 H 0.171 0.829 36 H 0.244 0.756 37 H 0.238 0.762 38 H 0.043 0.957 39 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.027 -19.897 -6.371 21.110 hybrid contribution 0.636 0.579 -0.094 0.865 sum 3.663 -19.319 -6.465 20.698 Atomic orbital electron populations 1.69936 1.04983 1.25301 1.56207 1.24877 0.95649 0.97886 1.01804 0.86103 0.78765 0.83413 0.77494 1.21588 1.21696 1.20539 1.19022 0.90864 0.82557 1.43416 0.90694 1.44418 1.11638 0.99968 1.76754 1.21402 0.86547 0.89863 0.97129 1.23352 0.98134 0.99259 0.98183 1.22184 0.95115 0.83610 0.96531 0.88730 1.45922 1.60281 1.17408 1.10658 1.17792 0.78544 0.82011 0.86609 1.90819 1.56386 1.80301 1.12887 1.21300 0.99397 0.95835 0.88856 1.22418 0.93552 0.92003 1.02908 1.21700 0.96949 0.98406 0.94081 1.22322 0.95762 0.98614 0.94662 1.21036 0.99811 0.91826 0.94261 1.17793 0.77377 0.82655 0.85739 1.43646 1.63613 1.21195 1.11096 1.90836 1.46030 1.34719 1.69781 1.67350 1.12111 1.25271 1.10098 1.21614 0.94282 0.85953 0.98019 0.93640 0.94811 0.91404 0.91524 0.91448 0.75785 0.82560 0.83050 0.82874 0.75620 0.76172 0.95691 0.95315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.56 10.80 55.49 0.60 -25.96 16 2 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 3 Si 0.91 21.91 29.56 -169.99 -5.03 16.89 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.23 -6.42 10.22 -15.06 -0.15 -6.57 16 8 H 0.08 2.05 7.84 -52.48 -0.41 1.64 16 9 N -0.60 -15.25 3.39 -169.93 -0.58 -15.83 16 10 C 0.18 4.08 5.39 -2.41 -0.01 4.06 16 11 C -0.15 -2.56 6.71 -24.46 -0.16 -2.73 16 12 C 0.13 2.26 3.23 -66.10 -0.21 2.05 16 13 H 0.09 1.74 7.69 -51.93 -0.40 1.34 16 14 N -0.69 -9.84 5.12 -52.85 -0.27 -10.11 16 15 C 0.57 8.28 7.81 -12.16 -0.09 8.18 16 16 O -0.53 -9.31 16.05 5.35 0.09 -9.22 16 17 C 0.09 1.02 6.75 -83.03 -0.56 0.46 16 18 C -0.09 -0.83 9.63 -38.95 -0.38 -1.21 16 19 C -0.09 -0.61 10.16 -39.34 -0.40 -1.01 16 20 C -0.09 -0.77 9.63 -38.95 -0.38 -1.15 16 21 C 0.07 0.72 6.75 -83.03 -0.56 0.16 16 22 C 0.58 5.95 8.09 -12.15 -0.10 5.85 16 23 N -0.83 -6.06 8.86 30.62 0.27 -5.79 16 24 O -0.54 -6.94 17.16 5.36 0.09 -6.84 16 25 N -0.43 -4.60 8.71 -6.38 -0.06 -4.65 16 26 C 0.13 2.75 6.99 -3.07 -0.02 2.73 16 27 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.03 0.85 8.00 -51.93 -0.42 0.44 16 29 H 0.07 1.72 7.16 -51.93 -0.37 1.35 16 30 H 0.07 1.04 8.00 -51.93 -0.42 0.63 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.41 4.86 7.84 -40.82 -0.32 4.54 16 33 H 0.16 1.38 7.64 -52.49 -0.40 0.98 16 34 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.15 1.08 7.64 -52.49 -0.40 0.68 16 36 H 0.41 2.62 8.16 -40.82 -0.33 2.29 16 37 H 0.41 2.26 8.93 -40.82 -0.36 1.90 16 38 H 0.03 0.53 8.03 -51.93 -0.42 0.12 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 337.31 15.07 5.08 5.08 Total: -1.00 -33.96 337.31 -7.57 -41.53 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -4.65 Total: 4.32 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: -3.12 Total: 10.59 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: -0.03 Total: -62.35 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: 0.18 Total: -16.07 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.96 -7.57 -41.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016367397.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.399 kcal (2) G-P(sol) polarization free energy of solvation -33.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds