Wall clock time and date at job start Fri Apr 10 2020 17:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99891 * 2 1 4 4 H 1.48501 * 109.47290 * 274.84459 * 3 2 1 5 5 H 1.48503 * 109.47352 * 34.84413 * 3 2 1 6 6 H 1.48498 * 109.47058 * 154.84120 * 3 2 1 7 7 C 1.38807 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99636 * 188.44796 * 7 2 1 9 9 N 1.36929 * 120.00457 * 8.44559 * 7 2 1 10 10 C 1.47424 * 125.64714 * 13.74616 * 9 7 2 11 11 C 1.55130 * 104.72643 * 155.81771 * 10 9 7 12 12 C 1.55158 * 101.48238 * 37.29415 * 11 10 9 13 13 H 1.08994 * 110.86807 * 82.77110 * 12 11 10 14 14 N 1.46503 * 110.71977 * 205.97050 * 12 11 10 15 15 C 1.34775 * 120.00283 * 199.97836 * 14 12 11 16 16 O 1.21517 * 119.99622 * 0.02562 * 15 14 12 17 17 C 1.48221 * 120.00239 * 179.97438 * 15 14 12 18 18 C 1.39633 * 119.65228 * 180.02562 * 17 15 14 19 19 C 1.38545 * 119.24303 * 180.02562 * 18 17 15 20 20 C 1.38588 * 118.55380 * 359.97438 * 19 18 17 21 21 C 1.39579 * 119.24601 * 0.02562 * 20 19 18 22 22 C 1.48225 * 119.64950 * 179.97438 * 21 20 19 23 23 N 1.34787 * 119.99983 * 179.97438 * 22 21 20 24 24 O 1.21503 * 120.00210 * 359.97438 * 22 21 20 25 25 N 1.32334 * 119.65516 * 359.72994 * 17 15 14 26 26 C 1.47024 * 125.65306 * 194.05224 * 9 7 2 27 27 H 0.97003 * 120.00088 * 0.02562 * 1 2 3 28 28 H 1.09004 * 110.37109 * 274.74978 * 10 9 7 29 29 H 1.09004 * 110.36660 * 37.07244 * 10 9 7 30 30 H 1.09004 * 111.18910 * 279.19404 * 11 10 9 31 31 H 1.08994 * 110.94489 * 155.29278 * 11 10 9 32 32 H 0.96999 * 119.99946 * 19.97850 * 14 12 11 33 33 H 1.07993 * 120.37915 * 359.97438 * 18 17 15 34 34 H 1.08002 * 120.71928 * 180.02562 * 19 18 17 35 35 H 1.07997 * 120.37109 * 179.97438 * 20 19 18 36 36 H 0.96999 * 119.99549 * 0.02562 * 23 22 21 37 37 H 0.96994 * 120.00087 * 179.97438 * 23 22 21 38 38 H 1.08994 * 109.88202 * 300.44455 * 26 9 7 39 39 H 1.09005 * 109.87697 * 61.45564 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3953 2.1056 -1.3951 5 1 1.5026 2.6210 0.7999 6 1 3.5951 1.4128 0.5952 7 6 2.0102 -1.2021 -0.0005 8 1 3.0815 -1.2072 0.1369 9 7 1.3368 -2.3815 -0.1752 10 6 -0.0519 -2.5155 -0.6516 11 6 -0.1254 -3.9421 -1.2565 12 6 0.7737 -4.7402 -0.2757 13 1 0.2139 -5.0351 0.6117 14 7 1.3483 -5.9140 -0.9376 15 6 1.8145 -6.9421 -0.2013 16 8 1.7578 -6.8956 1.0116 17 6 2.3953 -8.1300 -0.8711 18 6 2.8756 -9.1913 -0.1011 19 6 3.4173 -10.2972 -0.7359 20 6 3.4623 -10.3099 -2.1210 21 6 2.9644 -9.2153 -2.8296 22 6 3.0087 -9.2192 -4.3112 23 7 2.5294 -8.1661 -5.0025 24 8 3.4770 -10.1718 -4.9025 25 7 2.4478 -8.1763 -2.1926 26 6 1.8766 -3.7236 0.0872 27 1 -0.4850 0.8401 -0.0004 28 1 -0.7496 -2.4172 0.1802 29 1 -0.2644 -1.7683 -1.4163 30 1 0.2836 -3.9632 -2.2667 31 1 -1.1482 -4.3186 -1.2435 32 1 1.3933 -5.9513 -1.9059 33 1 2.8262 -9.1501 0.9769 34 1 3.7954 -11.1316 -0.1638 35 1 3.8787 -11.1569 -2.6460 36 1 2.1559 -7.4055 -4.5304 37 1 2.5587 -8.1685 -5.9720 38 1 2.7577 -3.8961 -0.5307 39 1 2.1388 -3.8181 1.1411 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016367397.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:15 Heat of formation + Delta-G solvation = -35.378580 kcal Electronic energy + Delta-G solvation = -24006.053458 eV Core-core repulsion = 20334.170972 eV Total energy + Delta-G solvation = -3671.882486 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.99745 -40.79602 -39.71451 -38.76539 -35.72697 -34.95310 -34.04014 -33.32746 -32.59573 -30.95792 -28.97041 -26.72611 -26.02349 -25.42099 -22.72946 -22.29989 -21.72681 -21.35613 -19.58823 -18.90107 -18.67479 -17.95246 -17.41922 -17.06544 -16.72848 -16.58874 -16.37992 -16.04050 -15.77072 -15.68703 -15.26947 -14.76780 -14.38993 -14.32721 -14.15653 -13.83857 -13.52796 -13.18654 -12.92148 -12.73295 -12.53080 -12.26508 -12.01125 -11.99268 -11.84273 -11.57405 -11.26560 -11.12326 -10.79793 -10.77093 -10.70247 -10.44184 -10.13024 -8.86490 -7.90527 -5.27494 -0.64483 -0.22755 1.35673 1.46776 1.47876 1.57411 1.86404 1.91850 2.26746 2.49201 2.77362 2.85350 3.29686 3.55668 3.73753 3.74044 3.81951 3.87019 3.91410 4.02202 4.22981 4.31827 4.41117 4.57351 4.72980 4.89208 4.90809 4.95939 5.01211 5.03771 5.35030 5.40727 5.47654 5.57295 5.70271 5.75600 6.11766 6.18962 6.34908 6.58494 7.05750 7.08391 7.17570 7.72391 8.39157 9.21414 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.020914 B = 0.003051 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.504984 B = 9174.556796 C = 9755.623085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.057 4.057 3 Si 0.979 3.021 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.250 4.250 8 H 0.073 0.927 9 N -0.621 5.621 10 C 0.178 3.822 11 C -0.126 4.126 12 C 0.148 3.852 13 H 0.086 0.914 14 N -0.684 5.684 15 C 0.568 3.432 16 O -0.564 6.564 17 C 0.066 3.934 18 C -0.089 4.089 19 C -0.067 4.067 20 C -0.087 4.087 21 C 0.057 3.943 22 C 0.579 3.421 23 N -0.818 5.818 24 O -0.569 6.569 25 N -0.433 5.433 26 C 0.128 3.872 27 H 0.251 0.749 28 H 0.004 0.996 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.420 0.580 33 H 0.161 0.839 34 H 0.192 0.808 35 H 0.168 0.832 36 H 0.419 0.581 37 H 0.416 0.584 38 H 0.029 0.971 39 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.943 -21.984 -7.515 23.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.251 4.251 3 Si 0.807 3.193 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.196 1.196 7 C -0.379 4.379 8 H 0.091 0.909 9 N -0.348 5.348 10 C 0.052 3.948 11 C -0.165 4.165 12 C 0.042 3.958 13 H 0.104 0.896 14 N -0.334 5.334 15 C 0.354 3.646 16 O -0.442 6.442 17 C -0.074 4.074 18 C -0.109 4.109 19 C -0.092 4.092 20 C -0.107 4.107 21 C -0.084 4.084 22 C 0.363 3.637 23 N -0.381 5.381 24 O -0.448 6.448 25 N -0.148 5.148 26 C 0.002 3.998 27 H 0.060 0.940 28 H 0.022 0.978 29 H 0.058 0.942 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.258 0.742 33 H 0.179 0.821 34 H 0.209 0.791 35 H 0.186 0.814 36 H 0.251 0.749 37 H 0.249 0.751 38 H 0.047 0.953 39 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 3.835 -21.669 -7.362 23.205 hybrid contribution 0.424 1.067 0.212 1.168 sum 4.259 -20.602 -7.150 22.219 Atomic orbital electron populations 1.70121 1.06287 1.25747 1.57017 1.25692 0.96553 1.01059 1.01818 0.85069 0.77732 0.79036 0.77509 1.20921 1.21935 1.19601 1.19352 0.91223 0.84018 1.43351 0.90882 1.44709 1.12420 1.00726 1.76943 1.21245 0.84999 0.93003 0.95508 1.23163 1.00063 0.94766 0.98514 1.21745 0.93558 0.83815 0.96666 0.89629 1.45692 1.60164 1.16336 1.11224 1.18205 0.77628 0.82544 0.86246 1.90800 1.57734 1.81131 1.14504 1.20908 1.01508 0.95528 0.89475 1.22583 0.93173 0.92015 1.03168 1.22085 0.95094 0.98395 0.93671 1.22614 0.94535 0.98324 0.95262 1.21159 1.00553 0.92388 0.94272 1.17882 0.77202 0.82732 0.85925 1.43581 1.62256 1.20541 1.11685 1.90821 1.47775 1.35944 1.70282 1.67204 1.12282 1.25719 1.09593 1.21689 0.95809 0.85578 0.96762 0.94026 0.97841 0.94188 0.89299 0.88394 0.74216 0.82142 0.79082 0.81399 0.74891 0.75131 0.95270 0.97548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.05 10.80 21.65 0.23 -55.82 16 2 C -0.06 -3.24 5.40 84.86 0.46 -2.78 16 3 Si 0.98 45.54 29.56 68.60 2.03 47.57 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.25 -14.25 10.22 84.03 0.86 -13.39 16 8 H 0.07 4.06 7.84 -2.91 -0.02 4.04 16 9 N -0.62 -32.23 3.39 -691.55 -2.35 -34.58 16 10 C 0.18 8.40 5.39 86.93 0.47 8.87 16 11 C -0.13 -4.14 6.71 32.06 0.22 -3.93 16 12 C 0.15 5.06 3.23 46.18 0.15 5.21 16 13 H 0.09 3.14 7.69 -2.39 -0.02 3.12 16 14 N -0.68 -18.52 5.12 -439.42 -2.25 -20.77 16 15 C 0.57 16.09 7.81 86.90 0.68 16.77 16 16 O -0.56 -19.80 16.05 -3.77 -0.06 -19.86 16 17 C 0.07 1.45 6.75 42.06 0.28 1.73 16 18 C -0.09 -1.48 9.63 22.68 0.22 -1.26 16 19 C -0.07 -0.72 10.16 22.43 0.23 -0.49 16 20 C -0.09 -1.19 9.63 22.68 0.22 -0.97 16 21 C 0.06 1.03 6.75 42.04 0.28 1.31 16 22 C 0.58 10.88 8.09 86.90 0.70 11.58 16 23 N -0.82 -10.44 8.86 -175.33 -1.55 -12.00 16 24 O -0.57 -13.90 17.16 -3.72 -0.06 -13.96 16 25 N -0.43 -8.36 8.71 -174.10 -1.52 -9.88 16 26 C 0.13 5.57 6.99 86.73 0.61 6.18 16 27 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 28 H 0.00 0.19 8.00 -2.39 -0.02 0.17 16 29 H 0.04 2.09 7.16 -2.38 -0.02 2.07 16 30 H 0.09 2.55 8.00 -2.39 -0.02 2.53 16 31 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.42 9.16 7.84 -92.71 -0.73 8.43 16 33 H 0.16 2.53 7.64 -2.91 -0.02 2.51 16 34 H 0.19 0.52 8.06 -2.91 -0.02 0.50 16 35 H 0.17 1.84 7.64 -2.91 -0.02 1.82 16 36 H 0.42 4.47 8.16 -92.71 -0.76 3.71 16 37 H 0.42 3.90 8.93 -92.71 -0.83 3.07 16 38 H 0.03 1.24 8.03 -2.39 -0.02 1.22 16 39 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 Total: -1.00 -75.80 337.31 -1.34 -77.14 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -1.18 Total: 13.32 kcal Atomic # 6 Polarization: 23.46 SS G_CDS: 5.37 Total: 28.83 kcal Atomic # 7 Polarization: -125.61 SS G_CDS: -7.43 Total: -133.04 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.12 Total: -33.82 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -75.80 -1.34 -77.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016367397.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.762 kcal (2) G-P(sol) polarization free energy of solvation -75.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds